Wall clock time and date at job start Sat Apr 11 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46891 * 110.99917 * 2 1 4 4 C 1.53239 * 109.33853 * 172.74825 * 3 2 1 5 5 N 1.47081 * 108.52249 * 53.83093 * 4 3 2 6 6 C 1.34782 * 120.88069 * 128.82026 * 5 4 3 7 7 O 1.21346 * 119.99656 * 188.08559 * 6 5 4 8 8 C 1.49446 * 119.99784 * 8.08155 * 6 5 4 9 9 O 1.21346 * 120.00676 * 6.72695 * 8 6 5 10 10 N 1.34784 * 119.99800 * 186.72844 * 8 6 5 11 11 C 1.47017 * 125.64460 * 0.02562 * 10 8 6 12 12 C 1.54329 * 107.27048 * 178.90744 * 11 10 8 13 13 C 1.55158 * 102.93939 * 337.81190 * 12 11 10 14 14 O 1.42903 * 110.99976 * 277.42353 * 13 12 11 15 15 C 1.50705 * 111.00139 * 153.61437 * 13 12 11 16 16 H 1.07996 * 119.99821 * 3.17808 * 15 13 12 17 17 C 1.37877 * 119.99513 * 183.17500 * 15 13 12 18 18 N 1.31514 * 120.00086 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99690 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47106 * 59.99934 * 19 17 15 21 21 H 1.48504 * 109.46877 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47099 * 299.99975 * 19 17 15 23 23 C 1.47524 * 125.63929 * 179.97438 * 10 8 6 24 24 C 1.47077 * 118.23780 * 309.08745 * 5 4 3 25 25 C 1.46902 * 110.99799 * 235.70259 * 2 1 3 26 26 C 1.53003 * 109.49203 * 307.21086 * 25 2 1 27 27 C 1.52994 * 109.49614 * 67.26592 * 25 2 1 28 28 H 1.09005 * 109.47434 * 63.95184 * 1 2 3 29 29 H 1.09004 * 109.47386 * 183.94946 * 1 2 3 30 30 H 1.08997 * 109.47072 * 303.95018 * 1 2 3 31 31 H 1.09004 * 109.49354 * 52.79013 * 3 2 1 32 32 H 1.09005 * 109.52127 * 292.71858 * 3 2 1 33 33 H 1.09004 * 109.63095 * 294.12087 * 4 3 2 34 34 H 1.09010 * 109.78972 * 173.63746 * 4 3 2 35 35 H 1.09003 * 109.88780 * 59.49430 * 11 10 8 36 36 H 1.08999 * 110.01720 * 298.40013 * 11 10 8 37 37 H 1.08996 * 110.72375 * 219.44192 * 12 11 10 38 38 H 1.09007 * 110.71808 * 96.17179 * 12 11 10 39 39 H 0.96701 * 114.00078 * 176.82370 * 14 13 12 40 40 H 0.96999 * 119.99560 * 180.02562 * 18 17 15 41 41 H 1.09001 * 110.37042 * 85.33344 * 23 10 8 42 42 H 1.09000 * 110.40846 * 322.98686 * 23 10 8 43 43 H 1.08997 * 109.62754 * 170.61883 * 24 5 4 44 44 H 1.09002 * 109.63050 * 291.20388 * 24 5 4 45 45 H 1.08997 * 109.47207 * 60.00029 * 26 25 2 46 46 H 1.08997 * 109.47366 * 180.02562 * 26 25 2 47 47 H 1.09006 * 109.47144 * 300.00487 * 26 25 2 48 48 H 1.08997 * 109.47206 * 59.99674 * 27 25 2 49 49 H 1.09002 * 109.47478 * 179.97438 * 27 25 2 50 50 H 1.09004 * 109.46985 * 300.00078 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5163 1.3311 0.1825 5 7 4.0869 0.4460 -0.8443 6 6 5.1056 0.8583 -1.6246 7 8 5.4673 0.1761 -2.5607 8 6 5.7895 2.1555 -1.3368 9 8 5.5119 2.7783 -0.3331 10 7 6.7147 2.6338 -2.1924 11 6 7.1445 1.9854 -3.4398 12 6 8.1940 2.9065 -4.0970 13 6 7.8824 4.2911 -3.4698 14 8 6.8081 4.9349 -4.1579 15 6 9.1101 5.1650 -3.4530 16 1 10.0304 4.8118 -3.8941 17 6 9.0582 6.4154 -2.8744 18 7 7.9373 6.8457 -2.3378 19 14 10.5801 7.4984 -2.8529 20 1 11.0171 7.7658 -4.2468 21 1 10.2641 8.7827 -2.1776 22 1 11.6690 6.8074 -2.1167 23 6 7.4628 3.8952 -2.0324 24 6 3.5123 -0.8988 -1.0010 25 6 1.9954 -0.7728 -1.1330 26 6 1.3640 -2.1665 -1.1377 27 6 1.6580 -0.0551 -2.4413 28 1 -0.3634 0.4513 -0.9233 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.5739 0.8525 31 1 1.5456 1.9336 0.8184 32 1 1.7555 1.8536 -0.9477 33 1 3.7562 0.9449 1.1732 34 1 3.9281 2.3343 0.0711 35 1 6.2910 1.8613 -4.1064 36 1 7.5884 1.0141 -3.2217 37 1 8.0601 2.9339 -5.1783 38 1 9.2036 2.5853 -3.8404 39 1 6.5452 5.7816 -3.7720 40 1 7.9007 7.7255 -1.9311 41 1 8.3435 3.7377 -1.4099 42 1 6.8233 4.6640 -1.5986 43 1 3.9187 -1.3685 -1.8967 44 1 3.7517 -1.5036 -0.1263 45 1 0.2820 -2.0749 -1.2321 46 1 1.7551 -2.7398 -1.9782 47 1 1.6054 -2.6779 -0.2058 48 1 2.1087 0.9373 -2.4380 49 1 2.0492 -0.6285 -3.2818 50 1 0.5761 0.0376 -2.5364 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336523841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:41 Heat of formation + Delta-G solvation = -98.592925 kcal Electronic energy + Delta-G solvation = -31814.027150 eV Core-core repulsion = 27648.675149 eV Total energy + Delta-G solvation = -4165.352001 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.23591 -40.85303 -39.53648 -38.96880 -36.52450 -35.63867 -34.20930 -34.12660 -31.98766 -30.17471 -29.77370 -28.67295 -28.33010 -27.45042 -25.92394 -24.68276 -23.86410 -23.00509 -21.52386 -20.49443 -19.47808 -19.16598 -18.30038 -18.20916 -17.46145 -17.13972 -17.00996 -16.77984 -16.31895 -16.13749 -15.87703 -15.48720 -15.44377 -15.08214 -14.86250 -14.70292 -14.60396 -14.24379 -14.01031 -13.75525 -13.52294 -13.42394 -13.23267 -13.07493 -12.98556 -12.82116 -12.68622 -12.63218 -12.39181 -12.33620 -12.29427 -12.20996 -12.16100 -12.12014 -11.96367 -11.77405 -11.22392 -10.66756 -10.42095 -10.28983 -9.97469 -9.62848 -9.25499 -8.26255 -6.42821 0.28731 1.17877 1.45335 1.46112 1.53842 2.04171 2.28047 2.40166 2.87090 2.99403 3.07638 3.63269 3.75063 3.79511 3.94073 3.99988 4.04797 4.13433 4.19015 4.29017 4.31089 4.45346 4.50168 4.62292 4.62964 4.64717 4.67662 4.71285 4.76815 4.78288 4.90248 4.92635 4.96937 5.01420 5.03407 5.04414 5.12525 5.20705 5.27425 5.31730 5.37106 5.41734 5.73956 5.86449 6.02133 6.02480 6.11831 6.27252 6.54959 6.65814 6.87002 7.27688 7.35366 8.79484 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024265 B = 0.002812 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.651214 B = 9953.741784 C =10433.049747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.533 5.533 3 C 0.042 3.958 4 C 0.080 3.920 5 N -0.577 5.577 6 C 0.514 3.486 7 O -0.533 6.533 8 C 0.502 3.498 9 O -0.545 6.545 10 N -0.580 5.580 11 C 0.120 3.880 12 C -0.115 4.115 13 C 0.234 3.766 14 O -0.589 6.589 15 C -0.556 4.556 16 H 0.070 0.930 17 C 0.029 3.971 18 N -0.915 5.915 19 Si 0.965 3.035 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.270 1.270 23 C 0.106 3.894 24 C 0.121 3.879 25 C 0.094 3.906 26 C -0.134 4.134 27 C -0.174 4.174 28 H 0.026 0.974 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.031 0.969 33 H 0.082 0.918 34 H 0.118 0.882 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.376 0.624 40 H 0.271 0.729 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.033 0.967 49 H 0.062 0.938 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.731 -15.699 4.209 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.257 5.257 3 C -0.087 4.087 4 C -0.041 4.041 5 N -0.310 5.310 6 C 0.296 3.704 7 O -0.410 6.410 8 C 0.286 3.714 9 O -0.426 6.426 10 N -0.312 5.312 11 C -0.002 4.002 12 C -0.153 4.153 13 C 0.194 3.806 14 O -0.397 6.397 15 C -0.595 4.595 16 H 0.088 0.912 17 C -0.172 4.172 18 N -0.554 5.554 19 Si 0.791 3.209 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.195 1.195 23 C -0.016 4.016 24 C 0.000 4.000 25 C 0.003 3.997 26 C -0.191 4.191 27 C -0.233 4.233 28 H 0.045 0.955 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.135 0.865 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.226 0.774 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.052 0.948 49 H 0.081 0.919 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.612 -16.395 4.427 21.764 hybrid contribution 0.484 2.019 -0.223 2.088 sum -13.128 -14.376 4.204 19.917 Atomic orbital electron populations 1.22539 0.85869 1.03588 1.00896 1.62261 1.09140 1.12630 1.41703 1.22526 0.94140 0.90423 1.01565 1.22830 0.93114 0.97307 0.90887 1.48007 1.31557 1.16542 1.34887 1.19838 0.81653 0.86081 0.82805 1.90691 1.64954 1.56744 1.28616 1.20199 0.80884 0.86797 0.83498 1.90481 1.63425 1.60988 1.27697 1.48742 1.36772 1.23253 1.22400 1.22134 0.97952 0.96055 0.84099 1.22728 0.98658 0.93102 1.00798 1.19840 0.85205 0.89895 0.85695 1.86103 1.55193 1.39588 1.58860 1.21738 0.97362 1.01323 1.39031 0.91161 1.25804 0.99249 0.98941 0.93254 1.69740 1.27394 1.20176 1.38075 0.85493 0.79408 0.77624 0.78418 1.19641 1.21016 1.19484 1.23100 0.93887 0.82853 1.01753 1.21977 0.92374 0.81940 1.03734 1.21367 0.93427 0.96051 0.88809 1.21855 1.01300 0.92658 1.03328 1.22381 1.02001 1.00328 0.98551 0.95527 0.89329 0.90561 0.87753 0.95071 0.89936 0.86479 0.91685 0.89699 0.89697 0.88867 0.77385 0.91924 0.92393 0.92320 0.89028 0.89162 0.90650 0.91053 0.90849 0.94785 0.91856 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.76 127.69 1.12 1.36 16 2 N -0.53 -9.49 4.68 -872.53 -4.08 -13.57 16 3 C 0.04 0.89 5.25 86.38 0.45 1.34 16 4 C 0.08 2.12 6.11 86.35 0.53 2.64 16 5 N -0.58 -16.31 2.49 -820.37 -2.04 -18.35 16 6 C 0.51 17.94 7.70 87.27 0.67 18.61 16 7 O -0.53 -19.40 13.64 -3.23 -0.04 -19.45 16 8 C 0.50 20.41 7.77 87.27 0.68 21.09 16 9 O -0.54 -23.44 13.46 -3.23 -0.04 -23.48 16 10 N -0.58 -24.79 3.33 -813.15 -2.71 -27.49 16 11 C 0.12 4.58 5.49 86.73 0.48 5.05 16 12 C -0.12 -4.60 6.13 31.78 0.19 -4.41 16 13 C 0.23 11.34 0.88 -10.15 -0.01 11.33 16 14 O -0.59 -30.44 13.17 -148.98 -1.96 -32.40 16 15 C -0.56 -28.55 8.26 25.60 0.21 -28.33 16 16 H 0.07 3.48 7.78 -2.91 -0.02 3.46 16 17 C 0.03 1.47 5.29 84.65 0.45 1.91 16 18 N -0.91 -48.47 10.69 21.45 0.23 -48.24 16 19 Si 0.97 40.98 29.54 68.60 2.03 43.01 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 C 0.11 5.11 5.51 86.83 0.48 5.59 16 24 C 0.12 2.68 5.25 86.20 0.45 3.13 16 25 C 0.09 1.68 0.68 3.46 0.00 1.69 16 26 C -0.13 -1.62 8.00 71.98 0.58 -1.05 16 27 C -0.17 -3.53 7.67 71.98 0.55 -2.98 16 28 H 0.03 0.36 6.53 -2.38 -0.02 0.35 16 29 H 0.09 0.90 6.18 -2.38 -0.01 0.89 16 30 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 31 H 0.10 1.86 8.07 -2.38 -0.02 1.84 16 32 H 0.03 0.75 6.10 -2.38 -0.01 0.73 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.12 3.81 4.45 -38.08 -0.17 3.64 16 35 H 0.06 2.51 7.74 -2.39 -0.02 2.50 16 36 H 0.08 2.96 7.56 -2.39 -0.02 2.94 16 37 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.09 3.42 8.03 -2.38 -0.02 3.41 16 39 H 0.38 20.16 7.25 -74.06 -0.54 19.62 16 40 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 41 H 0.06 2.85 8.03 -2.39 -0.02 2.83 16 42 H 0.06 3.16 7.48 -2.39 -0.02 3.14 16 43 H 0.09 2.14 7.04 -2.39 -0.02 2.13 16 44 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.07 0.75 6.31 -2.39 -0.02 0.73 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 48 H 0.03 0.88 5.93 -2.39 -0.01 0.86 16 49 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.07 1.22 6.60 -2.38 -0.02 1.20 16 Total: -1.00 -59.81 377.38 -1.52 -61.33 By element: Atomic # 1 Polarization: 41.41 SS G_CDS: 0.27 Total: 41.68 kcal Atomic # 6 Polarization: 30.14 SS G_CDS: 6.83 Total: 36.97 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -8.60 Total: -107.65 kcal Atomic # 8 Polarization: -73.29 SS G_CDS: -2.05 Total: -75.33 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -59.81 -1.52 -61.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336523841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.260 kcal (2) G-P(sol) polarization free energy of solvation -59.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds