Wall clock time and date at job start Sat Apr 11 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 110.38475 * 2 1 4 4 C 1.54383 * 110.34307 * 237.77255 * 2 1 3 5 5 N 1.48156 * 104.61918 * 217.25818 * 4 2 1 6 6 C 1.34772 * 127.84122 * 219.56773 * 5 4 2 7 7 O 1.21280 * 120.00006 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99653 * 179.97438 * 6 5 4 9 9 H 1.08996 * 110.33505 * 55.70316 * 8 6 5 10 10 C 1.54477 * 110.37093 * 293.44414 * 8 6 5 11 11 C 1.54510 * 104.06154 * 217.18968 * 10 8 6 12 12 C 1.54478 * 104.06525 * 0.02562 * 11 10 8 13 13 O 1.44432 * 110.36909 * 177.94687 * 8 6 5 14 14 C 1.48150 * 104.31543 * 39.58310 * 5 4 2 15 15 C 1.54284 * 110.34500 * 122.22837 * 2 1 3 16 16 H 1.08998 * 110.43440 * 237.78954 * 15 2 1 17 17 N 1.46902 * 110.34213 * 0.02562 * 15 2 1 18 18 C 1.46898 * 110.99922 * 192.64681 * 17 15 2 19 19 C 1.50701 * 109.46808 * 179.97438 * 18 17 15 20 20 O 1.21294 * 120.00036 * 0.02562 * 19 18 17 21 21 N 1.34778 * 119.99775 * 180.02562 * 19 18 17 22 22 C 1.37099 * 120.00089 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99741 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99971 * 180.02562 * 22 21 19 25 25 N 1.31419 * 120.00335 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00118 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47197 * 180.02562 * 26 24 22 28 28 H 1.48500 * 109.46738 * 300.00122 * 26 24 22 29 29 H 1.48494 * 109.46890 * 59.99655 * 26 24 22 30 30 H 1.08993 * 109.47556 * 303.91990 * 1 2 3 31 31 H 1.09000 * 109.47399 * 63.92437 * 1 2 3 32 32 H 1.09003 * 109.46983 * 183.91383 * 1 2 3 33 33 H 1.09008 * 109.47248 * 182.23099 * 3 2 1 34 34 H 1.09001 * 109.47333 * 302.22650 * 3 2 1 35 35 H 1.09002 * 109.47302 * 62.23509 * 3 2 1 36 36 H 1.08999 * 110.41342 * 98.47886 * 4 2 1 37 37 H 1.09000 * 110.50785 * 336.09257 * 4 2 1 38 38 H 1.08992 * 110.51318 * 335.84109 * 10 8 6 39 39 H 1.08998 * 110.50658 * 98.41607 * 10 8 6 40 40 H 1.09003 * 110.50458 * 118.65016 * 11 10 8 41 41 H 1.08998 * 110.51530 * 241.21860 * 11 10 8 42 42 H 1.09001 * 110.37079 * 142.80594 * 12 11 10 43 43 H 1.08997 * 110.37416 * 265.03145 * 12 11 10 44 44 H 1.09008 * 110.39962 * 201.62909 * 14 5 4 45 45 H 1.08999 * 110.40446 * 79.20923 * 14 5 4 46 46 H 1.00902 * 110.99596 * 316.60568 * 17 15 2 47 47 H 1.08998 * 109.46760 * 60.00137 * 18 17 15 48 48 H 1.09000 * 109.47294 * 299.99643 * 18 17 15 49 49 H 0.97006 * 120.00056 * 0.02562 * 21 19 18 50 50 H 0.96992 * 119.99952 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 6 2.0667 -0.7719 -1.2245 5 7 3.2665 -1.4816 -0.7227 6 6 4.4424 -1.6665 -1.3548 7 8 4.6061 -1.2250 -2.4724 8 6 5.5538 -2.4219 -0.6726 9 1 5.2084 -3.4093 -0.3666 10 6 6.0711 -1.6304 0.5490 11 6 7.5948 -1.8865 0.5444 12 6 7.8180 -2.8019 -0.6798 13 8 6.6950 -2.5382 -1.5502 14 6 2.8802 -1.9421 0.6313 15 6 2.0664 -0.7715 1.2237 16 1 2.7092 -0.1298 1.8263 17 7 0.9525 -1.2827 2.0335 18 6 1.4255 -1.7529 3.3424 19 6 0.2575 -2.2682 4.1431 20 8 -0.8591 -2.2463 3.6699 21 7 0.4536 -2.7533 5.3852 22 6 -0.6088 -3.2226 6.1136 23 1 -1.6031 -3.2031 5.6922 24 6 -0.4067 -3.7222 7.3942 25 7 0.8030 -3.7454 7.9072 26 14 -1.8544 -4.3609 8.3870 27 1 -1.3765 -4.8345 9.7108 28 1 -2.8426 -3.2693 8.5795 29 1 -2.4952 -5.4860 7.6599 30 1 -0.3634 0.5734 0.8527 31 1 -0.3634 0.4517 -0.9230 32 1 -0.3633 -1.0253 0.0701 33 1 3.1521 1.4171 -0.0400 34 1 1.6758 1.9657 -0.8693 35 1 1.7407 1.9416 0.9094 36 1 2.3401 -0.0794 -2.0206 37 1 1.3243 -1.4859 -1.5812 38 1 5.8621 -0.5672 0.4316 39 1 5.6211 -2.0081 1.4671 40 1 8.1391 -0.9497 0.4247 41 1 7.9003 -2.3901 1.4615 42 1 8.7534 -2.5476 -1.1783 43 1 7.8235 -3.8484 -0.3752 44 1 3.7674 -2.1323 1.2355 45 1 2.2641 -2.8389 0.5664 46 1 0.2318 -0.5844 2.1389 47 1 1.8960 -0.9274 3.8766 48 1 2.1508 -2.5541 3.2002 49 1 1.3466 -2.7704 5.7638 50 1 0.9442 -4.0945 8.8010 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332343703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:18 Heat of formation + Delta-G solvation = -126.587428 kcal Electronic energy + Delta-G solvation = -30616.007655 eV Core-core repulsion = 26449.441721 eV Total energy + Delta-G solvation = -4166.565934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.75389 -40.50919 -39.87412 -38.89096 -36.14976 -35.53793 -34.64768 -33.20155 -33.07318 -30.90225 -29.98723 -28.51787 -27.69709 -27.26825 -25.83038 -24.50037 -23.12586 -22.40184 -21.15934 -20.57583 -19.95976 -19.79573 -18.42388 -17.71949 -17.45874 -17.34177 -16.90553 -16.78829 -16.37846 -16.10828 -15.89850 -15.54625 -15.38612 -15.34403 -15.01593 -14.67227 -14.44527 -14.30526 -14.18141 -13.70295 -13.58447 -13.40974 -13.26345 -12.99047 -12.82855 -12.76579 -12.70827 -12.68395 -12.47014 -12.39356 -12.27605 -12.11365 -11.83991 -11.80562 -11.70692 -11.47173 -11.45963 -11.09730 -10.73068 -10.27876 -9.96700 -9.87504 -9.30395 -8.43247 -5.90978 1.41000 1.41825 1.44289 1.54075 1.60534 2.11474 2.31484 2.84623 3.01139 3.23614 3.25017 3.48950 3.53125 3.57300 3.64646 3.85619 3.88991 4.02624 4.17767 4.22136 4.22734 4.32258 4.35221 4.37124 4.51112 4.57901 4.62045 4.64353 4.71128 4.73774 4.79237 4.79551 4.86864 4.92280 4.94916 4.98752 5.03635 5.08429 5.10966 5.21559 5.30384 5.44792 5.52177 5.71535 5.93097 6.14391 6.37193 6.43066 6.64950 6.98710 7.17399 7.62261 8.17704 8.73757 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012653 B = 0.002647 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.434152 B =10577.355343 C =12241.805037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.068 4.068 3 C -0.133 4.133 4 C 0.116 3.884 5 N -0.613 5.613 6 C 0.536 3.464 7 O -0.575 6.575 8 C 0.060 3.940 9 H 0.112 0.888 10 C -0.141 4.141 11 C -0.148 4.148 12 C 0.033 3.967 13 O -0.384 6.384 14 C 0.102 3.898 15 C 0.084 3.916 16 H 0.069 0.931 17 N -0.666 5.666 18 C 0.061 3.939 19 C 0.439 3.561 20 O -0.622 6.622 21 N -0.574 5.574 22 C -0.331 4.331 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.987 3.013 27 H -0.272 1.272 28 H -0.273 1.273 29 H -0.273 1.273 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.103 0.897 45 H 0.083 0.917 46 H 0.353 0.647 47 H 0.069 0.931 48 H 0.109 0.891 49 H 0.397 0.603 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.357 6.179 -11.688 18.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.069 4.069 3 C -0.191 4.191 4 C -0.006 4.006 5 N -0.347 5.347 6 C 0.326 3.674 7 O -0.454 6.454 8 C -0.001 4.001 9 H 0.130 0.870 10 C -0.179 4.179 11 C -0.186 4.186 12 C -0.043 4.043 13 O -0.303 6.303 14 C -0.020 4.020 15 C -0.027 4.027 16 H 0.087 0.913 17 N -0.302 5.302 18 C -0.071 4.071 19 C 0.227 3.773 20 O -0.508 6.508 21 N -0.211 5.211 22 C -0.461 4.461 23 H 0.096 0.904 24 C -0.211 4.211 25 N -0.561 5.561 26 Si 0.812 3.188 27 H -0.197 1.197 28 H -0.198 1.198 29 H -0.199 1.199 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.098 0.902 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.097 0.903 44 H 0.121 0.879 45 H 0.101 0.899 46 H 0.176 0.824 47 H 0.087 0.913 48 H 0.127 0.873 49 H 0.231 0.769 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.905 5.744 -12.973 19.179 hybrid contribution -0.232 0.345 1.257 1.324 sum 12.673 6.089 -11.716 18.302 Atomic orbital electron populations 1.21693 0.92471 1.02841 1.02055 1.21513 0.96820 0.95446 0.93123 1.21848 1.00493 0.93913 1.02827 1.22497 0.85814 0.95617 0.96690 1.48799 1.12234 1.55360 1.18299 1.20341 0.82174 0.79731 0.85198 1.90693 1.81484 1.52211 1.21022 1.22948 0.86910 0.99927 0.90338 0.87008 1.22989 0.97056 1.00802 0.97058 1.22954 0.94680 1.01241 0.99681 1.23766 0.89726 0.99975 0.90785 1.89252 1.17273 1.92927 1.30883 1.22742 0.99883 0.97704 0.81711 1.22466 0.91879 0.94432 0.93879 0.91282 1.60296 1.11502 1.44184 1.14236 1.21623 0.94608 1.01168 0.89703 1.20900 0.91078 0.82821 0.82518 1.90505 1.27305 1.61726 1.71312 1.41917 1.10357 1.55262 1.13589 1.19595 0.90086 1.39045 0.97389 0.90408 1.25947 1.00166 0.97337 0.97632 1.69651 1.21723 1.46743 1.17939 0.85066 0.77841 0.78583 0.77343 1.19671 1.19814 1.19862 0.92210 0.91435 0.91945 0.93095 0.91515 0.91592 0.90715 0.90561 0.91068 0.87010 0.90187 0.87590 0.87796 0.90288 0.87933 0.89874 0.82416 0.91339 0.87310 0.76924 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 7.18 71.98 0.52 -2.04 16 2 C -0.07 -1.24 1.03 -51.28 -0.05 -1.29 16 3 C -0.13 -2.15 8.24 71.98 0.59 -1.56 16 4 C 0.12 2.44 6.14 86.53 0.53 2.97 16 5 N -0.61 -13.18 3.32 -807.93 -2.68 -15.86 16 6 C 0.54 13.92 7.18 87.66 0.63 14.55 16 7 O -0.58 -20.28 16.82 15.34 0.26 -20.02 16 8 C 0.06 1.18 3.07 30.35 0.09 1.27 16 9 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 10 C -0.14 -1.90 5.71 31.61 0.18 -1.72 16 11 C -0.15 -1.60 7.09 31.61 0.22 -1.38 16 12 C 0.03 0.47 7.63 72.48 0.55 1.02 16 13 O -0.38 -9.25 10.92 -130.61 -1.43 -10.68 16 14 C 0.10 1.86 5.96 86.53 0.52 2.37 16 15 C 0.08 1.60 2.99 45.82 0.14 1.74 16 16 H 0.07 1.17 7.59 -2.39 -0.02 1.16 16 17 N -0.67 -17.17 4.88 -490.90 -2.39 -19.56 16 18 C 0.06 1.75 6.00 85.56 0.51 2.26 16 19 C 0.44 19.04 7.82 87.66 0.69 19.72 16 20 O -0.62 -32.09 15.78 -3.07 -0.05 -32.14 16 21 N -0.57 -27.48 5.29 -306.98 -1.62 -29.10 16 22 C -0.33 -18.02 9.68 84.04 0.81 -17.21 16 23 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 24 C -0.01 -0.57 5.50 84.92 0.47 -0.10 16 25 N -0.92 -47.69 13.05 21.66 0.28 -47.40 16 26 Si 0.99 41.61 29.55 68.60 2.03 43.64 16 27 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 29 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 30 H 0.06 1.17 7.07 -2.39 -0.02 1.15 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.46 7.56 -2.39 -0.02 1.44 16 33 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.70 7.60 -2.39 -0.02 1.68 16 37 H 0.08 1.62 7.87 -2.39 -0.02 1.60 16 38 H 0.07 1.10 7.86 -2.39 -0.02 1.08 16 39 H 0.11 0.99 6.75 -2.39 -0.02 0.98 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.10 1.36 5.35 -2.38 -0.01 1.35 16 45 H 0.08 1.72 8.06 -2.39 -0.02 1.70 16 46 H 0.35 9.84 6.07 -89.69 -0.54 9.29 16 47 H 0.07 1.68 8.11 -2.39 -0.02 1.66 16 48 H 0.11 2.64 7.75 -2.39 -0.02 2.62 16 49 H 0.40 17.88 7.90 -92.70 -0.73 17.15 16 50 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 Total: -1.00 -73.22 396.43 0.48 -72.74 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: -0.32 Total: 37.78 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: 6.40 Total: 20.61 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -6.41 Total: -111.93 kcal Atomic # 8 Polarization: -61.62 SS G_CDS: -1.22 Total: -62.84 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Total: -73.22 0.48 -72.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332343703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.852 kcal (2) G-P(sol) polarization free energy of solvation -73.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds