Wall clock time and date at job start Sat Apr 11 2020 05:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46893 * 2 1 4 4 C 1.50701 * 115.56092 * 320.85936 * 3 2 1 5 5 O 1.21279 * 120.00082 * 100.20643 * 4 3 2 6 6 N 1.34774 * 120.00319 * 280.20680 * 4 3 2 7 7 C 1.47160 * 120.98207 * 4.87148 * 6 4 3 8 8 C 1.53295 * 108.38684 * 230.51610 * 7 6 4 9 9 O 1.42967 * 109.22175 * 307.69675 * 8 7 6 10 10 C 1.42968 * 114.16730 * 62.58120 * 9 8 7 11 11 H 1.08998 * 109.50862 * 57.34160 * 10 9 8 12 12 C 1.52995 * 109.51084 * 177.49759 * 10 9 8 13 13 N 1.46897 * 109.47304 * 299.99794 * 12 10 9 14 14 C 1.46893 * 111.00329 * 180.02562 * 13 12 10 15 15 C 1.50700 * 109.47474 * 179.97438 * 14 13 12 16 16 O 1.21295 * 119.99584 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00560 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00476 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99974 * 0.02562 * 18 17 15 20 20 C 1.38943 * 120.00057 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00228 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99860 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47229 * 90.00308 * 22 20 18 24 24 H 1.48504 * 109.46848 * 209.99998 * 22 20 18 25 25 H 1.48497 * 109.47179 * 330.00055 * 22 20 18 26 26 C 1.47148 * 120.98534 * 184.59087 * 6 4 3 27 27 C 1.52999 * 117.49999 * 175.17597 * 3 2 1 28 28 C 1.52995 * 117.49974 * 106.54911 * 3 2 1 29 29 H 1.09000 * 109.46677 * 184.91721 * 1 2 3 30 30 H 1.08993 * 109.47209 * 304.91854 * 1 2 3 31 31 H 1.09005 * 109.46847 * 64.92457 * 1 2 3 32 32 H 1.08994 * 109.47149 * 240.00161 * 2 1 3 33 33 H 1.09003 * 109.46973 * 120.00024 * 2 1 3 34 34 H 1.09003 * 109.67580 * 350.23509 * 7 6 4 35 35 H 1.08996 * 109.67964 * 110.78869 * 7 6 4 36 36 H 1.09006 * 109.51389 * 67.61801 * 8 7 6 37 37 H 1.08996 * 109.51432 * 187.71984 * 8 7 6 38 38 H 1.08998 * 109.47407 * 60.00183 * 12 10 9 39 39 H 1.09003 * 109.46635 * 179.97438 * 12 10 9 40 40 H 1.00898 * 110.99739 * 56.04353 * 13 12 10 41 41 H 1.08998 * 109.47396 * 300.00296 * 14 13 12 42 42 H 1.09005 * 109.46953 * 59.99900 * 14 13 12 43 43 H 0.97001 * 119.99595 * 0.02562 * 17 15 14 44 44 H 0.96999 * 119.99912 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.68713 * 249.20684 * 26 6 4 46 46 H 1.09000 * 109.68335 * 9.76242 * 26 6 4 47 47 H 1.08992 * 117.50454 * 145.01571 * 27 3 2 48 48 H 1.09001 * 117.49675 * 359.97438 * 27 3 2 49 49 H 1.08997 * 117.49918 * 0.02562 * 28 3 2 50 50 H 1.09000 * 117.51940 * 214.96722 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.2626 2.4070 -0.8582 5 8 0.4492 3.1501 -0.3511 6 7 1.4711 2.4439 -2.1892 7 6 2.3732 1.4814 -2.8415 8 6 3.3577 2.2608 -3.7208 9 8 2.6271 3.1333 -4.5861 10 6 1.8642 4.1310 -3.9031 11 1 2.5246 4.7255 -3.2719 12 6 1.1787 5.0393 -4.9258 13 7 2.1959 5.6893 -5.7629 14 6 1.5731 6.5717 -6.7585 15 6 2.6453 7.2197 -7.5961 16 8 3.8134 6.9705 -7.3847 17 7 2.3062 8.0753 -8.5807 18 6 3.2816 8.6644 -9.3431 19 1 4.3216 8.4426 -9.1549 20 6 2.9320 9.5469 -10.3578 21 7 1.6664 9.8164 -10.5871 22 14 4.2610 10.3490 -11.3970 23 1 4.5489 9.4954 -12.5775 24 1 3.7949 11.6833 -11.8528 25 1 5.4955 10.5060 -10.5868 26 6 0.7988 3.4437 -3.0339 27 6 3.5505 1.6579 0.1141 28 6 2.6399 1.9798 1.3009 29 1 -0.3633 -1.0239 0.0881 30 1 -0.3633 0.5882 0.8426 31 1 -0.3633 0.4356 -0.9309 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 2.9215 0.9209 -2.0843 35 1 1.7934 0.7953 -3.4589 36 1 4.0236 2.8487 -3.0889 37 1 3.9445 1.5626 -4.3175 38 1 0.5170 4.4438 -5.5547 39 1 0.5970 5.7994 -4.4043 40 1 2.7899 5.0051 -6.2068 41 1 0.9139 5.9872 -7.4002 42 1 0.9947 7.3427 -6.2494 43 1 1.3721 8.2743 -8.7500 44 1 1.4224 10.4322 -11.2958 45 1 0.0633 2.9518 -3.6704 46 1 0.3040 4.1832 -2.4043 47 1 3.9819 2.4971 -0.4314 48 1 4.1808 0.7719 0.1896 49 1 2.6717 1.3054 2.1566 50 1 2.4727 3.0308 1.5363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327035154.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:23 Heat of formation + Delta-G solvation = -113.202376 kcal Electronic energy + Delta-G solvation = -29728.134828 eV Core-core repulsion = 25562.149314 eV Total energy + Delta-G solvation = -4165.985515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.81038 -40.23889 -39.81427 -37.92786 -36.85805 -35.90786 -35.66588 -33.32425 -33.01238 -32.85639 -29.71320 -28.73002 -26.96109 -25.49687 -24.78414 -24.40848 -23.42373 -23.04343 -21.87547 -21.06819 -19.91791 -19.73072 -18.03550 -17.79913 -17.71232 -17.25979 -16.92315 -16.75625 -16.50535 -16.31903 -15.88477 -15.74216 -15.57324 -15.36109 -15.06605 -14.92636 -14.74805 -14.44713 -14.19351 -13.87539 -13.57355 -13.47844 -13.26958 -13.14270 -12.98563 -12.81485 -12.70690 -12.60934 -12.50465 -12.41765 -12.27719 -12.22472 -12.11944 -11.74503 -11.51053 -11.40112 -11.22978 -10.95642 -10.70163 -10.36128 -10.01936 -9.66680 -9.35372 -8.46703 -5.95630 1.38186 1.41773 1.45496 1.54929 1.71724 2.04640 2.29259 2.63576 2.69575 2.87712 3.20337 3.32971 3.45815 3.58880 3.77400 3.83725 3.87486 3.90545 3.97151 4.04067 4.21750 4.28035 4.31309 4.35477 4.40715 4.48040 4.49648 4.54200 4.60564 4.61607 4.66525 4.69973 4.78000 4.82831 4.92457 4.94163 4.99279 5.03323 5.11554 5.17553 5.27468 5.32839 5.40775 5.85269 6.06510 6.14926 6.23642 6.38480 6.59963 7.01704 7.12257 7.55650 8.11121 8.70683 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030919 B = 0.001786 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.360563 B =15674.670943 C =15934.641711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.073 4.073 3 C -0.167 4.167 4 C 0.551 3.449 5 O -0.581 6.581 6 N -0.610 5.610 7 C 0.074 3.926 8 C 0.043 3.957 9 O -0.390 6.390 10 C 0.093 3.907 11 H 0.056 0.944 12 C 0.071 3.929 13 N -0.681 5.681 14 C 0.064 3.936 15 C 0.437 3.563 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.995 3.005 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.089 3.911 27 C -0.147 4.147 28 C -0.152 4.152 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.032 0.968 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.129 0.871 38 H 0.051 0.949 39 H 0.098 0.902 40 H 0.349 0.651 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.137 0.863 49 H 0.126 0.874 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 -23.649 20.898 31.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.110 4.110 3 C -0.171 4.171 4 C 0.341 3.659 5 O -0.461 6.461 6 N -0.343 5.343 7 C -0.047 4.047 8 C -0.034 4.034 9 O -0.309 6.309 10 C 0.034 3.966 11 H 0.074 0.926 12 C -0.059 4.059 13 N -0.314 5.314 14 C -0.068 4.068 15 C 0.225 3.775 16 O -0.510 6.510 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.195 1.195 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.035 4.035 27 C -0.184 4.184 28 C -0.189 4.189 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.147 0.853 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.168 0.832 41 H 0.086 0.914 42 H 0.124 0.876 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.155 0.845 49 H 0.144 0.856 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.599 -22.803 21.404 31.315 hybrid contribution -0.525 0.469 -1.109 1.314 sum -2.124 -22.334 20.295 30.252 Atomic orbital electron populations 1.21747 0.96299 1.02279 1.00610 1.21121 0.95273 0.89977 1.04634 1.21529 0.97000 0.97102 1.01420 1.20152 0.81563 0.82495 0.81669 1.90674 1.37116 1.44645 1.73628 1.48181 1.46302 1.33373 1.06410 1.22718 0.92594 0.91456 0.97972 1.23188 0.93234 0.93166 0.93802 1.87957 1.63579 1.45220 1.34154 1.22413 0.92367 0.88546 0.93263 0.92647 1.21991 0.93073 0.95958 0.94832 1.60020 1.21332 1.24871 1.25149 1.21550 0.94075 0.97621 0.93557 1.20867 0.90514 0.83043 0.83101 1.90489 1.21830 1.66549 1.72148 1.41925 1.09599 1.39721 1.29741 1.19672 0.90135 1.23719 1.12885 0.90343 1.26065 0.99416 0.97395 0.98490 1.69676 1.17059 1.36362 1.32996 0.84907 0.77577 0.77725 0.77986 1.19527 1.19505 1.19838 1.22259 0.95161 0.92473 0.93584 1.23273 0.89672 1.04755 1.00654 1.23140 1.01597 1.02061 0.92118 0.90508 0.93921 0.94858 0.89250 0.88574 0.85943 0.89314 0.92884 0.85295 0.93079 0.88349 0.83184 0.91418 0.87579 0.76922 0.91281 0.89539 0.89286 0.89204 0.84496 0.85635 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.26 71.98 0.67 -1.30 16 2 C -0.07 -0.63 5.89 30.60 0.18 -0.45 16 3 C -0.17 -2.23 1.03 -52.93 -0.05 -2.29 16 4 C 0.55 11.69 5.34 87.66 0.47 12.16 16 5 O -0.58 -17.47 16.49 -3.03 -0.05 -17.52 16 6 N -0.61 -11.17 3.01 -816.52 -2.46 -13.64 16 7 C 0.07 0.88 6.28 86.35 0.54 1.43 16 8 C 0.04 0.65 6.99 72.08 0.50 1.15 16 9 O -0.39 -8.93 9.72 -148.98 -1.45 -10.38 16 10 C 0.09 2.13 3.07 30.84 0.09 2.23 16 11 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 12 C 0.07 1.73 5.42 86.30 0.47 2.20 16 13 N -0.68 -22.77 6.12 -517.96 -3.17 -25.94 16 14 C 0.06 2.28 6.17 85.56 0.53 2.80 16 15 C 0.44 21.43 7.82 87.66 0.69 22.12 16 16 O -0.62 -35.66 15.78 -3.08 -0.05 -35.71 16 17 N -0.57 -30.01 5.29 -306.99 -1.62 -31.63 16 18 C -0.33 -19.34 9.68 84.04 0.81 -18.52 16 19 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 20 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 21 N -0.92 -50.16 13.05 21.66 0.28 -49.87 16 22 Si 0.99 43.41 29.55 68.60 2.03 45.44 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 C 0.09 1.81 5.94 86.50 0.51 2.32 16 27 C -0.15 -1.32 8.52 30.60 0.26 -1.06 16 28 C -0.15 -1.91 9.80 30.59 0.30 -1.61 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.03 0.55 7.42 -2.38 -0.02 0.53 16 32 H 0.09 0.46 7.31 -2.39 -0.02 0.44 16 33 H 0.10 0.48 7.94 -2.39 -0.02 0.46 16 34 H 0.12 0.86 4.57 -2.39 -0.01 0.85 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.35 12.73 7.82 -89.70 -0.70 12.03 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 43 H 0.40 19.66 7.90 -92.71 -0.73 18.93 16 44 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 45 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.09 2.06 7.12 -2.39 -0.02 2.04 16 47 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.13 1.01 8.08 -2.39 -0.02 0.99 16 50 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -76.98 404.65 -0.53 -77.51 By element: Atomic # 1 Polarization: 41.33 SS G_CDS: -0.48 Total: 40.85 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 6.44 Total: 20.89 kcal Atomic # 7 Polarization: -114.11 SS G_CDS: -6.97 Total: -121.08 kcal Atomic # 8 Polarization: -62.06 SS G_CDS: -1.55 Total: -63.61 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -76.98 -0.53 -77.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327035154.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.691 kcal (2) G-P(sol) polarization free energy of solvation -76.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds