Wall clock time and date at job start Sat Apr 11 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46891 * 110.99917 * 2 1 4 4 C 1.53239 * 109.33853 * 172.74825 * 3 2 1 5 5 N 1.47081 * 108.52249 * 53.83093 * 4 3 2 6 6 C 1.34782 * 120.88069 * 128.82026 * 5 4 3 7 7 O 1.21346 * 119.99656 * 188.08559 * 6 5 4 8 8 C 1.49446 * 119.99784 * 8.08155 * 6 5 4 9 9 O 1.21346 * 120.00676 * 6.72695 * 8 6 5 10 10 N 1.34784 * 119.99800 * 186.72844 * 8 6 5 11 11 C 1.47017 * 125.64460 * 0.02562 * 10 8 6 12 12 C 1.54329 * 107.27048 * 178.90744 * 11 10 8 13 13 C 1.55158 * 102.93939 * 337.81190 * 12 11 10 14 14 O 1.42903 * 110.99976 * 277.42353 * 13 12 11 15 15 C 1.50705 * 111.00139 * 153.61437 * 13 12 11 16 16 H 1.07996 * 119.99821 * 3.17808 * 15 13 12 17 17 C 1.37877 * 119.99513 * 183.17500 * 15 13 12 18 18 N 1.31514 * 120.00086 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99690 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47106 * 59.99934 * 19 17 15 21 21 H 1.48504 * 109.46877 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47099 * 299.99975 * 19 17 15 23 23 C 1.47524 * 125.63929 * 179.97438 * 10 8 6 24 24 C 1.47077 * 118.23780 * 309.08745 * 5 4 3 25 25 C 1.46902 * 110.99799 * 235.70259 * 2 1 3 26 26 C 1.53003 * 109.49203 * 307.21086 * 25 2 1 27 27 C 1.52994 * 109.49614 * 67.26592 * 25 2 1 28 28 H 1.09005 * 109.47434 * 63.95184 * 1 2 3 29 29 H 1.09004 * 109.47386 * 183.94946 * 1 2 3 30 30 H 1.08997 * 109.47072 * 303.95018 * 1 2 3 31 31 H 1.09004 * 109.49354 * 52.79013 * 3 2 1 32 32 H 1.09005 * 109.52127 * 292.71858 * 3 2 1 33 33 H 1.09004 * 109.63095 * 294.12087 * 4 3 2 34 34 H 1.09010 * 109.78972 * 173.63746 * 4 3 2 35 35 H 1.09003 * 109.88780 * 59.49430 * 11 10 8 36 36 H 1.08999 * 110.01720 * 298.40013 * 11 10 8 37 37 H 1.08996 * 110.72375 * 219.44192 * 12 11 10 38 38 H 1.09007 * 110.71808 * 96.17179 * 12 11 10 39 39 H 0.96701 * 114.00078 * 176.82370 * 14 13 12 40 40 H 0.96999 * 119.99560 * 180.02562 * 18 17 15 41 41 H 1.09001 * 110.37042 * 85.33344 * 23 10 8 42 42 H 1.09000 * 110.40846 * 322.98686 * 23 10 8 43 43 H 1.08997 * 109.62754 * 170.61883 * 24 5 4 44 44 H 1.09002 * 109.63050 * 291.20388 * 24 5 4 45 45 H 1.08997 * 109.47207 * 60.00029 * 26 25 2 46 46 H 1.08997 * 109.47366 * 180.02562 * 26 25 2 47 47 H 1.09006 * 109.47144 * 300.00487 * 26 25 2 48 48 H 1.08997 * 109.47206 * 59.99674 * 27 25 2 49 49 H 1.09002 * 109.47478 * 179.97438 * 27 25 2 50 50 H 1.09004 * 109.46985 * 300.00078 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5163 1.3311 0.1825 5 7 4.0869 0.4460 -0.8443 6 6 5.1056 0.8583 -1.6246 7 8 5.4673 0.1761 -2.5607 8 6 5.7895 2.1555 -1.3368 9 8 5.5119 2.7783 -0.3331 10 7 6.7147 2.6338 -2.1924 11 6 7.1445 1.9854 -3.4398 12 6 8.1940 2.9065 -4.0970 13 6 7.8824 4.2911 -3.4698 14 8 6.8081 4.9349 -4.1579 15 6 9.1101 5.1650 -3.4530 16 1 10.0304 4.8118 -3.8941 17 6 9.0582 6.4154 -2.8744 18 7 7.9373 6.8457 -2.3378 19 14 10.5801 7.4984 -2.8529 20 1 11.0171 7.7658 -4.2468 21 1 10.2641 8.7827 -2.1776 22 1 11.6690 6.8074 -2.1167 23 6 7.4628 3.8952 -2.0324 24 6 3.5123 -0.8988 -1.0010 25 6 1.9954 -0.7728 -1.1330 26 6 1.3640 -2.1665 -1.1377 27 6 1.6580 -0.0551 -2.4413 28 1 -0.3634 0.4513 -0.9233 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.5739 0.8525 31 1 1.5456 1.9336 0.8184 32 1 1.7555 1.8536 -0.9477 33 1 3.7562 0.9449 1.1732 34 1 3.9281 2.3343 0.0711 35 1 6.2910 1.8613 -4.1064 36 1 7.5884 1.0141 -3.2217 37 1 8.0601 2.9339 -5.1783 38 1 9.2036 2.5853 -3.8404 39 1 6.5452 5.7816 -3.7720 40 1 7.9007 7.7255 -1.9311 41 1 8.3435 3.7377 -1.4099 42 1 6.8233 4.6640 -1.5986 43 1 3.9187 -1.3685 -1.8967 44 1 3.7517 -1.5036 -0.1263 45 1 0.2820 -2.0749 -1.2321 46 1 1.7551 -2.7398 -1.9782 47 1 1.6054 -2.6779 -0.2058 48 1 2.1087 0.9373 -2.4380 49 1 2.0492 -0.6285 -3.2818 50 1 0.5761 0.0376 -2.5364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336523841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:42 Heat of formation + Delta-G solvation = -78.408706 kcal Electronic energy + Delta-G solvation = -31813.151897 eV Core-core repulsion = 27648.675149 eV Total energy + Delta-G solvation = -4164.476748 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96151 -39.57606 -38.11923 -37.32945 -35.10556 -34.08856 -33.27963 -32.23588 -30.27155 -29.22643 -28.06401 -27.57176 -27.51861 -25.84464 -24.73332 -23.33831 -22.78390 -21.57375 -19.70832 -19.13262 -18.50013 -17.27043 -16.92176 -16.79196 -16.17378 -15.93533 -15.50286 -15.15346 -15.04123 -14.75736 -14.67144 -14.45692 -14.24164 -13.79264 -13.49974 -13.14801 -13.01246 -12.87197 -12.81539 -12.43908 -12.32320 -12.24502 -12.11454 -11.83773 -11.67608 -11.57722 -11.51026 -11.38278 -11.25450 -11.07197 -10.97016 -10.93110 -10.58623 -10.53028 -10.52511 -10.22913 -9.40936 -8.89582 -8.86870 -8.71267 -8.47126 -8.37220 -7.91744 -6.33052 -4.42388 1.76882 2.54745 3.20025 3.25789 3.27812 3.49906 3.61076 3.80172 4.23112 4.42015 4.58224 4.64788 4.78726 4.85935 4.94760 5.06034 5.19734 5.28840 5.32074 5.36608 5.42844 5.46691 5.52010 5.54446 5.58236 5.62481 5.72331 5.77310 5.82899 5.84939 5.88134 6.01681 6.05812 6.13127 6.27241 6.37393 6.48720 6.70560 6.77134 6.78445 6.82498 6.87821 7.14394 7.22568 7.27948 7.69607 7.78885 7.96570 8.04562 8.41565 8.61386 9.26458 9.36753 10.74294 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024265 B = 0.002812 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.651214 B = 9953.741784 C =10433.049747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.531 5.531 3 C 0.035 3.965 4 C 0.080 3.920 5 N -0.587 5.587 6 C 0.512 3.488 7 O -0.520 6.520 8 C 0.509 3.491 9 O -0.530 6.530 10 N -0.571 5.571 11 C 0.111 3.889 12 C -0.122 4.122 13 C 0.249 3.751 14 O -0.582 6.582 15 C -0.537 4.537 16 H 0.068 0.932 17 C 0.071 3.929 18 N -0.895 5.895 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.091 3.909 24 C 0.125 3.875 25 C 0.092 3.908 26 C -0.140 4.140 27 C -0.178 4.178 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.145 0.855 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.383 0.617 40 H 0.272 0.728 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.064 0.936 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.868 -13.885 3.876 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.256 5.256 3 C -0.093 4.093 4 C -0.042 4.042 5 N -0.322 5.322 6 C 0.295 3.705 7 O -0.395 6.395 8 C 0.292 3.708 9 O -0.411 6.411 10 N -0.302 5.302 11 C -0.012 4.012 12 C -0.160 4.160 13 C 0.209 3.791 14 O -0.391 6.391 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.534 5.534 19 Si 0.733 3.267 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.030 4.030 24 C 0.003 3.997 25 C 0.002 3.998 26 C -0.198 4.198 27 C -0.237 4.237 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.234 0.766 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.713 -14.544 4.081 19.744 hybrid contribution 0.302 1.465 -0.180 1.507 sum -12.411 -13.079 3.901 18.448 Atomic orbital electron populations 1.22460 0.87559 1.02340 1.00560 1.62242 1.07697 1.13728 1.41893 1.22631 0.95873 0.89313 1.01513 1.22913 0.91530 0.98871 0.90887 1.47915 1.32911 1.15465 1.35859 1.20347 0.80817 0.87153 0.82184 1.90706 1.64112 1.56769 1.27949 1.19598 0.81291 0.85933 0.83972 1.90464 1.63247 1.60222 1.27170 1.48709 1.36246 1.23752 1.21448 1.22146 0.98292 0.95787 0.84938 1.22721 0.97569 0.95254 1.00415 1.19614 0.85951 0.88497 0.85086 1.86110 1.54579 1.39888 1.58541 1.21444 0.96736 1.00607 1.38773 0.91392 1.25086 0.96775 0.97759 0.93598 1.69633 1.25945 1.20026 1.37772 0.86432 0.82491 0.79352 0.78469 1.19960 1.21069 1.19986 1.23536 0.94768 0.82382 1.02311 1.21713 0.91090 0.83645 1.03295 1.21333 0.94664 0.94568 0.89268 1.21882 1.00719 0.94541 1.02614 1.22418 1.01391 1.01883 0.98014 0.95395 0.90953 0.91419 0.89425 0.93833 0.90839 0.83874 0.91450 0.91446 0.90506 0.90326 0.76596 0.91840 0.91342 0.89233 0.88577 0.90592 0.91937 0.91775 0.91501 0.92008 0.91687 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 8.76 60.06 0.53 0.68 16 2 N -0.53 -5.36 4.68 -227.14 -1.06 -6.42 16 3 C 0.04 0.39 5.25 -3.71 -0.02 0.37 16 4 C 0.08 1.07 6.11 -3.60 -0.02 1.04 16 5 N -0.59 -8.46 2.49 -173.24 -0.43 -8.89 16 6 C 0.51 8.92 7.70 -11.58 -0.09 8.83 16 7 O -0.52 -9.58 13.64 5.50 0.08 -9.51 16 8 C 0.51 10.12 7.77 -11.58 -0.09 10.03 16 9 O -0.53 -11.03 13.46 5.50 0.07 -10.95 16 10 N -0.57 -11.95 3.33 -170.96 -0.57 -12.52 16 11 C 0.11 2.14 5.49 -3.06 -0.02 2.12 16 12 C -0.12 -2.46 6.13 -24.89 -0.15 -2.61 16 13 C 0.25 5.95 0.88 -89.63 -0.08 5.87 16 14 O -0.58 -14.68 13.17 -35.23 -0.46 -15.14 16 15 C -0.54 -13.68 8.26 -34.44 -0.28 -13.97 16 16 H 0.07 1.69 7.78 -52.49 -0.41 1.29 16 17 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 18 N -0.89 -23.18 10.69 55.43 0.59 -22.59 16 19 Si 0.91 19.96 29.54 -169.99 -5.02 14.93 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 C 0.09 2.12 5.51 -2.49 -0.01 2.10 16 24 C 0.13 1.49 5.25 -3.84 -0.02 1.47 16 25 C 0.09 0.93 0.68 -131.71 -0.09 0.84 16 26 C -0.14 -1.07 8.00 37.16 0.30 -0.78 16 27 C -0.18 -1.93 7.67 37.15 0.28 -1.65 16 28 H 0.03 0.23 6.53 -51.93 -0.34 -0.11 16 29 H 0.07 0.51 6.18 -51.93 -0.32 0.18 16 30 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.04 0.53 6.10 -51.93 -0.32 0.21 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.14 2.27 4.45 -54.18 -0.24 2.03 16 35 H 0.07 1.31 7.74 -51.93 -0.40 0.91 16 36 H 0.07 1.21 7.56 -51.93 -0.39 0.82 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 38 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 39 H 0.38 9.88 7.25 45.56 0.33 10.21 16 40 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 41 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 42 H 0.09 2.30 7.48 -51.93 -0.39 1.91 16 43 H 0.10 1.19 7.04 -51.93 -0.37 0.83 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.43 6.31 -51.93 -0.33 0.10 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.81 5.93 -51.93 -0.31 0.50 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.06 0.55 6.60 -51.93 -0.34 0.21 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -27.62 377.38 -8.15 -35.77 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -7.17 Total: 13.58 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 0.14 Total: 16.05 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -1.47 Total: -50.42 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.31 Total: -35.60 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -27.62 -8.15 -35.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336523841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.641 kcal (2) G-P(sol) polarization free energy of solvation -27.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds