Wall clock time and date at job start Sat Apr 11 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 110.45291 * 2 1 4 4 N 1.46500 * 109.47197 * 59.29685 * 3 2 1 5 5 C 1.34771 * 119.99609 * 179.97438 * 4 3 2 6 6 O 1.21351 * 120.00749 * 359.97438 * 5 4 3 7 7 C 1.49457 * 119.99550 * 179.97438 * 5 4 3 8 8 O 1.21348 * 120.00212 * 0.02562 * 7 5 4 9 9 N 1.34780 * 119.99704 * 180.02562 * 7 5 4 10 10 C 1.46503 * 119.99823 * 180.27511 * 9 7 5 11 11 C 1.53039 * 109.45901 * 274.79145 * 10 9 7 12 12 C 1.53194 * 109.30894 * 178.61300 * 11 10 9 13 13 N 1.46927 * 108.77514 * 54.63932 * 12 11 10 14 14 C 1.36937 * 120.62967 * 126.37018 * 13 12 11 15 15 H 1.08001 * 119.99170 * 207.69494 * 14 13 12 16 16 C 1.38807 * 120.00421 * 27.69215 * 14 13 12 17 17 N 1.31617 * 119.99905 * 17.35620 * 16 14 13 18 18 Si 1.86798 * 120.00330 * 197.35198 * 16 14 13 19 19 H 1.48495 * 109.47054 * 89.99858 * 18 16 14 20 20 H 1.48498 * 109.47203 * 210.00462 * 18 16 14 21 21 H 1.48508 * 109.46835 * 330.00341 * 18 16 14 22 22 C 1.46924 * 118.73721 * 306.38628 * 13 12 11 23 23 C 1.53041 * 109.46053 * 154.72147 * 10 9 7 24 24 C 1.54504 * 110.51552 * 237.39386 * 2 1 3 25 25 C 1.54477 * 104.06383 * 241.21767 * 24 2 1 26 26 O 1.44429 * 104.80307 * 23.97850 * 25 24 2 27 27 C 1.44650 * 105.36698 * 319.56354 * 26 25 24 28 28 H 1.08998 * 109.46798 * 60.70341 * 1 2 3 29 29 H 1.09002 * 109.46441 * 180.70085 * 1 2 3 30 30 H 1.08994 * 109.47391 * 300.70187 * 1 2 3 31 31 H 1.08997 * 109.47124 * 299.29575 * 3 2 1 32 32 H 1.09001 * 109.46507 * 179.29495 * 3 2 1 33 33 H 0.97005 * 119.99679 * 359.97438 * 4 3 2 34 34 H 0.96994 * 120.00076 * 359.97438 * 9 7 5 35 35 H 1.09004 * 109.45647 * 34.75288 * 10 9 7 36 36 H 1.08992 * 109.49651 * 298.56709 * 11 10 9 37 37 H 1.09000 * 109.49303 * 58.66435 * 11 10 9 38 38 H 1.09004 * 109.59117 * 294.84879 * 12 11 10 39 39 H 1.09000 * 109.58486 * 174.42110 * 12 11 10 40 40 H 0.96994 * 120.00250 * 179.97438 * 17 16 14 41 41 H 1.09009 * 109.58792 * 293.82520 * 22 13 12 42 42 H 1.08997 * 109.58690 * 173.39955 * 22 13 12 43 43 H 1.08995 * 109.49873 * 301.33889 * 23 10 9 44 44 H 1.09000 * 109.49697 * 61.43500 * 23 10 9 45 45 H 1.09000 * 110.51072 * 359.86176 * 24 2 1 46 46 H 1.08998 * 110.51269 * 122.43328 * 24 2 1 47 47 H 1.08998 * 110.37518 * 142.81026 * 25 24 2 48 48 H 1.09005 * 110.37510 * 265.03615 * 25 24 2 49 49 H 1.08997 * 110.34326 * 281.59625 * 27 26 25 50 50 H 1.09000 * 110.50473 * 159.18380 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4336 0.0000 4 7 1.5746 2.1376 1.1876 5 6 1.9202 3.4229 1.3995 6 8 2.6378 3.9970 0.6070 7 6 1.4198 4.1413 2.6108 8 8 0.7026 3.5672 3.4036 9 7 1.7650 5.4268 2.8225 10 6 1.2793 6.1291 4.0129 11 6 -0.1101 6.7062 3.7330 12 6 -0.6292 7.4100 4.9908 13 7 0.3627 8.4057 5.4190 14 6 -0.0002 9.7110 5.6181 15 1 0.7270 10.4992 5.4899 16 6 -1.3026 10.0212 5.9847 17 7 -2.0905 9.0850 6.4695 18 14 -1.9372 11.7673 5.7899 19 1 -2.5419 11.9268 4.4431 20 1 -2.9627 12.0400 6.8287 21 1 -0.8110 12.7231 5.9432 22 6 1.7514 7.9744 5.6290 23 6 2.2438 7.2643 4.3641 24 6 2.0715 -0.7798 -1.2190 25 6 2.8788 -1.9393 -0.5944 26 8 2.3119 -2.1165 0.7221 27 6 2.0713 -0.7795 1.2190 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3632 -1.0276 0.0126 30 1 -0.3634 0.5247 0.8836 31 1 1.7205 1.9498 -0.8962 32 1 3.1545 1.4149 0.0126 33 1 1.0013 1.6786 1.8213 34 1 2.3386 5.8855 2.1890 35 1 1.2209 5.4309 4.8479 36 1 -0.0481 7.4231 2.9143 37 1 -0.7908 5.8997 3.4602 38 1 -0.7778 6.6776 5.7844 39 1 -1.5733 7.9071 4.7681 40 1 -3.0005 9.3017 6.7260 41 1 1.7969 7.2880 6.4746 42 1 2.3780 8.8439 5.8274 43 1 3.2385 6.8551 4.5405 44 1 2.2837 7.9760 3.5395 45 1 1.2492 -1.1674 -1.8204 46 1 2.7181 -0.1433 -1.8230 47 1 2.7576 -2.8473 -1.1851 48 1 3.9331 -1.6722 -0.5226 49 1 3.0010 -0.3335 1.5722 50 1 1.3301 -0.7967 2.0180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342075898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:50 Heat of formation + Delta-G solvation = -101.109240 kcal Electronic energy + Delta-G solvation = -29879.772386 eV Core-core repulsion = 25714.311269 eV Total energy + Delta-G solvation = -4165.461117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.95389 -40.15704 -38.74555 -37.34143 -36.10615 -34.58543 -33.21354 -32.15374 -30.26082 -30.15370 -29.58427 -27.72801 -26.65690 -25.36747 -23.91167 -23.01431 -22.29901 -21.63274 -20.41769 -20.05538 -19.48260 -18.37578 -17.10017 -16.81124 -16.52463 -16.34208 -16.10440 -15.60164 -15.50281 -15.14460 -14.77892 -14.60717 -14.22266 -13.99277 -13.73345 -13.57662 -13.54366 -13.37201 -13.04490 -12.88951 -12.62934 -12.46665 -12.29545 -11.93269 -11.75232 -11.53716 -11.52917 -11.28582 -11.24164 -11.14974 -10.96635 -10.76055 -10.45147 -10.26554 -10.19472 -10.12496 -9.81935 -9.80110 -9.55820 -9.46951 -8.87510 -8.46509 -6.72487 -5.80849 -3.23622 1.38822 2.27494 3.20197 3.37164 3.43531 3.44227 3.45294 3.56476 3.94995 4.09260 4.22571 4.45749 4.47856 4.49456 4.62113 4.69519 5.05046 5.09829 5.15800 5.19002 5.21757 5.27289 5.32215 5.36182 5.40592 5.40894 5.48171 5.53833 5.55185 5.74754 5.75120 5.89334 6.00830 6.16136 6.21438 6.29039 6.35179 6.51267 6.60846 6.67514 6.72374 6.88384 6.88762 7.31867 7.38080 7.63842 7.68024 7.77948 8.04526 8.42414 9.18433 9.81597 10.37736 11.27814 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.001926 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.463944 B =14537.801711 C =14770.003725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C 0.132 3.868 4 N -0.704 5.704 5 C 0.509 3.491 6 O -0.521 6.521 7 C 0.502 3.498 8 O -0.522 6.522 9 N -0.690 5.690 10 C 0.148 3.852 11 C -0.147 4.147 12 C 0.173 3.827 13 N -0.592 5.592 14 C -0.254 4.254 15 H 0.067 0.933 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.903 3.097 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.279 1.279 22 C 0.149 3.851 23 C -0.140 4.140 24 C -0.143 4.143 25 C 0.044 3.956 26 O -0.372 6.372 27 C 0.050 3.950 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.413 0.587 34 H 0.407 0.593 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.022 0.978 39 H 0.091 0.909 40 H 0.254 0.746 41 H 0.021 0.979 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.333 -20.157 -15.344 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 C 0.008 3.992 4 N -0.359 5.359 5 C 0.290 3.710 6 O -0.397 6.397 7 C 0.282 3.718 8 O -0.398 6.398 9 N -0.341 5.341 10 C 0.045 3.955 11 C -0.188 4.188 12 C 0.047 3.953 13 N -0.315 5.315 14 C -0.384 4.384 15 H 0.085 0.915 16 C -0.197 4.197 17 N -0.545 5.545 18 Si 0.733 3.267 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.204 1.204 22 C 0.022 3.978 23 C -0.180 4.180 24 C -0.181 4.181 25 C -0.033 4.033 26 O -0.291 6.291 27 C -0.027 4.027 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.250 0.750 34 H 0.243 0.757 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.111 0.889 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.122 -20.307 -15.145 26.925 hybrid contribution -0.356 1.059 -0.319 1.162 sum 8.766 -19.248 -15.465 26.201 Atomic orbital electron populations 1.21894 0.92389 1.02799 1.02730 1.22237 0.97754 0.94401 0.96560 1.21529 0.99290 0.90214 0.88118 1.45783 1.51881 1.11958 1.26256 1.20408 0.81196 0.82635 0.86808 1.90756 1.35952 1.66567 1.46395 1.19967 0.82165 0.83428 0.86274 1.90775 1.36152 1.66794 1.46073 1.46200 1.50266 1.11065 1.26575 1.21250 0.95091 0.93323 0.85796 1.22596 0.94655 0.99406 1.02120 1.20776 0.94011 0.90317 0.90189 1.44113 1.03332 1.06556 1.77513 1.19188 0.95669 0.82901 1.40634 0.91544 1.25056 0.98517 0.97459 0.98624 1.70030 1.07800 1.32425 1.44295 0.86278 0.78563 0.84424 0.77419 1.21447 1.21763 1.20422 1.20844 0.87841 0.96682 0.92471 1.22370 0.97119 0.96853 1.01675 1.23012 1.00848 0.97164 0.97104 1.23427 0.96925 0.98810 0.84157 1.89180 1.83069 1.25832 1.30996 1.23649 1.00543 0.82625 0.95833 0.91799 0.91454 0.91937 0.90378 0.90627 0.74981 0.75727 0.89543 0.92373 0.92753 0.96005 0.89064 0.93550 0.96070 0.92137 0.92373 0.91551 0.89814 0.89860 0.88914 0.92096 0.91693 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.11 37.16 0.30 -0.54 16 2 C -0.11 -0.65 0.75 -152.94 -0.11 -0.77 16 3 C 0.13 0.97 4.31 -4.04 -0.02 0.95 16 4 N -0.70 -6.64 5.08 -60.73 -0.31 -6.95 16 5 C 0.51 6.37 7.89 -11.58 -0.09 6.28 16 6 O -0.52 -7.42 16.48 5.50 0.09 -7.33 16 7 C 0.50 7.31 7.86 -11.58 -0.09 7.22 16 8 O -0.52 -8.74 16.14 5.50 0.09 -8.65 16 9 N -0.69 -9.99 5.07 -54.19 -0.27 -10.26 16 10 C 0.15 2.51 2.42 -67.89 -0.16 2.34 16 11 C -0.15 -2.87 5.65 -26.61 -0.15 -3.02 16 12 C 0.17 4.13 5.31 -3.71 -0.02 4.11 16 13 N -0.59 -14.52 2.99 -172.32 -0.52 -15.04 16 14 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 15 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 16 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 17 N -0.90 -26.02 11.19 55.49 0.62 -25.40 16 18 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C 0.15 2.99 6.52 -3.71 -0.02 2.97 16 23 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16 24 C -0.14 -0.69 6.38 -25.17 -0.16 -0.85 16 25 C 0.04 0.25 7.64 37.93 0.29 0.54 16 26 O -0.37 -3.20 11.65 -35.23 -0.41 -3.61 16 27 C 0.05 0.36 6.27 37.93 0.24 0.59 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.40 6.88 -51.93 -0.36 0.04 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.56 8.12 -51.93 -0.42 0.14 16 33 H 0.41 3.62 6.53 -40.82 -0.27 3.35 16 34 H 0.41 5.29 8.07 -40.82 -0.33 4.96 16 35 H 0.09 1.59 7.57 -51.93 -0.39 1.20 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 2.43 6.04 -51.93 -0.31 2.12 16 40 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 42 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.08 0.36 7.73 -51.93 -0.40 -0.04 16 46 H 0.08 0.33 7.73 -51.93 -0.40 -0.08 16 47 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.06 0.46 7.85 -51.93 -0.41 0.05 16 50 H 0.10 0.65 7.87 -51.93 -0.41 0.24 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -31.78 396.74 -8.45 -40.24 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -8.31 Total: 4.18 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -0.38 Total: 10.35 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.48 Total: -57.65 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.23 Total: -19.59 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.78 -8.45 -40.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342075898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.874 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds