Wall clock time and date at job start Sat Apr 11 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00107 * 2 1 4 4 C 1.53000 * 109.47275 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46817 * 65.00332 * 4 3 2 6 6 C 1.36938 * 119.99901 * 269.99893 * 5 4 3 7 7 H 1.08005 * 119.99990 * 145.61761 * 6 5 4 8 8 C 1.38805 * 120.00265 * 325.61405 * 6 5 4 9 9 N 1.31617 * 120.00355 * 156.65431 * 8 6 5 10 10 Si 1.86800 * 119.99823 * 336.65236 * 8 6 5 11 11 H 1.48505 * 109.46759 * 95.28760 * 10 8 6 12 12 H 1.48499 * 109.47408 * 215.28379 * 10 8 6 13 13 H 1.48493 * 109.47576 * 335.28728 * 10 8 6 14 14 C 1.46500 * 120.00058 * 89.99782 * 5 4 3 15 15 C 1.53002 * 109.47335 * 264.18226 * 14 5 4 16 16 N 1.46498 * 109.46987 * 180.40322 * 15 14 5 17 17 C 1.34780 * 119.99625 * 180.02562 * 16 15 14 18 18 O 1.21605 * 120.00214 * 359.97438 * 17 16 15 19 19 C 1.47422 * 119.99732 * 180.02562 * 17 16 15 20 20 N 1.36063 * 126.45123 * 4.78451 * 19 17 16 21 21 C 1.29934 * 108.47930 * 179.97438 * 20 19 17 22 22 O 1.34043 * 109.24290 * 0.02562 * 21 20 19 23 23 C 1.34253 * 108.22744 * 359.76682 * 22 21 20 24 24 C 1.50699 * 126.52762 * 180.22760 * 23 22 21 25 25 C 1.53000 * 109.47256 * 238.60688 * 24 23 22 26 26 C 1.53003 * 109.46962 * 358.60329 * 24 23 22 27 27 C 1.52999 * 109.47494 * 118.60440 * 24 23 22 28 28 H 1.08994 * 109.47011 * 299.99492 * 1 2 3 29 29 H 1.08996 * 109.47082 * 59.99938 * 1 2 3 30 30 H 1.09002 * 109.46993 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46517 * 60.00439 * 3 2 1 32 32 H 1.08996 * 109.47441 * 300.00123 * 3 2 1 33 33 H 1.09001 * 109.47220 * 305.00885 * 4 3 2 34 34 H 1.08999 * 109.47094 * 184.99690 * 4 3 2 35 35 H 0.96999 * 120.00105 * 179.97438 * 9 8 6 36 36 H 1.09009 * 109.47074 * 144.18095 * 14 5 4 37 37 H 1.09001 * 109.47435 * 24.18334 * 14 5 4 38 38 H 1.09001 * 109.47022 * 60.40348 * 15 14 5 39 39 H 1.09004 * 109.47109 * 300.40147 * 15 14 5 40 40 H 0.96996 * 120.00210 * 359.97438 * 16 15 14 41 41 H 1.07999 * 125.37818 * 180.02562 * 21 20 19 42 42 H 1.08992 * 109.47596 * 53.76005 * 25 24 23 43 43 H 1.08997 * 109.47299 * 173.76764 * 25 24 23 44 44 H 1.09000 * 109.46955 * 293.75961 * 25 24 23 45 45 H 1.08998 * 109.47169 * 60.00205 * 26 24 23 46 46 H 1.09001 * 109.47093 * 179.97438 * 26 24 23 47 47 H 1.09000 * 109.47109 * 299.99709 * 26 24 23 48 48 H 1.09000 * 109.46849 * 66.17649 * 27 24 23 49 49 H 1.08990 * 109.47305 * 186.18238 * 27 24 23 50 50 H 1.09003 * 109.46847 * 306.18608 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0977 -0.7974 -1.3345 7 1 3.8722 -1.3037 -2.2615 8 6 4.5104 -1.5268 -0.2280 9 7 4.2032 -2.8028 -0.1289 10 14 5.5018 -0.6974 1.1205 11 1 4.5888 -0.2534 2.2043 12 1 6.4915 -1.6586 1.6699 13 1 6.2133 0.4792 0.5597 14 6 4.2882 1.3999 -2.4130 15 6 3.0649 1.4765 -3.3289 16 7 3.3797 2.3045 -4.4957 17 6 2.4458 2.5144 -5.4446 18 8 1.3422 2.0162 -5.3324 19 6 2.7626 3.3472 -6.6191 20 7 3.9731 3.8892 -6.9230 21 6 3.8591 4.5556 -8.0325 22 8 2.5960 4.4681 -8.4727 23 6 1.9006 3.7146 -7.6060 24 6 0.4423 3.3478 -7.7056 25 6 -0.2946 3.8439 -6.4599 26 6 -0.1637 3.9998 -8.9500 27 6 0.3046 1.8275 -7.8080 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8508 0.5684 0.8426 34 1 3.9784 2.1765 0.0902 35 1 4.4919 -3.3125 0.6442 36 1 5.1248 0.9648 -2.9598 37 1 4.5549 2.4025 -2.0785 38 1 2.2304 1.9182 -2.7843 39 1 2.7939 0.4732 -3.6578 40 1 4.2598 2.7022 -4.5851 41 1 4.6561 5.0949 -8.5227 42 1 -0.1049 4.9087 -6.3254 43 1 -1.3650 3.6779 -6.5807 44 1 0.0613 3.2983 -5.5859 45 1 0.3612 3.6464 -9.8375 46 1 -1.2184 3.7341 -9.0223 47 1 -0.0657 5.0829 -8.8770 48 1 0.6355 1.3691 -6.8760 49 1 -0.7383 1.5686 -7.9900 50 1 0.9188 1.4616 -8.6308 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332928012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:36 Heat of formation + Delta-G solvation = -21.938632 kcal Electronic energy + Delta-G solvation = -30875.713511 eV Core-core repulsion = 26713.685489 eV Total energy + Delta-G solvation = -4162.028022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.67441 -39.50202 -37.51018 -37.05615 -35.84891 -34.97687 -34.18145 -31.57896 -30.21804 -29.53311 -27.77761 -27.46001 -27.32339 -25.63049 -24.69461 -23.30836 -23.10847 -21.99421 -20.81381 -20.51084 -19.52970 -18.24162 -16.97233 -16.79975 -16.29406 -16.02605 -15.69371 -15.37030 -15.26382 -15.17185 -14.70703 -14.61830 -14.23114 -14.08079 -13.85319 -13.61967 -13.39286 -13.27843 -12.58164 -12.46850 -12.42977 -12.34127 -11.90445 -11.81739 -11.76784 -11.66963 -11.29881 -11.22810 -11.15247 -11.10240 -10.98788 -10.73342 -10.65612 -10.61354 -10.20856 -9.73495 -9.71558 -9.47342 -9.10936 -8.85884 -8.60398 -8.40587 -6.89141 -5.86060 -3.25777 0.98096 1.90883 2.33180 3.27482 3.32886 3.37773 3.52062 3.54887 3.88192 4.26676 4.56372 4.61047 4.63800 4.73280 4.82589 4.91955 5.04200 5.30498 5.39494 5.47781 5.48173 5.49648 5.65999 5.67287 5.69620 5.71585 5.78275 5.83549 5.85604 5.89342 5.93223 5.96999 5.97744 6.02705 6.13804 6.17408 6.22177 6.26810 6.33241 6.41958 6.57863 6.72344 6.72870 6.89234 7.24122 7.73187 7.98750 8.14676 8.36357 8.46936 9.02676 9.82054 10.13962 11.29882 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.002864 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.002670 B = 9773.384889 C =10636.340239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.346 6.346 3 C 0.044 3.956 4 C 0.131 3.869 5 N -0.591 5.591 6 C -0.258 4.258 7 H 0.078 0.922 8 C 0.046 3.954 9 N -0.894 5.894 10 Si 0.873 3.127 11 H -0.286 1.286 12 H -0.304 1.304 13 H -0.272 1.272 14 C 0.140 3.860 15 C 0.097 3.903 16 N -0.704 5.704 17 C 0.593 3.407 18 O -0.524 6.524 19 C -0.072 4.072 20 N -0.461 5.461 21 C 0.166 3.834 22 O -0.198 6.198 23 C 0.054 3.946 24 C 0.024 3.976 25 C -0.160 4.160 26 C -0.145 4.145 27 C -0.161 4.161 28 H 0.025 0.975 29 H 0.030 0.970 30 H 0.078 0.922 31 H 0.027 0.973 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.261 0.739 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.405 0.595 41 H 0.253 0.747 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.107 0.893 49 H 0.065 0.935 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.862 17.285 -14.889 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C -0.035 4.035 4 C 0.006 3.994 5 N -0.312 5.312 6 C -0.386 4.386 7 H 0.096 0.904 8 C -0.155 4.155 9 N -0.535 5.535 10 Si 0.705 3.295 11 H -0.215 1.215 12 H -0.232 1.232 13 H -0.197 1.197 14 C 0.013 3.987 15 C -0.028 4.028 16 N -0.353 5.353 17 C 0.379 3.621 18 O -0.403 6.403 19 C -0.192 4.192 20 N -0.190 5.190 21 C -0.062 4.062 22 O -0.084 6.084 23 C -0.003 4.003 24 C 0.024 3.976 25 C -0.217 4.217 26 C -0.203 4.203 27 C -0.218 4.218 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.239 0.761 41 H 0.269 0.731 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.126 0.874 49 H 0.084 0.916 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.914 16.497 -14.328 22.637 hybrid contribution 0.310 1.111 0.219 1.174 sum -5.604 17.608 -14.109 23.249 Atomic orbital electron populations 1.22644 0.83755 1.01905 0.98283 1.88306 1.16946 1.26260 1.94785 1.23319 0.97252 0.85282 0.97654 1.21405 0.90541 0.96583 0.90906 1.43906 1.76146 1.03872 1.07317 1.18579 1.40467 0.79499 1.00101 0.90417 1.25223 0.98034 0.94801 0.97417 1.69890 1.45341 1.08372 1.29861 0.87016 0.80768 0.79112 0.82635 1.21495 1.23236 1.19735 1.20981 0.94026 0.94489 0.89240 1.22447 1.00701 0.94757 0.84939 1.45912 1.15807 1.51299 1.22280 1.16702 0.84675 0.79755 0.80942 1.90549 1.21687 1.50730 1.77330 1.21568 0.89871 1.07433 1.00322 1.70733 1.23871 1.10589 1.13831 1.27981 0.84568 1.00903 0.92762 1.84360 1.22598 1.55194 1.46204 1.23870 0.95746 0.92455 0.88204 1.19227 0.83006 0.97669 0.97741 1.22258 0.99934 1.00888 0.98571 1.21939 1.01276 1.00623 0.96435 1.22295 1.02227 0.92045 1.05238 0.95678 0.95105 0.90306 0.95481 0.94343 0.91826 0.92644 0.92962 0.92142 0.93754 0.91982 0.90697 0.76058 0.73103 0.93409 0.91509 0.87865 0.92267 0.91384 0.92346 0.87449 0.91579 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.67 16 2 O -0.35 -7.85 10.18 -35.23 -0.36 -8.20 16 3 C 0.04 0.87 6.28 37.16 0.23 1.11 16 4 C 0.13 2.80 4.99 -4.04 -0.02 2.78 16 5 N -0.59 -13.55 2.13 -173.23 -0.37 -13.92 16 6 C -0.26 -7.12 9.44 -15.06 -0.14 -7.27 16 7 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 8 C 0.05 1.32 5.31 -17.43 -0.09 1.23 16 9 N -0.89 -27.56 13.97 55.49 0.78 -26.78 16 10 Si 0.87 22.19 24.97 -169.99 -4.24 17.94 16 11 H -0.29 -7.16 6.65 56.52 0.38 -6.78 16 12 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 13 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.14 2.59 5.83 -4.04 -0.02 2.57 16 15 C 0.10 1.71 5.96 -4.04 -0.02 1.68 16 16 N -0.70 -10.65 5.55 -61.38 -0.34 -10.99 16 17 C 0.59 9.20 7.55 -12.52 -0.09 9.10 16 18 O -0.52 -8.86 9.83 5.27 0.05 -8.81 16 19 C -0.07 -0.98 6.83 -83.02 -0.57 -1.55 16 20 N -0.46 -5.59 11.07 -11.49 -0.13 -5.72 16 21 C 0.17 1.45 13.19 51.96 0.69 2.13 16 22 O -0.20 -2.02 10.19 6.54 0.07 -1.95 16 23 C 0.05 0.65 5.73 -35.08 -0.20 0.45 16 24 C 0.02 0.26 0.75 -155.66 -0.12 0.15 16 25 C -0.16 -1.78 8.20 37.16 0.30 -1.48 16 26 C -0.15 -1.23 8.07 37.16 0.30 -0.93 16 27 C -0.16 -1.87 8.24 37.16 0.31 -1.56 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.71 6.53 -51.93 -0.34 0.37 16 33 H 0.06 1.53 2.91 -51.93 -0.15 1.38 16 34 H 0.06 1.00 7.86 -51.93 -0.41 0.59 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.06 1.13 8.09 -51.92 -0.42 0.71 16 37 H 0.04 0.71 7.83 -51.93 -0.41 0.31 16 38 H 0.06 1.14 6.53 -51.93 -0.34 0.80 16 39 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.40 5.47 8.21 -40.82 -0.34 5.14 16 41 H 0.25 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 1.42 4.61 -51.93 -0.24 1.19 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.11 1.55 4.62 -51.93 -0.24 1.31 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -33.65 395.41 -4.88 -38.53 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.96 Total: 3.85 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 1.66 Total: 10.09 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.06 Total: -57.40 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.24 Total: -18.96 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.24 Total: 17.94 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.65 -4.88 -38.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332928012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.592 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds