Wall clock time and date at job start Sat Apr 11 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33690 * 126.27507 * 2 1 4 4 C 1.30616 * 108.99516 * 180.25633 * 3 2 1 5 5 C 1.50694 * 125.42593 * 179.74642 * 4 3 2 6 6 C 1.53007 * 109.46937 * 300.02559 * 5 4 3 7 7 C 1.52996 * 109.47312 * 60.02285 * 5 4 3 8 8 O 1.33671 * 109.15340 * 359.77036 * 4 3 2 9 9 C 1.35342 * 107.68280 * 359.97438 * 8 4 3 10 10 C 1.46723 * 126.64102 * 179.97438 * 9 8 4 11 11 O 1.21691 * 119.99515 * 187.52760 * 10 9 8 12 12 N 1.34776 * 120.00385 * 7.52250 * 10 9 8 13 13 C 1.46497 * 119.99602 * 355.90071 * 12 10 9 14 14 C 1.46492 * 120.00317 * 175.90343 * 12 10 9 15 15 C 1.53002 * 109.47422 * 89.99668 * 14 12 10 16 16 H 1.08997 * 109.47191 * 305.00588 * 15 14 12 17 17 O 1.42902 * 109.46847 * 65.00234 * 15 14 12 18 18 C 1.52999 * 109.47266 * 184.99866 * 15 14 12 19 19 N 1.46498 * 109.46891 * 180.02562 * 18 15 14 20 20 C 1.46505 * 120.00062 * 90.00342 * 19 18 15 21 21 C 1.36938 * 120.00167 * 270.00316 * 19 18 15 22 22 H 1.07994 * 120.00168 * 31.76610 * 21 19 18 23 23 C 1.38819 * 119.99658 * 211.76781 * 21 19 18 24 24 N 1.31614 * 120.00341 * 6.57773 * 23 21 19 25 25 Si 1.86801 * 119.99752 * 186.58131 * 23 21 19 26 26 H 1.48509 * 109.47092 * 59.99670 * 25 23 21 27 27 H 1.48500 * 109.47175 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47220 * 300.00109 * 25 23 21 29 29 H 1.09001 * 109.46900 * 270.14041 * 1 2 3 30 30 H 1.09001 * 109.47015 * 30.13430 * 1 2 3 31 31 H 1.08992 * 109.47609 * 150.13597 * 1 2 3 32 32 H 1.08998 * 109.47307 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.46909 * 59.99512 * 6 5 4 34 34 H 1.08993 * 109.46913 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.47077 * 299.99652 * 6 5 4 36 36 H 1.08999 * 109.47136 * 60.00195 * 7 5 4 37 37 H 1.09004 * 109.47548 * 180.02562 * 7 5 4 38 38 H 1.09004 * 109.47295 * 300.00105 * 7 5 4 39 39 H 1.08995 * 109.47248 * 275.80114 * 13 12 10 40 40 H 1.09007 * 109.47378 * 35.80427 * 13 12 10 41 41 H 1.09000 * 109.47232 * 155.80018 * 13 12 10 42 42 H 1.09001 * 109.46970 * 329.99884 * 14 12 10 43 43 H 1.08999 * 109.47629 * 210.00261 * 14 12 10 44 44 H 0.96707 * 114.00217 * 59.99922 * 17 15 14 45 45 H 1.08997 * 109.47605 * 300.00468 * 18 15 14 46 46 H 1.09000 * 109.46908 * 60.00397 * 18 15 14 47 47 H 1.09008 * 109.47098 * 85.32603 * 20 19 18 48 48 H 1.08991 * 109.47304 * 205.32929 * 20 19 18 49 49 H 1.08996 * 109.46727 * 325.33173 * 20 19 18 50 50 H 0.96998 * 120.00168 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6898 -0.0055 5 6 4.7440 1.6029 -0.0129 6 6 4.7062 2.4842 -1.2631 7 6 4.7192 2.4873 1.2354 8 8 3.5889 -0.6462 -0.0042 9 6 2.3136 -1.0992 0.0031 10 6 1.8826 -2.5017 0.0065 11 8 0.7044 -2.7764 -0.1250 12 7 2.7914 -3.4857 0.1551 13 6 4.2183 -3.1607 0.2232 14 6 2.3526 -4.8802 0.2486 15 6 2.2970 -5.4925 -1.1524 16 1 1.6624 -4.8791 -1.7921 17 8 3.6153 -5.5471 -1.7010 18 6 1.7207 -6.9073 -1.0682 19 7 1.6680 -7.4937 -2.4097 20 6 2.8108 -8.2538 -2.9223 21 6 0.5507 -7.3314 -3.1846 22 1 -0.0411 -6.4322 -3.0973 23 6 0.1786 -8.3228 -4.0823 24 7 0.8214 -9.4712 -4.0982 25 14 -1.2342 -8.0267 -5.2679 26 1 -0.9196 -6.8602 -6.1315 27 1 -1.4301 -9.2306 -6.1149 28 1 -2.4757 -7.7536 -4.5002 29 1 -0.3633 0.0025 1.0277 30 1 -0.3633 0.8888 -0.5159 31 1 -0.3634 -0.8911 -0.5117 32 1 5.6557 1.0055 -0.0169 33 1 3.7944 3.0815 -1.2591 34 1 5.5735 3.1443 -1.2686 35 1 4.7239 1.8541 -2.1524 36 1 4.7462 1.8595 2.1260 37 1 5.5861 3.1481 1.2299 38 1 3.8075 3.0847 1.2394 39 1 4.6186 -3.0691 -0.7865 40 1 4.3513 -2.2178 0.7537 41 1 4.7466 -3.9534 0.7529 42 1 1.3621 -4.9198 0.7020 43 1 3.0560 -5.4422 0.8631 44 1 4.2356 -6.0775 -1.1822 45 1 2.3552 -7.5207 -0.4286 46 1 0.7150 -6.8657 -0.6498 47 1 2.7391 -9.2884 -2.5864 48 1 2.8074 -8.2244 -4.0118 49 1 3.7360 -7.8142 -2.5498 50 1 0.5617 -10.1637 -4.7257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332663633.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:28 Heat of formation + Delta-G solvation = -41.678231 kcal Electronic energy + Delta-G solvation = -30538.681010 eV Core-core repulsion = 26375.797015 eV Total energy + Delta-G solvation = -4162.883995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.67817 -39.83743 -37.48547 -36.30708 -35.77429 -34.99554 -34.44100 -31.51209 -31.16771 -29.89075 -28.09234 -27.66603 -26.96079 -25.86364 -25.50108 -24.15469 -22.50666 -21.52502 -20.75427 -20.58907 -20.00896 -17.60528 -17.22910 -16.83745 -16.61149 -16.26577 -15.75547 -15.14632 -15.02716 -14.85742 -14.69238 -14.57254 -13.82564 -13.76300 -13.53791 -13.42739 -13.32148 -13.18320 -12.97223 -12.86284 -12.65668 -12.57868 -12.27328 -12.12722 -11.85239 -11.77790 -11.56078 -11.48056 -11.13551 -11.10463 -10.86825 -10.82739 -10.66543 -10.52567 -10.35350 -10.19032 -10.00879 -9.89087 -9.71826 -9.03911 -8.60414 -8.36935 -6.51123 -5.69412 -3.21740 0.66351 2.13167 2.20805 2.90450 3.00530 3.43599 3.47230 3.49973 3.56905 4.26467 4.42680 4.52686 4.53526 4.61000 4.64815 4.89622 4.95947 5.11274 5.16984 5.17805 5.20845 5.28424 5.34838 5.38578 5.44364 5.47555 5.49235 5.54620 5.66249 5.70694 5.75016 5.78304 5.82061 5.88256 5.91012 5.95309 6.05722 6.19853 6.43413 6.66439 6.77842 6.93332 7.14068 7.42499 7.44318 7.74071 7.87481 7.94761 8.18540 8.52224 9.30973 9.91007 10.44567 11.36221 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.002545 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.064642 B =10998.847001 C =11597.955130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.079 3.921 3 N -0.482 5.482 4 C 0.214 3.786 5 C 0.001 3.999 6 C -0.145 4.145 7 C -0.144 4.144 8 O -0.181 6.181 9 C -0.112 4.112 10 C 0.603 3.397 11 O -0.510 6.510 12 N -0.595 5.595 13 C 0.080 3.920 14 C 0.085 3.915 15 C 0.070 3.930 16 H 0.098 0.902 17 O -0.549 6.549 18 C 0.127 3.873 19 N -0.589 5.589 20 C 0.167 3.833 21 C -0.258 4.258 22 H 0.062 0.938 23 C 0.008 3.992 24 N -0.906 5.906 25 Si 0.904 3.096 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.281 1.281 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.357 0.643 45 H 0.037 0.963 46 H 0.057 0.943 47 H 0.014 0.986 48 H 0.047 0.953 49 H -0.001 1.001 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.318 21.516 13.377 27.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 N -0.212 5.212 4 C 0.008 3.992 5 C -0.019 4.019 6 C -0.202 4.202 7 C -0.201 4.201 8 O -0.069 6.069 9 C -0.166 4.166 10 C 0.390 3.610 11 O -0.387 6.387 12 N -0.326 5.326 13 C -0.063 4.063 14 C -0.038 4.038 15 C 0.007 3.993 16 H 0.116 0.884 17 O -0.352 6.352 18 C -0.003 4.003 19 N -0.311 5.311 20 C 0.023 3.977 21 C -0.388 4.388 22 H 0.080 0.920 23 C -0.191 4.191 24 N -0.550 5.550 25 Si 0.734 3.266 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.208 1.208 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.203 0.797 45 H 0.055 0.945 46 H 0.075 0.925 47 H 0.032 0.968 48 H 0.066 0.934 49 H 0.018 0.982 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.273 22.116 12.723 27.505 hybrid contribution -0.149 -1.008 -0.296 1.061 sum 10.124 21.108 12.427 26.504 Atomic orbital electron populations 1.20419 0.85288 1.04718 1.03568 1.22058 0.98323 0.86360 0.97763 1.70260 1.00292 1.31070 1.19571 1.26601 0.95653 0.79800 0.97129 1.19751 0.90424 0.93171 0.98518 1.21855 1.03502 0.99433 0.95458 1.21846 1.03539 0.99372 0.95373 1.84675 1.29642 1.23113 1.69436 1.22932 0.81174 0.96262 1.16260 1.16433 0.85557 0.81334 0.77706 1.90882 1.16139 1.81483 1.50213 1.47628 1.07057 1.06814 1.71112 1.21975 0.80173 1.01372 1.02752 1.22495 1.01975 0.79477 0.99836 1.23306 0.84544 0.99574 0.91901 0.88424 1.86650 1.20629 1.73925 1.54010 1.21286 0.99124 0.91040 0.88804 1.43595 1.14751 1.61549 1.11197 1.20717 0.85462 0.93049 0.98490 1.19084 1.02871 0.99813 1.16986 0.92045 1.25214 0.98202 0.94872 1.00796 1.70009 1.42216 1.04656 1.38150 0.86351 0.82484 0.76940 0.80847 1.20961 1.21606 1.20763 0.90189 0.90487 0.88261 0.88194 0.91059 0.90785 0.92038 0.92210 0.90795 0.91070 0.91680 0.90878 0.90669 0.88838 0.90178 0.79741 0.94458 0.92468 0.96753 0.93392 0.98249 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 9.95 36.01 0.36 -0.63 16 2 C 0.08 1.08 7.16 -82.47 -0.59 0.49 16 3 N -0.48 -6.11 11.26 -7.07 -0.08 -6.19 16 4 C 0.21 2.32 6.82 -12.80 -0.09 2.23 16 5 C 0.00 0.01 3.39 -91.77 -0.31 -0.31 16 6 C -0.14 -0.89 9.18 37.16 0.34 -0.55 16 7 C -0.14 -0.79 9.17 37.16 0.34 -0.45 16 8 O -0.18 -2.20 7.50 4.41 0.03 -2.17 16 9 C -0.11 -1.58 6.79 -36.84 -0.25 -1.83 16 10 C 0.60 9.42 7.63 -12.83 -0.10 9.33 16 11 O -0.51 -9.23 14.39 5.20 0.07 -9.15 16 12 N -0.59 -8.15 2.84 -183.12 -0.52 -8.67 16 13 C 0.08 0.85 9.32 59.85 0.56 1.40 16 14 C 0.08 1.17 5.07 -4.05 -0.02 1.15 16 15 C 0.07 1.24 3.48 -26.73 -0.09 1.15 16 16 H 0.10 2.14 8.14 -51.93 -0.42 1.72 16 17 O -0.55 -9.52 11.54 -35.23 -0.41 -9.92 16 18 C 0.13 2.57 5.38 -4.04 -0.02 2.55 16 19 N -0.59 -15.20 2.82 -181.12 -0.51 -15.71 16 20 C 0.17 4.21 8.78 59.85 0.53 4.74 16 21 C -0.26 -7.38 9.57 -15.06 -0.14 -7.53 16 22 H 0.06 1.76 7.84 -52.49 -0.41 1.35 16 23 C 0.01 0.23 5.15 -17.43 -0.09 0.14 16 24 N -0.91 -27.15 11.00 55.49 0.61 -26.54 16 25 Si 0.90 22.68 29.56 -169.99 -5.02 17.66 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.10 1.34 6.35 -51.93 -0.33 1.01 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.72 5.38 -51.93 -0.28 0.45 16 41 H 0.07 0.62 7.83 -51.93 -0.41 0.21 16 42 H 0.09 1.36 7.48 -51.93 -0.39 0.97 16 43 H 0.08 0.86 7.86 -51.93 -0.41 0.46 16 44 H 0.36 4.80 8.81 45.56 0.40 5.20 16 45 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 46 H 0.06 1.19 8.04 -51.93 -0.42 0.77 16 47 H 0.01 0.38 7.75 -51.92 -0.40 -0.02 16 48 H 0.05 1.33 7.13 -51.93 -0.37 0.96 16 49 H 0.00 -0.02 6.81 -51.93 -0.35 -0.37 16 50 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 406.27 15.07 6.12 6.12 Total: -1.00 -34.98 406.27 -6.85 -41.83 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.57 Total: 0.84 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 0.42 Total: 11.89 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -0.50 Total: -57.10 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.30 Total: -21.24 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.98 -6.85 -41.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332663633.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.156 kcal (2) G-P(sol) polarization free energy of solvation -34.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds