Wall clock time and date at job start Sat Apr 11 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 110.38646 * 2 1 4 4 C 1.54786 * 110.52473 * 237.82667 * 2 1 3 5 5 N 1.48152 * 104.41955 * 265.22218 * 4 2 1 6 6 C 1.34775 * 127.83680 * 140.36443 * 5 4 2 7 7 O 1.21284 * 120.00087 * 359.71367 * 6 5 4 8 8 C 1.50697 * 119.99999 * 179.71011 * 6 5 4 9 9 H 1.09003 * 110.55425 * 306.42621 * 8 6 5 10 10 C 1.55223 * 110.64522 * 69.37229 * 8 6 5 11 11 C 1.54813 * 101.98905 * 155.44137 * 10 8 6 12 12 C 1.54102 * 104.30109 * 339.25649 * 11 10 8 13 13 O 1.43741 * 107.29586 * 357.90992 * 12 11 10 14 14 C 1.48139 * 104.32312 * 320.11047 * 5 4 2 15 15 C 1.54291 * 110.34317 * 122.23176 * 2 1 3 16 16 H 1.08997 * 110.33846 * 237.74768 * 15 2 1 17 17 N 1.46901 * 110.42905 * 359.95403 * 15 2 1 18 18 C 1.46903 * 110.99966 * 193.56248 * 17 15 2 19 19 C 1.50692 * 109.47288 * 179.97438 * 18 17 15 20 20 O 1.21296 * 120.00519 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99929 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99933 * 180.02562 * 21 19 18 23 23 H 1.07997 * 119.99936 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00166 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99920 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00213 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47119 * 90.00019 * 26 24 22 28 28 H 1.48498 * 109.47343 * 210.00007 * 26 24 22 29 29 H 1.48496 * 109.47146 * 329.99728 * 26 24 22 30 30 H 1.08994 * 109.47172 * 303.90386 * 1 2 3 31 31 H 1.08994 * 109.47185 * 63.90607 * 1 2 3 32 32 H 1.09001 * 109.47092 * 183.90700 * 1 2 3 33 33 H 1.09003 * 109.46729 * 182.22818 * 3 2 1 34 34 H 1.08995 * 109.47108 * 302.23411 * 3 2 1 35 35 H 1.09000 * 109.47252 * 62.23305 * 3 2 1 36 36 H 1.09003 * 110.54675 * 146.48511 * 4 2 1 37 37 H 1.09000 * 110.46489 * 23.92231 * 4 2 1 38 38 H 1.08995 * 110.89195 * 37.29891 * 10 8 6 39 39 H 1.09008 * 111.01733 * 273.63158 * 10 8 6 40 40 H 1.08999 * 110.48150 * 220.52060 * 11 10 8 41 41 H 1.08995 * 110.48718 * 98.00233 * 11 10 8 42 42 H 1.09002 * 109.87459 * 117.33606 * 12 11 10 43 43 H 1.09004 * 109.87661 * 238.32940 * 12 11 10 44 44 H 1.09001 * 110.41078 * 158.62522 * 14 5 4 45 45 H 1.09002 * 110.40663 * 281.06031 * 14 5 4 46 46 H 1.00898 * 111.00347 * 317.51829 * 17 15 2 47 47 H 1.08999 * 109.47420 * 300.00853 * 18 17 15 48 48 H 1.09004 * 109.46890 * 60.00273 * 18 17 15 49 49 H 0.97000 * 120.00211 * 0.02562 * 21 19 18 50 50 H 0.96995 * 120.00069 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0727 -0.7719 -1.2270 5 7 2.3140 -2.1438 -0.7226 6 6 2.0774 -3.3105 -1.3545 7 8 1.6063 -3.3102 -2.4721 8 6 2.3983 -4.6154 -0.6725 9 1 3.4337 -4.6247 -0.3318 10 6 1.4292 -4.8657 0.5139 11 6 1.4697 -6.4079 0.6425 12 6 1.9743 -6.8913 -0.7310 13 8 2.1444 -5.7276 -1.5575 14 6 2.8802 -1.9422 0.6314 15 6 2.0664 -0.7716 1.2237 16 1 2.7095 -0.1288 1.8248 17 7 0.9539 -1.2823 2.0358 18 6 1.4261 -1.7320 3.3522 19 6 0.2597 -2.2474 4.1552 20 8 -0.8553 -2.2412 3.6778 21 7 0.4555 -2.7152 5.4039 22 6 -0.6056 -3.1846 6.1342 23 1 -1.5984 -3.1790 5.7091 24 6 -0.4040 -3.6664 7.4218 25 7 0.8040 -3.6727 7.9393 26 14 -1.8498 -4.3052 8.4172 27 1 -2.0194 -5.7591 8.1667 28 1 -1.5947 -4.0783 9.8624 29 1 -3.0848 -3.5861 8.0137 30 1 -0.3633 0.5732 0.8529 31 1 -0.3633 0.4520 -0.9229 32 1 -0.3633 -1.0253 0.0700 33 1 3.1522 1.4170 -0.0400 34 1 1.6758 1.9657 -0.8692 35 1 1.7408 1.9415 0.9093 36 1 3.0038 -0.3268 -1.5778 37 1 1.3321 -0.7857 -2.0266 38 1 0.4233 -4.5216 0.2734 39 1 1.7943 -4.3897 1.4241 40 1 0.4726 -6.8003 0.8423 41 1 2.1614 -6.7070 1.4300 42 1 2.9280 -7.4063 -0.6151 43 1 1.2424 -7.5633 -1.1792 44 1 2.7495 -2.8400 1.2356 45 1 3.9355 -1.6770 0.5665 46 1 0.2269 -0.5891 2.1300 47 1 2.1589 -2.5285 3.2227 48 1 1.8875 -0.8959 3.8778 49 1 1.3471 -2.7199 5.7859 50 1 0.9447 -4.0087 8.8382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332343663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:13 Heat of formation + Delta-G solvation = -102.718653 kcal Electronic energy + Delta-G solvation = -31399.500666 eV Core-core repulsion = 27233.969760 eV Total energy + Delta-G solvation = -4165.530906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.70653 -39.44377 -38.26231 -37.67480 -34.61439 -33.96906 -33.58418 -32.09754 -31.26998 -29.96254 -28.91384 -27.69756 -26.52579 -26.05994 -24.27579 -23.45159 -22.02825 -21.50075 -19.83763 -19.17412 -18.95780 -17.93606 -17.51147 -16.82683 -16.41522 -16.01018 -15.69770 -15.21248 -15.07372 -14.77940 -14.55221 -14.47078 -14.15663 -14.12040 -13.77332 -13.51045 -13.37696 -12.99984 -12.90492 -12.80364 -12.41697 -12.22963 -11.93536 -11.90940 -11.69985 -11.63407 -11.57713 -11.55081 -11.38063 -11.10180 -10.96862 -10.91277 -10.76190 -10.67255 -10.43799 -10.26806 -9.99143 -9.59133 -9.56128 -8.80413 -8.50868 -8.13330 -8.01560 -6.47287 -3.88101 2.57776 2.63987 3.13736 3.23132 3.28603 3.83829 3.85064 3.98336 4.18118 4.24781 4.35693 4.45999 4.60197 4.80097 4.81923 4.95129 4.97530 4.99023 5.05017 5.10200 5.17339 5.18943 5.30556 5.40047 5.42233 5.45892 5.55361 5.58251 5.60400 5.63267 5.71070 5.79986 5.82890 5.85564 5.85821 5.96020 5.97554 6.03107 6.10254 6.13099 6.22752 6.44223 6.68795 7.14956 7.45438 7.50096 7.55920 8.00675 8.14490 8.55216 9.12665 9.48314 9.99529 10.70312 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.003560 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.885045 B = 7863.883320 C = 9876.921335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 C -0.139 4.139 4 C 0.119 3.881 5 N -0.611 5.611 6 C 0.547 3.453 7 O -0.527 6.527 8 C 0.064 3.936 9 H 0.091 0.909 10 C -0.135 4.135 11 C -0.155 4.155 12 C 0.045 3.955 13 O -0.352 6.352 14 C 0.101 3.899 15 C 0.079 3.921 16 H 0.060 0.940 17 N -0.658 5.658 18 C 0.046 3.954 19 C 0.440 3.560 20 O -0.581 6.581 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.024 3.976 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.357 0.643 47 H 0.082 0.918 48 H 0.044 0.956 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.185 4.095 -12.851 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.077 4.077 3 C -0.196 4.196 4 C -0.004 4.004 5 N -0.346 5.346 6 C 0.335 3.665 7 O -0.402 6.402 8 C 0.003 3.997 9 H 0.108 0.892 10 C -0.172 4.172 11 C -0.193 4.193 12 C -0.031 4.031 13 O -0.270 6.270 14 C -0.023 4.023 15 C -0.032 4.032 16 H 0.077 0.923 17 N -0.293 5.293 18 C -0.086 4.086 19 C 0.225 3.775 20 O -0.465 6.465 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.092 0.908 46 H 0.180 0.820 47 H 0.101 0.899 48 H 0.062 0.938 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.203 3.284 -14.153 16.685 hybrid contribution 0.215 0.418 1.735 1.798 sum 8.418 3.702 -12.418 15.452 Atomic orbital electron populations 1.21753 0.92717 1.03794 1.01109 1.21679 0.97318 0.94733 0.94012 1.21882 1.00791 0.94571 1.02402 1.22493 1.00658 0.80700 0.96505 1.48636 1.63537 1.05033 1.17416 1.19721 0.77806 0.83476 0.85470 1.90712 1.43789 1.86635 1.19085 1.22951 1.00032 0.86478 0.90274 0.89185 1.23111 1.00730 0.95973 0.97422 1.22946 1.03275 0.95587 0.97512 1.23238 1.00603 0.88571 0.90738 1.88970 1.92536 1.16070 1.29447 1.22659 0.96251 1.00100 0.83246 1.22507 0.92823 0.93961 0.93958 0.92276 1.60314 1.10311 1.44681 1.14040 1.21749 0.97337 0.99822 0.89730 1.19765 0.89780 0.84822 0.83086 1.90540 1.24942 1.60375 1.70651 1.41864 1.10948 1.54906 1.12267 1.19685 0.90202 1.37300 0.95670 0.87959 1.25242 0.97695 0.97639 0.97230 1.69604 1.20657 1.46932 1.17093 0.85879 0.80984 0.79146 0.78432 1.20381 1.20929 1.19424 0.92362 0.92869 0.90372 0.92337 0.92063 0.92112 0.91078 0.89763 0.89454 0.88839 0.89856 0.90201 0.92184 0.89521 0.89221 0.90778 0.81992 0.89938 0.93798 0.77527 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 7.20 37.16 0.27 -1.26 16 2 C -0.08 -0.73 1.03 -152.89 -0.16 -0.89 16 3 C -0.14 -1.03 8.26 37.16 0.31 -0.72 16 4 C 0.12 1.26 6.16 -2.19 -0.01 1.25 16 5 N -0.61 -7.42 3.31 -169.06 -0.56 -7.98 16 6 C 0.55 8.22 7.30 -10.99 -0.08 8.14 16 7 O -0.53 -9.99 16.83 -13.49 -0.23 -10.21 16 8 C 0.06 0.83 3.04 -26.71 -0.08 0.75 16 9 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 10 C -0.13 -1.74 6.10 -24.60 -0.15 -1.89 16 11 C -0.16 -1.74 7.01 -25.20 -0.18 -1.91 16 12 C 0.05 0.50 7.70 37.73 0.29 0.79 16 13 O -0.35 -5.23 10.80 -54.27 -0.59 -5.81 16 14 C 0.10 1.01 6.39 -2.41 -0.02 1.00 16 15 C 0.08 0.82 2.99 -66.31 -0.20 0.62 16 16 H 0.06 0.55 7.57 -51.93 -0.39 0.15 16 17 N -0.66 -9.10 4.93 -106.51 -0.52 -9.63 16 18 C 0.05 0.71 5.96 -4.98 -0.03 0.68 16 19 C 0.44 9.57 7.82 -10.99 -0.09 9.49 16 20 O -0.58 -14.83 15.78 5.54 0.09 -14.74 16 21 N -0.56 -13.42 5.29 -10.97 -0.06 -13.47 16 22 C -0.30 -8.00 9.68 -14.93 -0.14 -8.15 16 23 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -23.65 13.05 55.50 0.72 -22.92 16 26 Si 0.93 20.48 29.55 -169.99 -5.02 15.45 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 30 H 0.06 0.64 7.07 -51.93 -0.37 0.28 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.11 7.56 -51.93 -0.39 0.72 16 33 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.63 7.84 -51.93 -0.41 0.22 16 37 H 0.08 1.01 7.61 -51.93 -0.40 0.62 16 38 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 39 H 0.09 1.18 6.40 -51.92 -0.33 0.84 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 0.94 4.25 -51.93 -0.22 0.72 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.36 5.32 6.03 -39.29 -0.24 5.08 16 47 H 0.08 1.12 7.11 -51.93 -0.37 0.75 16 48 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 49 H 0.39 8.90 7.90 -40.82 -0.32 8.58 16 50 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -33.06 395.33 -8.59 -41.65 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -8.01 Total: 13.31 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -0.36 Total: 8.41 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.42 Total: -54.01 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -0.73 Total: -30.77 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.06 -8.59 -41.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332343663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.073 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds