Wall clock time and date at job start Sat Apr 11 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46893 * 2 1 4 4 C 1.50701 * 115.56092 * 320.85936 * 3 2 1 5 5 O 1.21279 * 120.00082 * 100.20643 * 4 3 2 6 6 N 1.34774 * 120.00319 * 280.20680 * 4 3 2 7 7 C 1.47160 * 120.98207 * 4.87148 * 6 4 3 8 8 C 1.53295 * 108.38684 * 230.51610 * 7 6 4 9 9 O 1.42967 * 109.22175 * 307.69675 * 8 7 6 10 10 C 1.42968 * 114.16730 * 62.58120 * 9 8 7 11 11 H 1.08998 * 109.50862 * 57.34160 * 10 9 8 12 12 C 1.52995 * 109.51084 * 177.49759 * 10 9 8 13 13 N 1.46897 * 109.47304 * 299.99794 * 12 10 9 14 14 C 1.46893 * 111.00329 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47474 * 179.97438 * 14 13 12 16 16 O 1.21295 * 119.99584 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00560 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00476 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99974 * 0.02562 * 18 17 15 20 20 C 1.38943 * 120.00057 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00228 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99860 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47229 * 90.00308 * 22 20 18 24 24 H 1.48504 * 109.46848 * 209.99998 * 22 20 18 25 25 H 1.48497 * 109.47179 * 330.00055 * 22 20 18 26 26 C 1.47148 * 120.98534 * 184.59087 * 6 4 3 27 27 C 1.52999 * 117.49999 * 175.17597 * 3 2 1 28 28 C 1.52995 * 117.49974 * 106.54911 * 3 2 1 29 29 H 1.09000 * 109.46677 * 184.91721 * 1 2 3 30 30 H 1.08993 * 109.47209 * 304.91854 * 1 2 3 31 31 H 1.09005 * 109.46847 * 64.92457 * 1 2 3 32 32 H 1.08994 * 109.47149 * 240.00161 * 2 1 3 33 33 H 1.09003 * 109.46973 * 120.00024 * 2 1 3 34 34 H 1.09003 * 109.67580 * 350.23509 * 7 6 4 35 35 H 1.08996 * 109.67964 * 110.78869 * 7 6 4 36 36 H 1.09006 * 109.51389 * 67.61801 * 8 7 6 37 37 H 1.08996 * 109.51432 * 187.71984 * 8 7 6 38 38 H 1.08998 * 109.47407 * 60.00183 * 12 10 9 39 39 H 1.09003 * 109.46635 * 179.97438 * 12 10 9 40 40 H 1.00898 * 110.99739 * 56.04353 * 13 12 10 41 41 H 1.08998 * 109.47396 * 300.00296 * 14 13 12 42 42 H 1.09005 * 109.46953 * 59.99900 * 14 13 12 43 43 H 0.97001 * 119.99595 * 0.02562 * 17 15 14 44 44 H 0.96999 * 119.99912 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.68713 * 249.20684 * 26 6 4 46 46 H 1.09000 * 109.68335 * 9.76242 * 26 6 4 47 47 H 1.08992 * 117.50454 * 145.01571 * 27 3 2 48 48 H 1.09001 * 117.49675 * 359.97438 * 27 3 2 49 49 H 1.08997 * 117.49918 * 0.02562 * 28 3 2 50 50 H 1.09000 * 117.51940 * 214.96722 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.2626 2.4070 -0.8582 5 8 0.4492 3.1501 -0.3511 6 7 1.4711 2.4439 -2.1892 7 6 2.3732 1.4814 -2.8415 8 6 3.3577 2.2608 -3.7208 9 8 2.6271 3.1333 -4.5861 10 6 1.8642 4.1310 -3.9031 11 1 2.5246 4.7255 -3.2719 12 6 1.1787 5.0393 -4.9258 13 7 2.1959 5.6893 -5.7629 14 6 1.5731 6.5717 -6.7585 15 6 2.6453 7.2197 -7.5961 16 8 3.8134 6.9705 -7.3847 17 7 2.3062 8.0753 -8.5807 18 6 3.2816 8.6644 -9.3431 19 1 4.3216 8.4426 -9.1549 20 6 2.9320 9.5469 -10.3578 21 7 1.6664 9.8164 -10.5871 22 14 4.2610 10.3490 -11.3970 23 1 4.5489 9.4954 -12.5775 24 1 3.7949 11.6833 -11.8528 25 1 5.4955 10.5060 -10.5868 26 6 0.7988 3.4437 -3.0339 27 6 3.5505 1.6579 0.1141 28 6 2.6399 1.9798 1.3009 29 1 -0.3633 -1.0239 0.0881 30 1 -0.3633 0.5882 0.8426 31 1 -0.3633 0.4356 -0.9309 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 2.9215 0.9209 -2.0843 35 1 1.7934 0.7953 -3.4589 36 1 4.0236 2.8487 -3.0889 37 1 3.9445 1.5626 -4.3175 38 1 0.5170 4.4438 -5.5547 39 1 0.5970 5.7994 -4.4043 40 1 2.7899 5.0051 -6.2068 41 1 0.9139 5.9872 -7.4002 42 1 0.9947 7.3427 -6.2494 43 1 1.3721 8.2743 -8.7500 44 1 1.4224 10.4322 -11.2958 45 1 0.0633 2.9518 -3.6704 46 1 0.3040 4.1832 -2.4043 47 1 3.9819 2.4971 -0.4314 48 1 4.1808 0.7719 0.1896 49 1 2.6717 1.3054 2.1566 50 1 2.4727 3.0308 1.5363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327035154.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:26 Heat of formation + Delta-G solvation = -87.439400 kcal Electronic energy + Delta-G solvation = -29727.017662 eV Core-core repulsion = 25562.149314 eV Total energy + Delta-G solvation = -4164.868348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -41.06707 -39.16344 -38.17956 -37.23568 -35.60486 -34.84084 -33.82820 -32.51429 -31.97763 -31.15667 -28.80196 -27.49800 -25.49352 -24.48508 -23.85487 -23.52052 -22.93950 -22.13829 -21.04621 -19.21771 -19.01498 -17.86021 -17.11293 -16.93278 -16.55673 -16.23938 -16.06626 -15.58739 -15.33128 -14.96877 -14.79342 -14.70447 -14.47430 -14.33420 -14.16028 -13.65978 -13.43418 -13.37055 -13.07791 -12.87643 -12.80351 -12.35992 -12.15248 -12.02834 -11.97631 -11.72809 -11.71471 -11.61968 -11.46284 -11.36248 -11.01977 -10.94158 -10.86380 -10.49169 -10.37192 -10.32547 -10.19077 -9.94247 -9.48011 -8.87268 -8.41935 -8.02154 -7.92502 -6.38795 -3.79462 2.23869 2.43609 3.15906 3.19928 3.28263 3.34543 3.48782 3.93790 3.94709 4.05950 4.10575 4.26193 4.31881 4.40314 4.52467 4.63693 4.76100 4.81636 4.85640 4.95117 4.99523 5.02635 5.10303 5.14216 5.17963 5.27829 5.30842 5.31410 5.39325 5.41400 5.45223 5.49900 5.52824 5.60529 5.64075 5.69737 5.78805 5.84709 5.88694 6.01566 6.03108 6.30031 6.93691 6.97310 7.23627 7.58052 7.75315 7.80562 8.09667 8.64811 9.21018 9.57765 10.09539 10.79033 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030919 B = 0.001786 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.360563 B =15674.670943 C =15934.641711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.078 4.078 3 C -0.158 4.158 4 C 0.558 3.442 5 O -0.533 6.533 6 N -0.610 5.610 7 C 0.071 3.929 8 C 0.050 3.950 9 O -0.370 6.370 10 C 0.083 3.917 11 H 0.074 0.926 12 C 0.070 3.930 13 N -0.666 5.666 14 C 0.050 3.950 15 C 0.442 3.558 16 O -0.582 6.582 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.084 3.916 27 C -0.166 4.166 28 C -0.142 4.142 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.107 0.893 38 H 0.037 0.963 39 H 0.087 0.913 40 H 0.358 0.642 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.106 0.894 49 H 0.104 0.896 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.336 -21.755 20.789 30.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.115 4.115 3 C -0.162 4.162 4 C 0.346 3.654 5 O -0.409 6.409 6 N -0.344 5.344 7 C -0.052 4.052 8 C -0.028 4.028 9 O -0.289 6.289 10 C 0.024 3.976 11 H 0.092 0.908 12 C -0.061 4.061 13 N -0.299 5.299 14 C -0.083 4.083 15 C 0.227 3.773 16 O -0.466 6.466 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.039 4.039 27 C -0.203 4.203 28 C -0.179 4.179 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.125 0.875 38 H 0.055 0.945 39 H 0.105 0.895 40 H 0.179 0.821 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.124 0.876 49 H 0.123 0.877 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.956 -20.888 21.300 29.897 hybrid contribution -0.401 -0.100 -1.109 1.183 sum -2.357 -20.988 20.192 29.219 Atomic orbital electron populations 1.21766 0.94885 1.01855 1.02547 1.21063 0.96625 0.91131 1.02703 1.21490 0.96098 0.96891 1.01677 1.19511 0.82005 0.82632 0.81298 1.90705 1.34897 1.42540 1.72740 1.48059 1.46377 1.33409 1.06541 1.22565 0.93021 0.92046 0.97578 1.22936 0.93078 0.93226 0.93570 1.87988 1.63184 1.44822 1.32861 1.22630 0.92455 0.88636 0.93875 0.90793 1.21899 0.93721 0.95397 0.95057 1.60035 1.19933 1.24543 1.25414 1.21677 0.96073 0.96904 0.93604 1.19804 0.89666 0.84159 0.83638 1.90524 1.19486 1.65459 1.71158 1.41860 1.09824 1.39190 1.29275 1.19703 0.90460 1.21677 1.10951 0.87934 1.25263 0.97104 0.97609 0.98053 1.69616 1.15814 1.36296 1.32662 0.85852 0.80480 0.78196 0.79718 1.20455 1.20948 1.19424 1.22407 0.95412 0.92308 0.93789 1.23178 0.90686 1.04062 1.02397 1.23068 1.00849 1.02847 0.91160 0.92216 0.91972 0.92878 0.91129 0.90678 0.88327 0.90454 0.92493 0.87503 0.94485 0.89512 0.82147 0.93800 0.89610 0.77457 0.91913 0.90499 0.87972 0.88233 0.87558 0.87719 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.26 37.16 0.34 -0.73 16 2 C -0.08 -0.44 5.89 -26.73 -0.16 -0.60 16 3 C -0.16 -1.18 1.03 -155.66 -0.16 -1.34 16 4 C 0.56 5.92 5.34 -10.99 -0.06 5.87 16 5 O -0.53 -7.65 16.49 5.56 0.09 -7.55 16 6 N -0.61 -5.78 3.01 -172.01 -0.52 -6.30 16 7 C 0.07 0.50 6.28 -3.53 -0.02 0.47 16 8 C 0.05 0.41 6.99 37.31 0.26 0.67 16 9 O -0.37 -4.39 9.72 -35.23 -0.34 -4.73 16 10 C 0.08 0.96 3.07 -26.36 -0.08 0.88 16 11 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 12 C 0.07 0.88 5.42 -3.83 -0.02 0.86 16 13 N -0.67 -11.27 6.12 -115.07 -0.70 -11.97 16 14 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 15 C 0.44 10.70 7.82 -10.99 -0.09 10.61 16 16 O -0.58 -16.21 15.78 5.54 0.09 -16.13 16 17 N -0.56 -14.58 5.29 -10.97 -0.06 -14.63 16 18 C -0.30 -8.45 9.68 -14.94 -0.14 -8.59 16 19 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.82 13.05 55.50 0.72 -24.09 16 22 Si 0.93 21.29 29.55 -169.99 -5.02 16.26 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.08 0.86 5.94 -3.31 -0.02 0.84 16 27 C -0.17 -0.95 8.52 -26.73 -0.23 -1.18 16 28 C -0.14 -0.97 9.80 -26.73 -0.26 -1.23 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.45 7.42 -51.93 -0.39 0.07 16 32 H 0.07 0.32 7.31 -51.93 -0.38 -0.06 16 33 H 0.07 0.33 7.94 -51.93 -0.41 -0.08 16 34 H 0.10 0.50 4.57 -51.93 -0.24 0.27 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.36 6.51 7.82 -39.29 -0.31 6.20 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.10 1.14 7.12 -51.93 -0.37 0.77 16 47 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.10 0.53 8.08 -51.93 -0.42 0.11 16 50 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 404.65 15.07 6.10 6.10 Total: -1.00 -34.37 404.65 -8.67 -43.04 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -8.26 Total: 12.12 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -0.76 Total: 7.89 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.56 Total: -57.00 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.16 Total: -28.41 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.37 -8.67 -43.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327035154.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.399 kcal (2) G-P(sol) polarization free energy of solvation -34.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds