Wall clock time and date at job start Sat Apr 11 2020 05:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 110.38646 * 2 1 4 4 C 1.54786 * 110.52473 * 237.82667 * 2 1 3 5 5 N 1.48152 * 104.41955 * 265.22218 * 4 2 1 6 6 C 1.34775 * 127.83680 * 140.36443 * 5 4 2 7 7 O 1.21284 * 120.00087 * 359.71367 * 6 5 4 8 8 C 1.50697 * 119.99999 * 179.71011 * 6 5 4 9 9 H 1.09003 * 110.55425 * 306.42621 * 8 6 5 10 10 C 1.55223 * 110.64522 * 69.37229 * 8 6 5 11 11 C 1.54813 * 101.98905 * 155.44137 * 10 8 6 12 12 C 1.54102 * 104.30109 * 339.25649 * 11 10 8 13 13 O 1.43741 * 107.29586 * 357.90992 * 12 11 10 14 14 C 1.48139 * 104.32312 * 320.11047 * 5 4 2 15 15 C 1.54291 * 110.34317 * 122.23176 * 2 1 3 16 16 H 1.08997 * 110.33846 * 237.74768 * 15 2 1 17 17 N 1.46901 * 110.42905 * 359.95403 * 15 2 1 18 18 C 1.46903 * 110.99966 * 193.56248 * 17 15 2 19 19 C 1.50692 * 109.47288 * 179.97438 * 18 17 15 20 20 O 1.21296 * 120.00519 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99929 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99933 * 180.02562 * 21 19 18 23 23 H 1.07997 * 119.99936 * 359.97438 * 22 21 19 24 24 C 1.38948 * 120.00166 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99920 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00213 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47119 * 90.00019 * 26 24 22 28 28 H 1.48498 * 109.47343 * 210.00007 * 26 24 22 29 29 H 1.48496 * 109.47146 * 329.99728 * 26 24 22 30 30 H 1.08994 * 109.47172 * 303.90386 * 1 2 3 31 31 H 1.08994 * 109.47185 * 63.90607 * 1 2 3 32 32 H 1.09001 * 109.47092 * 183.90700 * 1 2 3 33 33 H 1.09003 * 109.46729 * 182.22818 * 3 2 1 34 34 H 1.08995 * 109.47108 * 302.23411 * 3 2 1 35 35 H 1.09000 * 109.47252 * 62.23305 * 3 2 1 36 36 H 1.09003 * 110.54675 * 146.48511 * 4 2 1 37 37 H 1.09000 * 110.46489 * 23.92231 * 4 2 1 38 38 H 1.08995 * 110.89195 * 37.29891 * 10 8 6 39 39 H 1.09008 * 111.01733 * 273.63158 * 10 8 6 40 40 H 1.08999 * 110.48150 * 220.52060 * 11 10 8 41 41 H 1.08995 * 110.48718 * 98.00233 * 11 10 8 42 42 H 1.09002 * 109.87459 * 117.33606 * 12 11 10 43 43 H 1.09004 * 109.87661 * 238.32940 * 12 11 10 44 44 H 1.09001 * 110.41078 * 158.62522 * 14 5 4 45 45 H 1.09002 * 110.40663 * 281.06031 * 14 5 4 46 46 H 1.00898 * 111.00347 * 317.51829 * 17 15 2 47 47 H 1.08999 * 109.47420 * 300.00853 * 18 17 15 48 48 H 1.09004 * 109.46890 * 60.00273 * 18 17 15 49 49 H 0.97000 * 120.00211 * 0.02562 * 21 19 18 50 50 H 0.96995 * 120.00069 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0727 -0.7719 -1.2270 5 7 2.3140 -2.1438 -0.7226 6 6 2.0774 -3.3105 -1.3545 7 8 1.6063 -3.3102 -2.4721 8 6 2.3983 -4.6154 -0.6725 9 1 3.4337 -4.6247 -0.3318 10 6 1.4292 -4.8657 0.5139 11 6 1.4697 -6.4079 0.6425 12 6 1.9743 -6.8913 -0.7310 13 8 2.1444 -5.7276 -1.5575 14 6 2.8802 -1.9422 0.6314 15 6 2.0664 -0.7716 1.2237 16 1 2.7095 -0.1288 1.8248 17 7 0.9539 -1.2823 2.0358 18 6 1.4261 -1.7320 3.3522 19 6 0.2597 -2.2474 4.1552 20 8 -0.8553 -2.2412 3.6778 21 7 0.4555 -2.7152 5.4039 22 6 -0.6056 -3.1846 6.1342 23 1 -1.5984 -3.1790 5.7091 24 6 -0.4040 -3.6664 7.4218 25 7 0.8040 -3.6727 7.9393 26 14 -1.8498 -4.3052 8.4172 27 1 -2.0194 -5.7591 8.1667 28 1 -1.5947 -4.0783 9.8624 29 1 -3.0848 -3.5861 8.0137 30 1 -0.3633 0.5732 0.8529 31 1 -0.3633 0.4520 -0.9229 32 1 -0.3633 -1.0253 0.0700 33 1 3.1522 1.4170 -0.0400 34 1 1.6758 1.9657 -0.8692 35 1 1.7408 1.9415 0.9093 36 1 3.0038 -0.3268 -1.5778 37 1 1.3321 -0.7857 -2.0266 38 1 0.4233 -4.5216 0.2734 39 1 1.7943 -4.3897 1.4241 40 1 0.4726 -6.8003 0.8423 41 1 2.1614 -6.7070 1.4300 42 1 2.9280 -7.4063 -0.6151 43 1 1.2424 -7.5633 -1.1792 44 1 2.7495 -2.8400 1.2356 45 1 3.9355 -1.6770 0.5665 46 1 0.2269 -0.5891 2.1300 47 1 2.1589 -2.5285 3.2227 48 1 1.8875 -0.8959 3.8778 49 1 1.3471 -2.7199 5.7859 50 1 0.9447 -4.0087 8.8382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332343663.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:12 Heat of formation + Delta-G solvation = -126.519628 kcal Electronic energy + Delta-G solvation = -31400.532754 eV Core-core repulsion = 27233.969760 eV Total energy + Delta-G solvation = -4166.562994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69657 -40.48070 -39.87553 -38.86169 -36.10765 -35.42422 -34.66632 -33.20451 -33.09678 -30.92160 -29.96099 -28.65111 -27.53375 -27.26767 -25.82088 -24.44788 -23.00652 -22.45538 -21.17492 -20.49474 -19.93833 -19.78778 -18.52787 -17.98286 -17.47652 -17.19137 -16.98479 -16.54651 -16.18801 -16.14267 -15.98481 -15.47585 -15.42341 -15.25811 -15.10124 -14.56278 -14.37677 -14.18535 -14.08025 -13.78163 -13.52561 -13.42736 -13.26464 -13.03742 -12.91192 -12.81396 -12.72277 -12.58074 -12.47184 -12.38872 -12.28569 -12.12650 -11.83983 -11.79955 -11.69876 -11.48941 -11.47504 -11.03296 -10.65251 -10.27489 -9.96923 -9.77797 -9.21082 -8.44089 -5.91473 1.38557 1.43180 1.46057 1.54441 1.68731 2.11213 2.30511 2.91376 2.93976 3.24281 3.28703 3.44366 3.52641 3.63749 3.65765 3.85194 4.01397 4.03025 4.10570 4.19374 4.21343 4.33534 4.36533 4.45592 4.52413 4.60191 4.64731 4.67989 4.70109 4.74014 4.77665 4.80332 4.85134 4.93863 4.97950 5.04316 5.08754 5.10325 5.18747 5.21521 5.38239 5.44153 5.50490 5.75390 5.95785 6.18814 6.41926 6.46380 6.64847 7.05603 7.17380 7.62060 8.18158 8.73074 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.003560 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.885045 B = 7863.883320 C = 9876.921335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.067 4.067 3 C -0.133 4.133 4 C 0.115 3.885 5 N -0.608 5.608 6 C 0.537 3.463 7 O -0.581 6.581 8 C 0.068 3.932 9 H 0.122 0.878 10 C -0.130 4.130 11 C -0.152 4.152 12 C 0.043 3.957 13 O -0.385 6.385 14 C 0.097 3.903 15 C 0.079 3.921 16 H 0.088 0.912 17 N -0.673 5.673 18 C 0.062 3.938 19 C 0.439 3.561 20 O -0.624 6.624 21 N -0.573 5.573 22 C -0.329 4.329 23 H 0.075 0.925 24 C -0.009 4.009 25 N -0.918 5.918 26 Si 0.985 3.015 27 H -0.273 1.273 28 H -0.272 1.272 29 H -0.276 1.276 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.349 0.651 47 H 0.107 0.893 48 H 0.070 0.930 49 H 0.397 0.603 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.773 4.768 -12.005 17.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.069 4.069 3 C -0.190 4.190 4 C -0.007 4.007 5 N -0.341 5.341 6 C 0.326 3.674 7 O -0.461 6.461 8 C 0.008 3.992 9 H 0.139 0.861 10 C -0.168 4.168 11 C -0.190 4.190 12 C -0.034 4.034 13 O -0.304 6.304 14 C -0.025 4.025 15 C -0.031 4.031 16 H 0.106 0.894 17 N -0.308 5.308 18 C -0.070 4.070 19 C 0.227 3.773 20 O -0.510 6.510 21 N -0.211 5.211 22 C -0.459 4.459 23 H 0.093 0.907 24 C -0.209 4.209 25 N -0.559 5.559 26 Si 0.810 3.190 27 H -0.198 1.198 28 H -0.196 1.196 29 H -0.201 1.201 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.118 0.882 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.130 0.870 46 H 0.171 0.829 47 H 0.125 0.875 48 H 0.088 0.912 49 H 0.231 0.769 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.838 3.982 -13.274 17.593 hybrid contribution -0.632 0.259 1.424 1.579 sum 10.206 4.242 -11.850 16.204 Atomic orbital electron populations 1.21677 0.94503 1.01375 1.01419 1.21635 0.95765 0.96263 0.93204 1.21847 1.01963 0.92377 1.02832 1.22676 1.01456 0.80227 0.96383 1.48722 1.62289 1.04905 1.18195 1.20178 0.77300 0.84847 0.85098 1.90674 1.46454 1.87487 1.21443 1.23061 1.01405 0.85279 0.89505 0.86063 1.23007 0.98849 0.97392 0.97598 1.22965 1.03604 0.94076 0.98363 1.23425 1.02151 0.87699 0.90081 1.88940 1.92851 1.17423 1.31162 1.22943 0.97979 0.99898 0.81699 1.22652 0.92066 0.94567 0.93812 0.89392 1.60306 1.11622 1.45349 1.13569 1.21612 0.94510 1.01245 0.89622 1.20931 0.91062 0.82785 0.82515 1.90518 1.27534 1.61527 1.71433 1.41910 1.10462 1.55675 1.13028 1.19583 0.90158 1.39333 0.96851 0.90701 1.25896 1.00050 0.97354 0.97558 1.69650 1.21705 1.47061 1.17519 0.85038 0.77948 0.78569 0.77479 1.19818 1.19636 1.20071 0.92314 0.92292 0.94086 0.90318 0.91519 0.91888 0.88287 0.92019 0.92998 0.88259 0.90458 0.88168 0.89638 0.89057 0.89551 0.86957 0.82914 0.87460 0.91209 0.76919 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 7.20 71.98 0.52 -2.46 16 2 C -0.07 -1.16 1.03 -51.13 -0.05 -1.21 16 3 C -0.13 -1.51 8.26 71.98 0.59 -0.91 16 4 C 0.11 2.26 6.16 86.67 0.53 2.80 16 5 N -0.61 -14.03 3.31 -807.17 -2.67 -16.70 16 6 C 0.54 16.26 7.30 87.66 0.64 16.90 16 7 O -0.58 -23.00 16.83 15.16 0.26 -22.74 16 8 C 0.07 1.74 3.04 30.61 0.09 1.83 16 9 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 10 C -0.13 -3.37 6.10 31.98 0.20 -3.18 16 11 C -0.15 -3.28 7.01 31.59 0.22 -3.06 16 12 C 0.04 0.90 7.70 72.35 0.56 1.46 16 13 O -0.38 -11.40 10.80 -130.77 -1.41 -12.82 16 14 C 0.10 1.63 6.39 86.54 0.55 2.18 16 15 C 0.08 1.41 2.99 45.82 0.14 1.54 16 16 H 0.09 1.16 7.57 -2.39 -0.02 1.15 16 17 N -0.67 -17.76 4.93 -490.89 -2.42 -20.18 16 18 C 0.06 1.77 5.96 85.55 0.51 2.28 16 19 C 0.44 19.12 7.82 87.65 0.69 19.80 16 20 O -0.62 -32.75 15.78 -3.08 -0.05 -32.80 16 21 N -0.57 -27.40 5.29 -306.99 -1.62 -29.02 16 22 C -0.33 -17.96 9.68 84.04 0.81 -17.15 16 23 H 0.07 4.42 7.16 -2.91 -0.02 4.40 16 24 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 25 N -0.92 -47.48 13.05 21.66 0.28 -47.19 16 26 Si 0.99 41.83 29.55 68.60 2.03 43.86 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 28 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 29 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 30 H 0.06 1.30 7.07 -2.39 -0.02 1.28 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.04 1.23 7.56 -2.39 -0.02 1.21 16 33 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.10 1.44 7.84 -2.39 -0.02 1.42 16 37 H 0.06 1.51 7.61 -2.39 -0.02 1.49 16 38 H 0.05 1.69 8.05 -2.39 -0.02 1.67 16 39 H 0.10 2.40 6.40 -2.38 -0.02 2.38 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.09 1.54 4.25 -2.39 -0.01 1.53 16 45 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.35 10.26 6.03 -89.70 -0.54 9.72 16 47 H 0.11 2.57 7.11 -2.39 -0.02 2.55 16 48 H 0.07 1.68 8.11 -2.38 -0.02 1.66 16 49 H 0.40 17.82 7.90 -92.71 -0.73 17.09 16 50 H 0.28 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -75.85 395.33 0.55 -75.31 By element: Atomic # 1 Polarization: 41.77 SS G_CDS: -0.31 Total: 41.46 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 6.47 Total: 20.84 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -6.43 Total: -113.10 kcal Atomic # 8 Polarization: -67.16 SS G_CDS: -1.21 Total: -68.36 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -75.85 0.55 -75.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332343663.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.214 kcal (2) G-P(sol) polarization free energy of solvation -75.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds