Wall clock time and date at job start Sat Apr 11 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00107 * 2 1 4 4 C 1.53000 * 109.47275 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46817 * 65.00332 * 4 3 2 6 6 C 1.36938 * 119.99901 * 269.99893 * 5 4 3 7 7 H 1.08005 * 119.99990 * 145.61761 * 6 5 4 8 8 C 1.38805 * 120.00265 * 325.61405 * 6 5 4 9 9 N 1.31617 * 120.00355 * 156.65431 * 8 6 5 10 10 Si 1.86800 * 119.99823 * 336.65236 * 8 6 5 11 11 H 1.48505 * 109.46759 * 95.28760 * 10 8 6 12 12 H 1.48499 * 109.47408 * 215.28379 * 10 8 6 13 13 H 1.48493 * 109.47576 * 335.28728 * 10 8 6 14 14 C 1.46500 * 120.00058 * 89.99782 * 5 4 3 15 15 C 1.53002 * 109.47335 * 264.18226 * 14 5 4 16 16 N 1.46498 * 109.46987 * 180.40322 * 15 14 5 17 17 C 1.34780 * 119.99625 * 180.02562 * 16 15 14 18 18 O 1.21605 * 120.00214 * 359.97438 * 17 16 15 19 19 C 1.47422 * 119.99732 * 180.02562 * 17 16 15 20 20 N 1.36063 * 126.45123 * 4.78451 * 19 17 16 21 21 C 1.29934 * 108.47930 * 179.97438 * 20 19 17 22 22 O 1.34043 * 109.24290 * 0.02562 * 21 20 19 23 23 C 1.34253 * 108.22744 * 359.76682 * 22 21 20 24 24 C 1.50699 * 126.52762 * 180.22760 * 23 22 21 25 25 C 1.53000 * 109.47256 * 238.60688 * 24 23 22 26 26 C 1.53003 * 109.46962 * 358.60329 * 24 23 22 27 27 C 1.52999 * 109.47494 * 118.60440 * 24 23 22 28 28 H 1.08994 * 109.47011 * 299.99492 * 1 2 3 29 29 H 1.08996 * 109.47082 * 59.99938 * 1 2 3 30 30 H 1.09002 * 109.46993 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46517 * 60.00439 * 3 2 1 32 32 H 1.08996 * 109.47441 * 300.00123 * 3 2 1 33 33 H 1.09001 * 109.47220 * 305.00885 * 4 3 2 34 34 H 1.08999 * 109.47094 * 184.99690 * 4 3 2 35 35 H 0.96999 * 120.00105 * 179.97438 * 9 8 6 36 36 H 1.09009 * 109.47074 * 144.18095 * 14 5 4 37 37 H 1.09001 * 109.47435 * 24.18334 * 14 5 4 38 38 H 1.09001 * 109.47022 * 60.40348 * 15 14 5 39 39 H 1.09004 * 109.47109 * 300.40147 * 15 14 5 40 40 H 0.96996 * 120.00210 * 359.97438 * 16 15 14 41 41 H 1.07999 * 125.37818 * 180.02562 * 21 20 19 42 42 H 1.08992 * 109.47596 * 53.76005 * 25 24 23 43 43 H 1.08997 * 109.47299 * 173.76764 * 25 24 23 44 44 H 1.09000 * 109.46955 * 293.75961 * 25 24 23 45 45 H 1.08998 * 109.47169 * 60.00205 * 26 24 23 46 46 H 1.09001 * 109.47093 * 179.97438 * 26 24 23 47 47 H 1.09000 * 109.47109 * 299.99709 * 26 24 23 48 48 H 1.09000 * 109.46849 * 66.17649 * 27 24 23 49 49 H 1.08990 * 109.47305 * 186.18238 * 27 24 23 50 50 H 1.09003 * 109.46847 * 306.18608 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0977 -0.7974 -1.3345 7 1 3.8722 -1.3037 -2.2615 8 6 4.5104 -1.5268 -0.2280 9 7 4.2032 -2.8028 -0.1289 10 14 5.5018 -0.6974 1.1205 11 1 4.5888 -0.2534 2.2043 12 1 6.4915 -1.6586 1.6699 13 1 6.2133 0.4792 0.5597 14 6 4.2882 1.3999 -2.4130 15 6 3.0649 1.4765 -3.3289 16 7 3.3797 2.3045 -4.4957 17 6 2.4458 2.5144 -5.4446 18 8 1.3422 2.0162 -5.3324 19 6 2.7626 3.3472 -6.6191 20 7 3.9731 3.8892 -6.9230 21 6 3.8591 4.5556 -8.0325 22 8 2.5960 4.4681 -8.4727 23 6 1.9006 3.7146 -7.6060 24 6 0.4423 3.3478 -7.7056 25 6 -0.2946 3.8439 -6.4599 26 6 -0.1637 3.9998 -8.9500 27 6 0.3046 1.8275 -7.8080 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8464 -0.8899 33 1 3.8508 0.5684 0.8426 34 1 3.9784 2.1765 0.0902 35 1 4.4919 -3.3125 0.6442 36 1 5.1248 0.9648 -2.9598 37 1 4.5549 2.4025 -2.0785 38 1 2.2304 1.9182 -2.7843 39 1 2.7939 0.4732 -3.6578 40 1 4.2598 2.7022 -4.5851 41 1 4.6561 5.0949 -8.5227 42 1 -0.1049 4.9087 -6.3254 43 1 -1.3650 3.6779 -6.5807 44 1 0.0613 3.2983 -5.5859 45 1 0.3612 3.6464 -9.8375 46 1 -1.2184 3.7341 -9.0223 47 1 -0.0657 5.0829 -8.8770 48 1 0.6355 1.3691 -6.8760 49 1 -0.7383 1.5686 -7.9900 50 1 0.9188 1.4616 -8.6308 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332928012.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:36 Heat of formation + Delta-G solvation = -48.750551 kcal Electronic energy + Delta-G solvation = -30876.876163 eV Core-core repulsion = 26713.685489 eV Total energy + Delta-G solvation = -4163.190674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.50974 -40.71199 -39.10892 -38.01912 -37.42180 -35.88813 -35.59959 -33.65093 -31.47869 -30.71498 -29.38925 -28.22877 -28.22241 -27.16498 -26.16023 -24.78031 -23.89487 -23.44396 -22.35605 -21.78677 -20.47668 -19.27465 -18.72954 -17.82692 -17.76244 -17.28675 -17.03649 -16.84566 -16.50193 -16.31365 -16.11009 -15.76605 -15.60280 -15.42287 -15.18740 -14.81556 -14.74625 -14.41227 -14.27948 -14.21635 -13.62254 -13.24171 -13.13637 -13.12870 -12.94252 -12.65798 -12.64461 -12.60113 -12.45016 -12.29749 -12.18923 -12.05900 -12.01284 -11.83575 -11.67254 -11.60171 -11.34830 -10.90538 -10.53928 -10.36498 -10.11153 -9.85077 -8.82302 -8.06517 -5.42651 0.05119 1.06522 1.36202 1.46041 1.52193 1.56430 2.10057 2.22344 2.52158 3.06050 3.13699 3.17909 3.42054 3.52747 3.74214 3.92239 3.95470 4.07906 4.17479 4.21219 4.35682 4.38912 4.49880 4.52135 4.53781 4.56530 4.63428 4.65251 4.72501 4.73624 4.74848 4.84729 4.86366 4.95056 4.98007 4.99311 5.00243 5.09552 5.12094 5.20827 5.24401 5.34302 5.46365 5.69179 6.00518 6.25520 6.32013 6.57351 6.62557 7.04260 7.18816 7.72251 8.07848 9.13982 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.002864 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.002670 B = 9773.384889 C =10636.340239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.396 6.396 3 C 0.044 3.956 4 C 0.122 3.878 5 N -0.602 5.602 6 C -0.238 4.238 7 H 0.031 0.969 8 C -0.015 4.015 9 N -0.949 5.949 10 Si 0.943 3.057 11 H -0.279 1.279 12 H -0.316 1.316 13 H -0.250 1.250 14 C 0.142 3.858 15 C 0.120 3.880 16 N -0.699 5.699 17 C 0.587 3.413 18 O -0.543 6.543 19 C -0.095 4.095 20 N -0.493 5.493 21 C 0.193 3.807 22 O -0.194 6.194 23 C 0.053 3.947 24 C 0.021 3.979 25 C -0.156 4.156 26 C -0.139 4.139 27 C -0.158 4.158 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.098 0.902 35 H 0.257 0.743 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.032 0.968 40 H 0.414 0.586 41 H 0.306 0.694 42 H 0.053 0.947 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 21.272 -15.846 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.315 6.315 3 C -0.034 4.034 4 C -0.003 4.003 5 N -0.324 5.324 6 C -0.368 4.368 7 H 0.049 0.951 8 C -0.210 4.210 9 N -0.593 5.593 10 Si 0.773 3.227 11 H -0.207 1.207 12 H -0.245 1.245 13 H -0.174 1.174 14 C 0.016 3.984 15 C -0.006 4.006 16 N -0.350 5.350 17 C 0.374 3.626 18 O -0.423 6.423 19 C -0.214 4.214 20 N -0.222 5.222 21 C -0.035 4.035 22 O -0.080 6.080 23 C -0.004 4.004 24 C 0.021 3.979 25 C -0.213 4.213 26 C -0.196 4.196 27 C -0.215 4.215 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.251 0.749 41 H 0.320 0.680 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.094 0.906 49 H 0.099 0.901 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.632 20.550 -15.297 26.231 hybrid contribution 0.150 -0.074 0.350 0.388 sum -5.483 20.476 -14.947 25.937 Atomic orbital electron populations 1.22766 0.81558 1.02371 0.99996 1.88228 1.19641 1.28461 1.95196 1.23333 0.96041 0.84521 0.99527 1.21605 0.92036 0.97852 0.88825 1.43962 1.76701 1.02545 1.09216 1.18350 1.38448 0.81875 0.98120 0.95077 1.25846 0.99482 0.95314 1.00390 1.70044 1.47716 1.10431 1.31148 0.85890 0.78768 0.78254 0.79784 1.20720 1.24534 1.17353 1.21086 0.93865 0.95574 0.87888 1.21920 1.00173 0.92956 0.85557 1.45716 1.16406 1.51149 1.21701 1.17056 0.84311 0.79729 0.81473 1.90573 1.22489 1.51398 1.77839 1.21297 0.91280 1.08530 1.00260 1.70708 1.23378 1.12278 1.15801 1.29202 0.84632 0.98456 0.91230 1.84398 1.23158 1.54766 1.45670 1.24012 0.96165 0.92265 0.87970 1.19285 0.82750 0.97080 0.98800 1.22176 1.00763 1.00703 0.97616 1.21896 1.01935 1.00756 0.94998 1.22213 1.03034 0.92809 1.03472 0.92872 0.94263 0.90650 0.92344 0.93441 0.94297 0.88412 0.93373 0.92607 0.89769 0.92465 0.94915 0.74947 0.67961 0.92831 0.90069 0.90745 0.91888 0.90007 0.91644 0.90597 0.90107 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 11.01 113.37 1.25 2.28 16 2 O -0.40 -18.03 10.18 -148.98 -1.52 -19.55 16 3 C 0.04 1.66 6.28 71.98 0.45 2.11 16 4 C 0.12 4.92 4.99 86.38 0.43 5.35 16 5 N -0.60 -27.35 2.13 -701.99 -1.49 -28.84 16 6 C -0.24 -13.60 9.44 84.03 0.79 -12.80 16 7 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16 8 C -0.01 -0.86 5.31 84.86 0.45 -0.41 16 9 N -0.95 -61.23 13.97 21.65 0.30 -60.93 16 10 Si 0.94 46.49 24.97 68.60 1.71 48.21 16 11 H -0.28 -13.31 6.65 99.48 0.66 -12.64 16 12 H -0.32 -16.00 7.11 99.48 0.71 -15.29 16 13 H -0.25 -11.24 7.11 99.48 0.71 -10.53 16 14 C 0.14 5.13 5.83 86.38 0.50 5.64 16 15 C 0.12 4.32 5.96 86.38 0.52 4.84 16 16 N -0.70 -21.30 5.55 -466.37 -2.59 -23.89 16 17 C 0.59 18.57 7.55 86.66 0.65 19.22 16 18 O -0.54 -19.21 9.83 -4.05 -0.04 -19.25 16 19 C -0.10 -2.53 6.83 40.41 0.28 -2.25 16 20 N -0.49 -11.02 11.07 -305.16 -3.38 -14.40 16 21 C 0.19 2.71 13.19 130.52 1.72 4.43 16 22 O -0.19 -3.41 10.19 0.48 0.00 -3.40 16 23 C 0.05 1.22 5.73 25.19 0.14 1.36 16 24 C 0.02 0.44 0.75 -52.93 -0.04 0.40 16 25 C -0.16 -3.36 8.20 71.98 0.59 -2.77 16 26 C -0.14 -2.00 8.07 71.98 0.58 -1.42 16 27 C -0.16 -3.66 8.24 71.98 0.59 -3.06 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.67 6.53 -2.39 -0.02 1.66 16 33 H 0.04 1.79 2.91 -2.39 -0.01 1.78 16 34 H 0.10 3.10 7.86 -2.39 -0.02 3.08 16 35 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 36 H 0.06 2.07 8.09 -2.38 -0.02 2.05 16 37 H 0.08 2.42 7.83 -2.39 -0.02 2.40 16 38 H 0.06 2.11 6.53 -2.39 -0.02 2.10 16 39 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.41 10.93 8.21 -92.71 -0.76 10.17 16 41 H 0.31 0.37 8.06 -2.91 -0.02 0.34 16 42 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.07 2.09 4.61 -2.39 -0.01 2.08 16 45 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 48 H 0.08 2.29 4.62 -2.42 -0.01 2.28 16 49 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -78.41 395.41 2.07 -76.35 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.15 Total: 22.81 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 8.91 Total: 22.91 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -7.16 Total: -128.06 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -1.55 Total: -42.21 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.71 Total: 48.21 kcal Total: -78.41 2.07 -76.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332928012.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.595 kcal (2) G-P(sol) polarization free energy of solvation -78.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds