Wall clock time and date at job start Sat Apr 11 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47150 * 2 1 4 4 C 1.50695 * 109.47426 * 179.97438 * 3 2 1 5 5 N 1.30619 * 125.41968 * 90.02319 * 4 3 2 6 6 C 1.33690 * 108.99585 * 180.02562 * 5 4 3 7 7 C 1.50705 * 126.27711 * 180.02562 * 6 5 4 8 8 C 1.36345 * 107.45160 * 0.02562 * 6 5 4 9 9 C 1.46724 * 126.64361 * 179.97438 * 8 6 5 10 10 O 1.21687 * 119.99686 * 5.41291 * 9 8 6 11 11 N 1.34769 * 120.00181 * 185.41621 * 9 8 6 12 12 C 1.46505 * 119.99995 * 355.00933 * 11 9 8 13 13 C 1.46496 * 120.00391 * 175.00939 * 11 9 8 14 14 C 1.53002 * 109.47078 * 89.99714 * 13 11 9 15 15 H 1.09002 * 109.46692 * 60.00646 * 14 13 11 16 16 O 1.42894 * 109.47085 * 300.00326 * 14 13 11 17 17 C 1.53003 * 109.47086 * 179.97438 * 14 13 11 18 18 N 1.46504 * 109.47127 * 185.00014 * 17 14 13 19 19 C 1.46499 * 120.00057 * 270.00862 * 18 17 14 20 20 C 1.36930 * 119.99727 * 90.00372 * 18 17 14 21 21 H 1.08004 * 120.00466 * 326.58897 * 20 18 17 22 22 C 1.38810 * 120.00076 * 146.32122 * 20 18 17 23 23 N 1.31621 * 120.00406 * 165.50177 * 22 20 18 24 24 Si 1.86801 * 119.99514 * 345.49346 * 22 20 18 25 25 H 1.48501 * 109.47320 * 85.34670 * 24 22 20 26 26 H 1.48507 * 109.47009 * 205.34242 * 24 22 20 27 27 H 1.48492 * 109.47578 * 325.34297 * 24 22 20 28 28 O 1.33662 * 125.42517 * 270.31758 * 4 3 2 29 29 H 1.09001 * 109.47139 * 299.99685 * 1 2 3 30 30 H 1.08998 * 109.47473 * 60.00028 * 1 2 3 31 31 H 1.09004 * 109.46961 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47139 * 240.00315 * 2 1 3 33 33 H 1.08999 * 109.47061 * 120.00304 * 2 1 3 34 34 H 1.09001 * 109.46842 * 60.00133 * 3 2 1 35 35 H 1.08998 * 109.46910 * 300.00317 * 3 2 1 36 36 H 1.09003 * 109.46995 * 269.98222 * 7 6 5 37 37 H 1.09002 * 109.46535 * 29.97453 * 7 6 5 38 38 H 1.08998 * 109.46891 * 149.97548 * 7 6 5 39 39 H 1.09000 * 109.47192 * 274.17066 * 12 11 9 40 40 H 1.09010 * 109.46869 * 34.16556 * 12 11 9 41 41 H 1.08992 * 109.47299 * 154.16561 * 12 11 9 42 42 H 1.09000 * 109.47091 * 329.99712 * 13 11 9 43 43 H 1.09007 * 109.47317 * 209.99805 * 13 11 9 44 44 H 0.96698 * 114.00200 * 299.99429 * 16 14 13 45 45 H 1.09005 * 109.46354 * 65.00566 * 17 14 13 46 46 H 1.08992 * 109.47281 * 305.00438 * 17 14 13 47 47 H 1.09006 * 109.46600 * 275.49384 * 19 18 17 48 48 H 1.09001 * 109.47508 * 35.48807 * 19 18 17 49 49 H 1.08996 * 109.47443 * 155.49867 * 19 18 17 50 50 H 0.96999 * 119.99719 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.3044 1.4429 -1.0635 6 6 5.5866 1.4423 -0.6850 7 6 6.7858 1.4429 -1.5977 8 6 5.6105 1.4410 0.6783 9 6 6.8029 1.4394 1.5332 10 8 7.9087 1.5386 1.0352 11 7 6.6735 1.3281 2.8701 12 6 5.3409 1.3187 3.4787 13 6 7.8652 1.2165 3.7147 14 6 8.3268 2.6140 4.1328 15 1 7.5310 3.1076 4.6907 16 8 8.6384 3.3810 2.9681 17 6 9.5711 2.4974 5.0154 18 7 9.9429 3.8242 5.5131 19 6 10.8665 4.6624 4.7447 20 6 9.4270 4.2808 6.6965 21 1 8.4268 4.0013 6.9932 22 6 10.1914 5.0984 7.5174 23 7 9.6202 5.7660 8.4974 24 14 12.0311 5.2510 7.2314 25 1 12.2877 6.2939 6.2058 26 1 12.6997 5.6310 8.5018 27 1 12.5683 3.9497 6.7592 28 8 4.3213 1.4367 1.0901 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 7.0749 0.4154 -1.8184 37 1 6.5358 1.9573 -2.5256 38 1 7.6139 1.9565 -1.1092 39 1 5.0125 2.3439 3.6502 40 1 4.6395 0.8197 2.8099 41 1 5.3791 0.7857 4.4286 42 1 8.6610 0.7228 3.1568 43 1 7.6274 0.6314 4.6031 44 1 9.3402 3.0002 2.4225 45 1 10.3936 2.0849 4.4310 46 1 9.3584 1.8396 5.8581 47 1 11.8933 4.3896 4.9888 48 1 10.6939 4.5110 3.6792 49 1 10.6999 5.7102 4.9946 50 1 10.1545 6.3370 9.0713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332676441.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:31 Heat of formation + Delta-G solvation = -40.405599 kcal Electronic energy + Delta-G solvation = -30399.625280 eV Core-core repulsion = 26236.796471 eV Total energy + Delta-G solvation = -4162.828809 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.69684 -39.87100 -37.45363 -36.07501 -35.75619 -35.11604 -34.63110 -31.89903 -31.58111 -30.24039 -28.77033 -27.74591 -27.29031 -25.91888 -25.33164 -23.08226 -22.51218 -21.69315 -21.32626 -20.59734 -20.05907 -17.59104 -17.26268 -16.97230 -16.52773 -16.32062 -15.83786 -15.56724 -15.19008 -15.05280 -14.89020 -14.63772 -14.02502 -13.89457 -13.66941 -13.52198 -13.43293 -13.33150 -13.07118 -12.78680 -12.75313 -12.58093 -12.29051 -12.22008 -12.12604 -12.10442 -11.86660 -11.62381 -11.28891 -11.19075 -11.15661 -10.92716 -10.72514 -10.52607 -10.25265 -10.18266 -10.05509 -9.85079 -9.53389 -9.06639 -8.72976 -8.42865 -6.78236 -5.94309 -3.38833 0.63431 2.13153 2.16864 2.87801 3.01557 3.38131 3.49201 3.53291 3.55680 4.28768 4.41991 4.44020 4.54291 4.55772 4.66932 4.82893 4.93820 4.98002 5.02893 5.08580 5.16455 5.24610 5.28108 5.33960 5.36324 5.40730 5.49081 5.52117 5.55245 5.59477 5.63080 5.65859 5.71984 5.75720 5.86152 5.87324 5.90751 6.14000 6.36689 6.38505 6.45377 6.57097 6.70929 6.85344 7.11904 7.39301 7.93485 8.04251 8.25076 8.36099 8.97272 9.73368 10.10864 11.21798 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.002387 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.731863 B =11726.874254 C =12566.232929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.027 4.027 4 C 0.211 3.789 5 N -0.487 5.487 6 C 0.078 3.922 7 C -0.081 4.081 8 C -0.110 4.110 9 C 0.612 3.388 10 O -0.511 6.511 11 N -0.596 5.596 12 C 0.072 3.928 13 C 0.083 3.917 14 C 0.071 3.929 15 H 0.098 0.902 16 O -0.547 6.547 17 C 0.125 3.875 18 N -0.603 5.603 19 C 0.106 3.894 20 C -0.266 4.266 21 H 0.080 0.920 22 C 0.027 3.973 23 N -0.912 5.912 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.306 1.306 27 H -0.276 1.276 28 O -0.181 6.181 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.366 0.634 45 H 0.042 0.958 46 H 0.063 0.937 47 H 0.004 0.996 48 H 0.038 0.962 49 H 0.055 0.945 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.520 -14.337 -17.937 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.065 4.065 4 C 0.006 3.994 5 N -0.217 5.217 6 C -0.046 4.046 7 C -0.138 4.138 8 C -0.165 4.165 9 C 0.399 3.601 10 O -0.388 6.388 11 N -0.327 5.327 12 C -0.071 4.071 13 C -0.040 4.040 14 C 0.008 3.992 15 H 0.116 0.884 16 O -0.351 6.351 17 C -0.003 4.003 18 N -0.326 5.326 19 C -0.039 4.039 20 C -0.394 4.394 21 H 0.097 0.903 22 C -0.172 4.172 23 N -0.555 5.555 24 Si 0.732 3.268 25 H -0.214 1.214 26 H -0.234 1.234 27 H -0.202 1.202 28 O -0.069 6.069 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.212 0.788 45 H 0.060 0.940 46 H 0.082 0.918 47 H 0.022 0.978 48 H 0.057 0.943 49 H 0.074 0.926 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.615 -13.769 -18.315 27.729 hybrid contribution 1.470 -0.110 0.610 1.595 sum -14.146 -13.879 -17.705 26.574 Atomic orbital electron populations 1.21755 0.94384 1.02400 1.02347 1.21542 0.96708 0.94458 1.03280 1.20295 0.80771 0.99776 1.05701 1.26579 0.96450 0.97156 0.79209 1.70328 1.01587 1.19713 1.30037 1.22048 0.93427 0.97856 0.91272 1.20404 0.92442 1.03495 0.97500 1.22972 0.82332 1.16039 0.95125 1.16286 0.85401 0.77168 0.81225 1.90788 1.24038 1.50514 1.73509 1.47571 1.08078 1.71593 1.05474 1.22080 0.83073 1.02803 0.99155 1.22489 0.87072 0.99890 0.94503 1.23175 0.99643 0.89296 0.87080 0.88439 1.86585 1.59496 1.51932 1.37120 1.21382 0.93925 0.88414 0.96553 1.43894 1.53619 1.12716 1.22376 1.21395 0.91879 0.95757 0.94890 1.18813 0.97870 1.28386 0.94345 0.90253 1.25413 0.97963 0.98335 0.95485 1.69797 1.35537 1.29702 1.20455 0.86742 0.86843 0.77948 0.75293 1.21401 1.23447 1.20193 1.84674 1.16340 1.69506 1.36352 0.92212 0.92225 0.92083 0.90980 0.91325 0.88436 0.87324 0.90250 0.90561 0.88273 0.92026 0.90218 0.90295 0.89619 0.89344 0.78762 0.93983 0.91827 0.97812 0.94313 0.92631 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.91 37.16 0.37 -0.22 16 2 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 3 C -0.03 -0.17 5.84 -27.88 -0.16 -0.33 16 4 C 0.21 2.21 7.57 -12.80 -0.10 2.11 16 5 N -0.49 -6.06 11.26 -7.07 -0.08 -6.14 16 6 C 0.08 1.02 7.16 -82.46 -0.59 0.43 16 7 C -0.08 -0.90 9.93 36.01 0.36 -0.54 16 8 C -0.11 -1.49 6.82 -36.84 -0.25 -1.74 16 9 C 0.61 8.90 7.22 -12.84 -0.09 8.80 16 10 O -0.51 -8.13 12.86 -8.51 -0.11 -8.24 16 11 N -0.60 -7.84 2.83 -183.10 -0.52 -8.35 16 12 C 0.07 0.76 9.85 59.85 0.59 1.35 16 13 C 0.08 1.09 5.18 -4.04 -0.02 1.07 16 14 C 0.07 1.20 3.48 -26.73 -0.09 1.11 16 15 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 16 O -0.55 -10.06 10.79 -48.94 -0.53 -10.59 16 17 C 0.13 2.36 5.35 -4.04 -0.02 2.34 16 18 N -0.60 -14.49 2.57 -181.12 -0.47 -14.95 16 19 C 0.11 2.42 8.26 59.85 0.49 2.91 16 20 C -0.27 -7.47 9.99 -15.06 -0.15 -7.62 16 21 H 0.08 2.37 8.06 -52.48 -0.42 1.94 16 22 C 0.03 0.80 5.30 -17.43 -0.09 0.71 16 23 N -0.91 -28.28 13.97 55.49 0.78 -27.50 16 24 Si 0.90 23.23 24.05 -169.99 -4.09 19.14 16 25 H -0.29 -7.21 6.68 56.52 0.38 -6.84 16 26 H -0.31 -7.97 7.11 56.52 0.40 -7.57 16 27 H -0.28 -7.00 6.68 56.52 0.38 -6.62 16 28 O -0.18 -2.12 7.41 4.43 0.03 -2.08 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 1.21 6.37 -51.93 -0.33 0.88 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.78 5.12 -51.92 -0.27 0.52 16 41 H 0.08 0.69 7.84 -51.93 -0.41 0.28 16 42 H 0.09 1.10 7.50 -51.93 -0.39 0.71 16 43 H 0.09 0.97 7.86 -51.92 -0.41 0.56 16 44 H 0.37 6.00 8.31 45.56 0.38 6.38 16 45 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 46 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 47 H 0.00 0.09 5.43 -51.93 -0.28 -0.19 16 48 H 0.04 0.78 7.04 -51.93 -0.37 0.42 16 49 H 0.06 1.37 6.38 -51.93 -0.33 1.04 16 50 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 397.89 15.07 6.00 6.00 Total: -1.00 -34.85 397.89 -6.40 -41.25 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.50 Total: 1.89 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 0.08 Total: 9.58 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.29 Total: -56.95 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.60 Total: -20.91 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.09 Total: 19.14 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.85 -6.40 -41.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332676441.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.847 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds