Wall clock time and date at job start Sat Apr 11 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33690 * 126.27507 * 2 1 4 4 C 1.30616 * 108.99516 * 180.25633 * 3 2 1 5 5 C 1.50694 * 125.42593 * 179.74642 * 4 3 2 6 6 C 1.53007 * 109.46937 * 300.02559 * 5 4 3 7 7 C 1.52996 * 109.47312 * 60.02285 * 5 4 3 8 8 O 1.33671 * 109.15340 * 359.77036 * 4 3 2 9 9 C 1.35342 * 107.68280 * 359.97438 * 8 4 3 10 10 C 1.46723 * 126.64102 * 179.97438 * 9 8 4 11 11 O 1.21691 * 119.99515 * 187.52760 * 10 9 8 12 12 N 1.34776 * 120.00385 * 7.52250 * 10 9 8 13 13 C 1.46497 * 119.99602 * 355.90071 * 12 10 9 14 14 C 1.46492 * 120.00317 * 175.90343 * 12 10 9 15 15 C 1.53002 * 109.47422 * 89.99668 * 14 12 10 16 16 H 1.08997 * 109.47191 * 305.00588 * 15 14 12 17 17 O 1.42902 * 109.46847 * 65.00234 * 15 14 12 18 18 C 1.52999 * 109.47266 * 184.99866 * 15 14 12 19 19 N 1.46498 * 109.46891 * 180.02562 * 18 15 14 20 20 C 1.46505 * 120.00062 * 90.00342 * 19 18 15 21 21 C 1.36938 * 120.00167 * 270.00316 * 19 18 15 22 22 H 1.07994 * 120.00168 * 31.76610 * 21 19 18 23 23 C 1.38819 * 119.99658 * 211.76781 * 21 19 18 24 24 N 1.31614 * 120.00341 * 6.57773 * 23 21 19 25 25 Si 1.86801 * 119.99752 * 186.58131 * 23 21 19 26 26 H 1.48509 * 109.47092 * 59.99670 * 25 23 21 27 27 H 1.48500 * 109.47175 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47220 * 300.00109 * 25 23 21 29 29 H 1.09001 * 109.46900 * 270.14041 * 1 2 3 30 30 H 1.09001 * 109.47015 * 30.13430 * 1 2 3 31 31 H 1.08992 * 109.47609 * 150.13597 * 1 2 3 32 32 H 1.08998 * 109.47307 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.46909 * 59.99512 * 6 5 4 34 34 H 1.08993 * 109.46913 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.47077 * 299.99652 * 6 5 4 36 36 H 1.08999 * 109.47136 * 60.00195 * 7 5 4 37 37 H 1.09004 * 109.47548 * 180.02562 * 7 5 4 38 38 H 1.09004 * 109.47295 * 300.00105 * 7 5 4 39 39 H 1.08995 * 109.47248 * 275.80114 * 13 12 10 40 40 H 1.09007 * 109.47378 * 35.80427 * 13 12 10 41 41 H 1.09000 * 109.47232 * 155.80018 * 13 12 10 42 42 H 1.09001 * 109.46970 * 329.99884 * 14 12 10 43 43 H 1.08999 * 109.47629 * 210.00261 * 14 12 10 44 44 H 0.96707 * 114.00217 * 59.99922 * 17 15 14 45 45 H 1.08997 * 109.47605 * 300.00468 * 18 15 14 46 46 H 1.09000 * 109.46908 * 60.00397 * 18 15 14 47 47 H 1.09008 * 109.47098 * 85.32603 * 20 19 18 48 48 H 1.08991 * 109.47304 * 205.32929 * 20 19 18 49 49 H 1.08996 * 109.46727 * 325.33173 * 20 19 18 50 50 H 0.96998 * 120.00168 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6898 -0.0055 5 6 4.7440 1.6029 -0.0129 6 6 4.7062 2.4842 -1.2631 7 6 4.7192 2.4873 1.2354 8 8 3.5889 -0.6462 -0.0042 9 6 2.3136 -1.0992 0.0031 10 6 1.8826 -2.5017 0.0065 11 8 0.7044 -2.7764 -0.1250 12 7 2.7914 -3.4857 0.1551 13 6 4.2183 -3.1607 0.2232 14 6 2.3526 -4.8802 0.2486 15 6 2.2970 -5.4925 -1.1524 16 1 1.6624 -4.8791 -1.7921 17 8 3.6153 -5.5471 -1.7010 18 6 1.7207 -6.9073 -1.0682 19 7 1.6680 -7.4937 -2.4097 20 6 2.8108 -8.2538 -2.9223 21 6 0.5507 -7.3314 -3.1846 22 1 -0.0411 -6.4322 -3.0973 23 6 0.1786 -8.3228 -4.0823 24 7 0.8214 -9.4712 -4.0982 25 14 -1.2342 -8.0267 -5.2679 26 1 -0.9196 -6.8602 -6.1315 27 1 -1.4301 -9.2306 -6.1149 28 1 -2.4757 -7.7536 -4.5002 29 1 -0.3633 0.0025 1.0277 30 1 -0.3633 0.8888 -0.5159 31 1 -0.3634 -0.8911 -0.5117 32 1 5.6557 1.0055 -0.0169 33 1 3.7944 3.0815 -1.2591 34 1 5.5735 3.1443 -1.2686 35 1 4.7239 1.8541 -2.1524 36 1 4.7462 1.8595 2.1260 37 1 5.5861 3.1481 1.2299 38 1 3.8075 3.0847 1.2394 39 1 4.6186 -3.0691 -0.7865 40 1 4.3513 -2.2178 0.7537 41 1 4.7466 -3.9534 0.7529 42 1 1.3621 -4.9198 0.7020 43 1 3.0560 -5.4422 0.8631 44 1 4.2356 -6.0775 -1.1822 45 1 2.3552 -7.5207 -0.4286 46 1 0.7150 -6.8657 -0.6498 47 1 2.7391 -9.2884 -2.5864 48 1 2.8074 -8.2244 -4.0118 49 1 3.7360 -7.8142 -2.5498 50 1 0.5617 -10.1637 -4.7257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332663633.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:28 Heat of formation + Delta-G solvation = -68.266126 kcal Electronic energy + Delta-G solvation = -30539.833947 eV Core-core repulsion = 26375.797015 eV Total energy + Delta-G solvation = -4164.036932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.62301 -41.00772 -38.95190 -37.18760 -36.81619 -36.33649 -35.80516 -33.34618 -32.29997 -31.29739 -29.17115 -28.18371 -28.10995 -27.78312 -26.87906 -25.09975 -23.96020 -22.70736 -22.30319 -21.45375 -21.09689 -18.90435 -18.54612 -18.20159 -17.73624 -17.40572 -16.94174 -16.79584 -16.44108 -16.24199 -15.70192 -15.49239 -15.26364 -15.02358 -14.75982 -14.68337 -14.41777 -14.25364 -14.07191 -14.03582 -13.70861 -13.43135 -13.22452 -13.08934 -13.04861 -12.83429 -12.73462 -12.67718 -12.54314 -12.32441 -12.25566 -12.14346 -12.09374 -12.02715 -11.98641 -11.83402 -11.72511 -11.38611 -11.22078 -10.63590 -10.09220 -9.65529 -8.57236 -7.87005 -5.42207 -0.34470 1.17509 1.25579 1.41204 1.43433 1.50291 1.86933 1.90608 2.46931 2.74138 3.26239 3.37775 3.53423 3.56504 3.71440 3.92099 3.93807 4.03061 4.08935 4.15063 4.22571 4.32569 4.40380 4.49896 4.52486 4.59936 4.61956 4.69839 4.73116 4.78573 4.78925 4.89284 4.90455 4.95365 4.95887 5.01782 5.08240 5.17660 5.21396 5.30548 5.36745 5.38037 5.40807 5.59602 5.67736 6.06275 6.36075 6.46149 6.81347 7.00950 7.15631 7.86294 8.31543 9.15102 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016437 B = 0.002545 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.064642 B =10998.847001 C =11597.955130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.072 3.928 3 N -0.502 5.502 4 C 0.226 3.774 5 C -0.001 4.001 6 C -0.142 4.142 7 C -0.139 4.139 8 O -0.179 6.179 9 C -0.135 4.135 10 C 0.595 3.405 11 O -0.548 6.548 12 N -0.593 5.593 13 C 0.079 3.921 14 C 0.095 3.905 15 C 0.091 3.909 16 H 0.048 0.952 17 O -0.561 6.561 18 C 0.124 3.876 19 N -0.610 5.610 20 C 0.183 3.817 21 C -0.269 4.269 22 H 0.051 0.949 23 C -0.044 4.044 24 N -0.933 5.933 25 Si 0.964 3.036 26 H -0.283 1.283 27 H -0.287 1.287 28 H -0.275 1.275 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.125 0.875 44 H 0.379 0.621 45 H 0.070 0.930 46 H 0.046 0.954 47 H -0.005 1.005 48 H 0.012 0.988 49 H 0.038 0.962 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.527 22.947 14.789 30.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 N -0.231 5.231 4 C 0.021 3.979 5 C -0.020 4.020 6 C -0.200 4.200 7 C -0.197 4.197 8 O -0.067 6.067 9 C -0.190 4.190 10 C 0.383 3.617 11 O -0.428 6.428 12 N -0.323 5.323 13 C -0.062 4.062 14 C -0.028 4.028 15 C 0.028 3.972 16 H 0.066 0.934 17 O -0.367 6.367 18 C -0.003 4.003 19 N -0.332 5.332 20 C 0.038 3.962 21 C -0.399 4.399 22 H 0.069 0.931 23 C -0.240 4.240 24 N -0.578 5.578 25 Si 0.792 3.208 26 H -0.209 1.209 27 H -0.212 1.212 28 H -0.200 1.200 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.142 0.858 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.143 0.857 44 H 0.227 0.773 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.013 0.987 48 H 0.031 0.969 49 H 0.056 0.944 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.522 23.570 14.176 30.221 hybrid contribution -0.715 -1.334 -0.700 1.668 sum 11.807 22.236 13.476 28.556 Atomic orbital electron populations 1.20399 0.84757 1.04293 1.04239 1.22370 0.99068 0.86733 0.97022 1.70304 1.01058 1.30782 1.20936 1.27661 0.96453 0.79693 0.94130 1.20142 0.89448 0.92995 0.99445 1.21864 1.04182 0.99348 0.94600 1.21845 1.04131 0.99255 0.94453 1.84671 1.28607 1.23722 1.69672 1.22664 0.82077 0.95749 1.18463 1.16713 0.85435 0.82274 0.77281 1.90853 1.17694 1.82259 1.52003 1.47719 1.08187 1.06272 1.70130 1.22153 0.78263 1.03071 1.02760 1.22345 1.03125 0.79946 0.97388 1.22725 0.84085 0.97100 0.93264 0.93379 1.86609 1.20494 1.74564 1.55059 1.21483 0.99627 0.92561 0.86652 1.43830 1.14231 1.62086 1.13098 1.20479 0.86975 0.92426 0.96310 1.19284 1.03570 0.99406 1.17684 0.93100 1.25917 1.00696 0.94821 1.02574 1.70145 1.43537 1.05251 1.38886 0.85408 0.79870 0.76712 0.78839 1.20885 1.21225 1.20049 0.88960 0.89208 0.90212 0.85782 0.92410 0.87901 0.93057 0.92350 0.88026 0.92455 0.92639 0.90139 0.87421 0.89760 0.85681 0.77267 0.91182 0.93553 0.98675 0.96915 0.94378 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 9.95 71.24 0.71 -1.26 16 2 C 0.07 1.99 7.16 41.83 0.30 2.29 16 3 N -0.50 -12.46 11.26 -291.06 -3.28 -15.74 16 4 C 0.23 4.61 6.82 88.29 0.60 5.22 16 5 C 0.00 -0.01 3.39 -11.54 -0.04 -0.05 16 6 C -0.14 -1.43 9.18 71.98 0.66 -0.77 16 7 C -0.14 -1.16 9.17 71.98 0.66 -0.50 16 8 O -0.18 -4.15 7.50 -7.13 -0.05 -4.20 16 9 C -0.13 -3.83 6.79 24.05 0.16 -3.66 16 10 C 0.60 18.84 7.63 86.46 0.66 19.50 16 11 O -0.55 -20.72 14.39 -4.32 -0.06 -20.79 16 12 N -0.59 -15.52 2.84 -851.47 -2.42 -17.93 16 13 C 0.08 1.46 9.32 127.77 1.19 2.65 16 14 C 0.09 2.45 5.07 86.38 0.44 2.89 16 15 C 0.09 3.18 3.48 30.59 0.11 3.29 16 16 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 17 O -0.56 -18.31 11.54 -148.98 -1.72 -20.03 16 18 C 0.12 4.94 5.38 86.38 0.47 5.40 16 19 N -0.61 -31.63 2.82 -726.94 -2.05 -33.67 16 20 C 0.18 9.19 8.78 127.77 1.12 10.31 16 21 C -0.27 -15.74 9.57 84.04 0.80 -14.93 16 22 H 0.05 3.02 7.84 -2.91 -0.02 3.00 16 23 C -0.04 -2.60 5.15 84.86 0.44 -2.16 16 24 N -0.93 -56.90 11.00 21.65 0.24 -56.66 16 25 Si 0.96 47.48 29.56 68.60 2.03 49.51 16 26 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 27 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 28 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 2.30 6.35 -2.39 -0.02 2.28 16 32 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.40 5.38 -2.38 -0.01 1.38 16 41 H 0.11 1.29 7.83 -2.39 -0.02 1.28 16 42 H 0.08 2.39 7.48 -2.39 -0.02 2.37 16 43 H 0.13 2.14 7.86 -2.39 -0.02 2.12 16 44 H 0.38 8.72 8.81 -74.05 -0.65 8.06 16 45 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 46 H 0.05 1.93 8.04 -2.39 -0.02 1.91 16 47 H -0.01 -0.27 7.75 -2.38 -0.02 -0.29 16 48 H 0.01 0.68 7.13 -2.39 -0.02 0.67 16 49 H 0.04 1.58 6.81 -2.39 -0.02 1.56 16 50 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -79.31 406.27 1.26 -78.05 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.29 Total: 13.25 kcal Atomic # 6 Polarization: 19.93 SS G_CDS: 8.28 Total: 28.21 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -7.50 Total: -124.01 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.84 Total: -45.02 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -79.31 1.26 -78.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332663633.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.787 kcal (2) G-P(sol) polarization free energy of solvation -79.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds