Wall clock time and date at job start Sat Apr 11 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 110.38475 * 2 1 4 4 C 1.54383 * 110.34307 * 237.77255 * 2 1 3 5 5 N 1.48156 * 104.61918 * 217.25818 * 4 2 1 6 6 C 1.34772 * 127.84122 * 219.56773 * 5 4 2 7 7 O 1.21280 * 120.00006 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99653 * 179.97438 * 6 5 4 9 9 H 1.08996 * 110.33505 * 55.70316 * 8 6 5 10 10 C 1.54477 * 110.37093 * 293.44414 * 8 6 5 11 11 C 1.54510 * 104.06154 * 217.18968 * 10 8 6 12 12 C 1.54478 * 104.06525 * 0.02562 * 11 10 8 13 13 O 1.44432 * 110.36909 * 177.94687 * 8 6 5 14 14 C 1.48150 * 104.31543 * 39.58310 * 5 4 2 15 15 C 1.54284 * 110.34500 * 122.22837 * 2 1 3 16 16 H 1.08998 * 110.43440 * 237.78954 * 15 2 1 17 17 N 1.46902 * 110.34213 * 0.02562 * 15 2 1 18 18 C 1.46898 * 110.99922 * 192.64681 * 17 15 2 19 19 C 1.50701 * 109.46808 * 179.97438 * 18 17 15 20 20 O 1.21294 * 120.00036 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99775 * 180.02562 * 19 18 17 22 22 C 1.37099 * 120.00089 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99741 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99971 * 180.02562 * 22 21 19 25 25 N 1.31419 * 120.00335 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00118 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47197 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.46738 * 300.00122 * 26 24 22 29 29 H 1.48494 * 109.46890 * 59.99655 * 26 24 22 30 30 H 1.08993 * 109.47556 * 303.91990 * 1 2 3 31 31 H 1.09000 * 109.47399 * 63.92437 * 1 2 3 32 32 H 1.09003 * 109.46983 * 183.91383 * 1 2 3 33 33 H 1.09008 * 109.47248 * 182.23099 * 3 2 1 34 34 H 1.09001 * 109.47333 * 302.22650 * 3 2 1 35 35 H 1.09002 * 109.47302 * 62.23509 * 3 2 1 36 36 H 1.08999 * 110.41342 * 98.47886 * 4 2 1 37 37 H 1.09000 * 110.50785 * 336.09257 * 4 2 1 38 38 H 1.08992 * 110.51318 * 335.84109 * 10 8 6 39 39 H 1.08998 * 110.50658 * 98.41607 * 10 8 6 40 40 H 1.09003 * 110.50458 * 118.65016 * 11 10 8 41 41 H 1.08998 * 110.51530 * 241.21860 * 11 10 8 42 42 H 1.09001 * 110.37079 * 142.80594 * 12 11 10 43 43 H 1.08997 * 110.37416 * 265.03145 * 12 11 10 44 44 H 1.09008 * 110.39962 * 201.62909 * 14 5 4 45 45 H 1.08999 * 110.40446 * 79.20923 * 14 5 4 46 46 H 1.00902 * 110.99596 * 316.60568 * 17 15 2 47 47 H 1.08998 * 109.46760 * 60.00137 * 18 17 15 48 48 H 1.09000 * 109.47294 * 299.99643 * 18 17 15 49 49 H 0.97006 * 120.00056 * 0.02562 * 21 19 18 50 50 H 0.96992 * 119.99952 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 6 2.0667 -0.7719 -1.2245 5 7 3.2665 -1.4816 -0.7227 6 6 4.4424 -1.6665 -1.3548 7 8 4.6061 -1.2250 -2.4724 8 6 5.5538 -2.4219 -0.6726 9 1 5.2084 -3.4093 -0.3666 10 6 6.0711 -1.6304 0.5490 11 6 7.5948 -1.8865 0.5444 12 6 7.8180 -2.8019 -0.6798 13 8 6.6950 -2.5382 -1.5502 14 6 2.8802 -1.9421 0.6313 15 6 2.0664 -0.7715 1.2237 16 1 2.7092 -0.1298 1.8263 17 7 0.9525 -1.2827 2.0335 18 6 1.4255 -1.7529 3.3424 19 6 0.2575 -2.2682 4.1431 20 8 -0.8591 -2.2463 3.6699 21 7 0.4536 -2.7533 5.3852 22 6 -0.6088 -3.2226 6.1136 23 1 -1.6031 -3.2031 5.6922 24 6 -0.4067 -3.7222 7.3942 25 7 0.8030 -3.7454 7.9072 26 14 -1.8544 -4.3609 8.3870 27 1 -1.3765 -4.8345 9.7108 28 1 -2.8426 -3.2693 8.5795 29 1 -2.4952 -5.4860 7.6599 30 1 -0.3634 0.5734 0.8527 31 1 -0.3634 0.4517 -0.9230 32 1 -0.3633 -1.0253 0.0701 33 1 3.1521 1.4171 -0.0400 34 1 1.6758 1.9657 -0.8693 35 1 1.7407 1.9416 0.9094 36 1 2.3401 -0.0794 -2.0206 37 1 1.3243 -1.4859 -1.5812 38 1 5.8621 -0.5672 0.4316 39 1 5.6211 -2.0081 1.4671 40 1 8.1391 -0.9497 0.4247 41 1 7.9003 -2.3901 1.4615 42 1 8.7534 -2.5476 -1.1783 43 1 7.8235 -3.8484 -0.3752 44 1 3.7674 -2.1323 1.2355 45 1 2.2641 -2.8389 0.5664 46 1 0.2318 -0.5844 2.1389 47 1 1.8960 -0.9274 3.8766 48 1 2.1508 -2.5541 3.2002 49 1 1.3466 -2.7704 5.7638 50 1 0.9442 -4.0945 8.8010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332343703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:18 Heat of formation + Delta-G solvation = -103.283445 kcal Electronic energy + Delta-G solvation = -30614.997119 eV Core-core repulsion = 26449.441721 eV Total energy + Delta-G solvation = -4165.555397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85725 -39.61633 -38.32198 -37.79287 -34.76575 -34.01027 -33.56698 -32.39844 -31.26840 -30.17883 -28.90302 -27.63501 -26.64572 -26.11114 -24.28566 -23.71865 -22.20111 -21.76447 -19.91186 -19.28770 -18.95438 -17.93302 -17.57437 -16.69251 -16.44237 -16.30744 -15.89290 -15.48915 -15.25924 -14.85592 -14.71527 -14.44530 -14.23386 -14.00337 -13.93966 -13.85030 -13.52967 -13.24856 -12.92161 -12.65268 -12.42871 -12.25866 -12.14485 -11.95732 -11.91548 -11.75181 -11.67746 -11.58677 -11.52017 -11.15241 -11.08266 -10.95916 -10.89725 -10.64900 -10.48204 -10.32466 -10.25963 -9.80755 -9.54898 -8.91490 -8.53230 -8.18137 -8.01534 -6.46726 -3.87688 2.38346 2.48605 3.16463 3.22759 3.26872 3.63735 3.84559 3.97392 4.04556 4.21244 4.24145 4.39161 4.39272 4.47692 4.65865 4.71039 4.78890 4.88333 4.99073 5.04891 5.12548 5.18074 5.19756 5.24850 5.31864 5.38311 5.46592 5.49160 5.52109 5.56658 5.60249 5.62677 5.65697 5.70597 5.77315 5.83559 5.86316 5.90162 6.04990 6.08970 6.20329 6.36445 6.39673 7.11163 7.32058 7.50351 7.53227 7.96381 8.00740 8.55514 9.12768 9.48597 9.99674 10.70832 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.002647 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.434152 B =10577.355343 C =12241.805037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.138 4.138 4 C 0.120 3.880 5 N -0.619 5.619 6 C 0.542 3.458 7 O -0.524 6.524 8 C 0.061 3.939 9 H 0.096 0.904 10 C -0.145 4.145 11 C -0.153 4.153 12 C 0.041 3.959 13 O -0.346 6.346 14 C 0.101 3.899 15 C 0.081 3.919 16 H 0.054 0.946 17 N -0.657 5.657 18 C 0.047 3.953 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.284 1.284 28 H -0.274 1.274 29 H -0.273 1.273 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.358 0.642 47 H 0.044 0.956 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.179 6.085 -12.852 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 C -0.195 4.195 4 C -0.002 4.002 5 N -0.355 5.355 6 C 0.329 3.671 7 O -0.400 6.400 8 C 0.000 4.000 9 H 0.114 0.886 10 C -0.183 4.183 11 C -0.191 4.191 12 C -0.036 4.036 13 O -0.264 6.264 14 C -0.022 4.022 15 C -0.031 4.031 16 H 0.071 0.929 17 N -0.293 5.293 18 C -0.086 4.086 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.210 1.210 28 H -0.199 1.199 29 H -0.199 1.199 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.181 0.819 47 H 0.062 0.938 48 H 0.103 0.897 49 H 0.225 0.775 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.709 5.649 -14.159 19.222 hybrid contribution 0.153 0.359 1.710 1.754 sum 11.862 6.009 -12.449 18.215 Atomic orbital electron populations 1.21764 0.92338 1.04015 1.01437 1.21574 0.97077 0.95006 0.94059 1.21889 1.00817 0.94682 1.02148 1.22446 0.85863 0.95598 0.96324 1.48786 1.12626 1.56083 1.17981 1.19745 0.81408 0.80225 0.85690 1.90726 1.80509 1.49918 1.18807 1.22805 0.87938 0.99227 0.90016 0.88649 1.22956 0.96074 1.01677 0.97563 1.22943 0.95666 1.01164 0.99338 1.23517 0.90637 0.98743 0.90666 1.89285 1.15755 1.92599 1.28762 1.22685 0.99056 0.98357 0.82141 1.22428 0.92611 0.94039 0.93996 0.92851 1.60314 1.10482 1.43632 1.14907 1.21746 0.97360 0.99773 0.89711 1.19761 0.89782 0.84806 0.83099 1.90529 1.24874 1.60683 1.70590 1.41856 1.10811 1.54452 1.12794 1.19649 0.90046 1.37077 0.96203 0.87955 1.25254 0.97734 0.97604 0.97249 1.69598 1.20594 1.46575 1.17545 0.85925 0.80653 0.79307 0.78396 1.20973 1.19908 1.19850 0.92120 0.92670 0.90021 0.92726 0.92129 0.92282 0.89962 0.90407 0.90156 0.89199 0.90306 0.89821 0.88572 0.91772 0.90382 0.89033 0.81887 0.93803 0.89719 0.77496 0.91794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 7.18 37.16 0.27 -1.12 16 2 C -0.08 -0.75 1.03 -153.11 -0.16 -0.91 16 3 C -0.14 -1.24 8.24 37.16 0.31 -0.93 16 4 C 0.12 1.29 6.14 -2.41 -0.01 1.28 16 5 N -0.62 -6.99 3.32 -169.30 -0.56 -7.55 16 6 C 0.54 7.14 7.18 -10.99 -0.08 7.06 16 7 O -0.52 -9.02 16.82 -13.65 -0.23 -9.25 16 8 C 0.06 0.65 3.07 -27.11 -0.08 0.57 16 9 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 10 C -0.14 -1.17 5.71 -25.16 -0.14 -1.31 16 11 C -0.15 -1.04 7.09 -25.16 -0.18 -1.22 16 12 C 0.04 0.33 7.63 37.93 0.29 0.62 16 13 O -0.35 -4.27 10.92 -54.44 -0.59 -4.86 16 14 C 0.10 1.03 5.96 -2.41 -0.01 1.02 16 15 C 0.08 0.87 2.99 -66.31 -0.20 0.67 16 16 H 0.05 0.55 7.59 -51.93 -0.39 0.16 16 17 N -0.66 -9.06 4.88 -106.51 -0.52 -9.58 16 18 C 0.05 0.73 6.00 -4.98 -0.03 0.70 16 19 C 0.44 9.67 7.82 -10.98 -0.09 9.58 16 20 O -0.58 -14.89 15.78 5.54 0.09 -14.80 16 21 N -0.56 -13.53 5.29 -10.96 -0.06 -13.59 16 22 C -0.30 -8.08 9.68 -14.94 -0.14 -8.23 16 23 H 0.10 2.90 7.16 -52.48 -0.38 2.52 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -23.77 13.05 55.50 0.72 -23.04 16 26 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 29 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 30 H 0.06 0.62 7.07 -51.93 -0.37 0.26 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.97 7.56 -51.93 -0.39 0.57 16 33 H 0.05 0.52 8.14 -51.92 -0.42 0.09 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.93 7.60 -51.93 -0.39 0.54 16 37 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 38 H 0.08 0.71 7.86 -51.93 -0.41 0.30 16 39 H 0.09 0.59 6.75 -51.93 -0.35 0.24 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.66 5.35 -51.92 -0.28 0.39 16 45 H 0.09 1.04 8.06 -51.93 -0.42 0.62 16 46 H 0.36 5.21 6.07 -39.29 -0.24 4.97 16 47 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 48 H 0.08 1.18 7.75 -51.93 -0.40 0.77 16 49 H 0.39 8.98 7.90 -40.82 -0.32 8.65 16 50 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -33.05 396.43 -8.68 -41.73 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -8.11 Total: 11.22 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -0.36 Total: 8.28 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.41 Total: -53.76 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.74 Total: -28.92 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.05 -8.68 -41.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332343703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.558 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds