Wall clock time and date at job start Sat Apr 11 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 110.45291 * 2 1 4 4 N 1.46500 * 109.47197 * 59.29685 * 3 2 1 5 5 C 1.34771 * 119.99609 * 179.97438 * 4 3 2 6 6 O 1.21351 * 120.00749 * 359.97438 * 5 4 3 7 7 C 1.49457 * 119.99550 * 179.97438 * 5 4 3 8 8 O 1.21348 * 120.00212 * 0.02562 * 7 5 4 9 9 N 1.34780 * 119.99704 * 180.02562 * 7 5 4 10 10 C 1.46503 * 119.99823 * 180.27511 * 9 7 5 11 11 C 1.53039 * 109.45901 * 274.79145 * 10 9 7 12 12 C 1.53194 * 109.30894 * 178.61300 * 11 10 9 13 13 N 1.46927 * 108.77514 * 54.63932 * 12 11 10 14 14 C 1.36937 * 120.62967 * 126.37018 * 13 12 11 15 15 H 1.08001 * 119.99170 * 207.69494 * 14 13 12 16 16 C 1.38807 * 120.00421 * 27.69215 * 14 13 12 17 17 N 1.31617 * 119.99905 * 17.35620 * 16 14 13 18 18 Si 1.86798 * 120.00330 * 197.35198 * 16 14 13 19 19 H 1.48495 * 109.47054 * 89.99858 * 18 16 14 20 20 H 1.48498 * 109.47203 * 210.00462 * 18 16 14 21 21 H 1.48508 * 109.46835 * 330.00341 * 18 16 14 22 22 C 1.46924 * 118.73721 * 306.38628 * 13 12 11 23 23 C 1.53041 * 109.46053 * 154.72147 * 10 9 7 24 24 C 1.54504 * 110.51552 * 237.39386 * 2 1 3 25 25 C 1.54477 * 104.06383 * 241.21767 * 24 2 1 26 26 O 1.44429 * 104.80307 * 23.97850 * 25 24 2 27 27 C 1.44650 * 105.36698 * 319.56354 * 26 25 24 28 28 H 1.08998 * 109.46798 * 60.70341 * 1 2 3 29 29 H 1.09002 * 109.46441 * 180.70085 * 1 2 3 30 30 H 1.08994 * 109.47391 * 300.70187 * 1 2 3 31 31 H 1.08997 * 109.47124 * 299.29575 * 3 2 1 32 32 H 1.09001 * 109.46507 * 179.29495 * 3 2 1 33 33 H 0.97005 * 119.99679 * 359.97438 * 4 3 2 34 34 H 0.96994 * 120.00076 * 359.97438 * 9 7 5 35 35 H 1.09004 * 109.45647 * 34.75288 * 10 9 7 36 36 H 1.08992 * 109.49651 * 298.56709 * 11 10 9 37 37 H 1.09000 * 109.49303 * 58.66435 * 11 10 9 38 38 H 1.09004 * 109.59117 * 294.84879 * 12 11 10 39 39 H 1.09000 * 109.58486 * 174.42110 * 12 11 10 40 40 H 0.96994 * 120.00250 * 179.97438 * 17 16 14 41 41 H 1.09009 * 109.58792 * 293.82520 * 22 13 12 42 42 H 1.08997 * 109.58690 * 173.39955 * 22 13 12 43 43 H 1.08995 * 109.49873 * 301.33889 * 23 10 9 44 44 H 1.09000 * 109.49697 * 61.43500 * 23 10 9 45 45 H 1.09000 * 110.51072 * 359.86176 * 24 2 1 46 46 H 1.08998 * 110.51269 * 122.43328 * 24 2 1 47 47 H 1.08998 * 110.37518 * 142.81026 * 25 24 2 48 48 H 1.09005 * 110.37510 * 265.03615 * 25 24 2 49 49 H 1.08997 * 110.34326 * 281.59625 * 27 26 25 50 50 H 1.09000 * 110.50473 * 159.18380 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4336 0.0000 4 7 1.5746 2.1376 1.1876 5 6 1.9202 3.4229 1.3995 6 8 2.6378 3.9970 0.6070 7 6 1.4198 4.1413 2.6108 8 8 0.7026 3.5672 3.4036 9 7 1.7650 5.4268 2.8225 10 6 1.2793 6.1291 4.0129 11 6 -0.1101 6.7062 3.7330 12 6 -0.6292 7.4100 4.9908 13 7 0.3627 8.4057 5.4190 14 6 -0.0002 9.7110 5.6181 15 1 0.7270 10.4992 5.4899 16 6 -1.3026 10.0212 5.9847 17 7 -2.0905 9.0850 6.4695 18 14 -1.9372 11.7673 5.7899 19 1 -2.5419 11.9268 4.4431 20 1 -2.9627 12.0400 6.8287 21 1 -0.8110 12.7231 5.9432 22 6 1.7514 7.9744 5.6290 23 6 2.2438 7.2643 4.3641 24 6 2.0715 -0.7798 -1.2190 25 6 2.8788 -1.9393 -0.5944 26 8 2.3119 -2.1165 0.7221 27 6 2.0713 -0.7795 1.2190 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3632 -1.0276 0.0126 30 1 -0.3634 0.5247 0.8836 31 1 1.7205 1.9498 -0.8962 32 1 3.1545 1.4149 0.0126 33 1 1.0013 1.6786 1.8213 34 1 2.3386 5.8855 2.1890 35 1 1.2209 5.4309 4.8479 36 1 -0.0481 7.4231 2.9143 37 1 -0.7908 5.8997 3.4602 38 1 -0.7778 6.6776 5.7844 39 1 -1.5733 7.9071 4.7681 40 1 -3.0005 9.3017 6.7260 41 1 1.7969 7.2880 6.4746 42 1 2.3780 8.8439 5.8274 43 1 3.2385 6.8551 4.5405 44 1 2.2837 7.9760 3.5395 45 1 1.2492 -1.1674 -1.8204 46 1 2.7181 -0.1433 -1.8230 47 1 2.7576 -2.8473 -1.1851 48 1 3.9331 -1.6722 -0.5226 49 1 3.0010 -0.3335 1.5722 50 1 1.3301 -0.7967 2.0180 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342075898.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:49 Heat of formation + Delta-G solvation = -124.072799 kcal Electronic energy + Delta-G solvation = -29880.768161 eV Core-core repulsion = 25714.311269 eV Total energy + Delta-G solvation = -4166.456891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.91058 -40.89872 -39.88061 -38.84044 -36.90011 -36.06038 -34.08145 -33.77310 -31.83086 -31.29493 -30.70820 -28.46264 -27.43722 -26.86538 -25.12177 -23.93964 -23.70470 -23.00460 -21.46749 -21.15566 -20.55809 -19.49207 -18.67101 -18.05247 -17.24063 -17.17615 -16.98454 -16.82258 -16.55290 -16.18070 -15.97183 -15.65986 -15.36398 -15.34455 -15.10074 -14.80661 -14.65152 -14.38236 -14.14248 -14.08647 -13.95535 -13.37253 -13.21835 -13.05111 -12.89430 -12.84966 -12.61606 -12.60279 -12.36005 -12.14461 -12.04660 -12.01206 -11.85689 -11.80399 -11.68584 -11.58110 -11.40561 -10.72548 -10.70599 -10.59156 -10.36947 -10.17414 -8.71947 -7.87585 -5.32962 0.30952 1.26346 1.48068 1.49610 1.58185 2.10959 2.51751 2.57146 2.95255 3.27895 3.35198 3.48312 3.60461 3.66799 3.71523 3.82244 4.01858 4.02313 4.16933 4.28425 4.28777 4.45374 4.50114 4.59091 4.64720 4.65043 4.73129 4.74950 4.79197 4.81735 4.86511 4.94162 4.98902 5.00702 5.03521 5.08770 5.10928 5.17201 5.27612 5.30188 5.33751 5.45972 5.64339 5.69983 5.80349 5.88751 6.31324 6.38820 6.69136 6.92262 7.13776 7.84595 8.36410 9.19439 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.001926 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.463944 B =14537.801711 C =14770.003725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C 0.132 3.868 4 N -0.690 5.690 5 C 0.516 3.484 6 O -0.538 6.538 7 C 0.502 3.498 8 O -0.546 6.546 9 N -0.682 5.682 10 C 0.159 3.841 11 C -0.132 4.132 12 C 0.182 3.818 13 N -0.610 5.610 14 C -0.260 4.260 15 H 0.073 0.927 16 C -0.054 4.054 17 N -0.937 5.937 18 Si 0.968 3.032 19 H -0.287 1.287 20 H -0.297 1.297 21 H -0.266 1.266 22 C 0.142 3.858 23 C -0.125 4.125 24 C -0.138 4.138 25 C 0.037 3.963 26 O -0.397 6.397 27 C 0.047 3.953 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.417 0.583 34 H 0.418 0.582 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.052 0.948 38 H -0.004 1.004 39 H 0.057 0.943 40 H 0.249 0.751 41 H 0.017 0.983 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.104 0.896 48 H 0.067 0.933 49 H 0.064 0.936 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.999 -20.467 -17.284 28.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 C 0.010 3.990 4 N -0.343 5.343 5 C 0.296 3.704 6 O -0.415 6.415 7 C 0.282 3.718 8 O -0.424 6.424 9 N -0.334 5.334 10 C 0.055 3.945 11 C -0.173 4.173 12 C 0.055 3.945 13 N -0.333 5.333 14 C -0.390 4.390 15 H 0.090 0.910 16 C -0.249 4.249 17 N -0.583 5.583 18 Si 0.796 3.204 19 H -0.213 1.213 20 H -0.224 1.224 21 H -0.190 1.190 22 C 0.016 3.984 23 C -0.164 4.164 24 C -0.176 4.176 25 C -0.039 4.039 26 O -0.317 6.317 27 C -0.030 4.030 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.255 0.745 34 H 0.256 0.744 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.014 0.986 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.035 0.965 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.110 0.890 46 H 0.115 0.885 47 H 0.122 0.878 48 H 0.085 0.915 49 H 0.082 0.918 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.832 -20.645 -17.118 28.923 hybrid contribution -0.840 1.055 0.303 1.382 sum 9.991 -19.590 -16.815 27.683 Atomic orbital electron populations 1.21890 0.92335 1.02824 1.02699 1.22161 0.97671 0.93457 0.96848 1.21693 0.99584 0.90628 0.87131 1.45806 1.50861 1.10920 1.26723 1.19931 0.81293 0.83344 0.85863 1.90757 1.36976 1.67099 1.46662 1.20370 0.81478 0.83296 0.86637 1.90771 1.37196 1.67317 1.47092 1.45945 1.50276 1.11146 1.25988 1.20897 0.93835 0.93375 0.86347 1.22339 0.96324 0.98961 0.99630 1.20496 0.93132 0.89593 0.91264 1.44362 1.05039 1.06041 1.77907 1.19553 0.95873 0.84243 1.39344 0.90977 1.25831 0.98958 1.01071 0.99043 1.70190 1.07769 1.34341 1.45970 0.85259 0.77927 0.80375 0.76846 1.21346 1.22431 1.19047 1.21035 0.85664 0.97308 0.94343 1.22181 0.98226 0.96301 0.99734 1.23014 1.01204 0.96805 0.96586 1.23617 0.97293 0.99780 0.83217 1.89155 1.83439 1.26621 1.32446 1.23694 1.00550 0.82443 0.96283 0.91261 0.91420 0.92538 0.89935 0.90156 0.74513 0.74424 0.90942 0.92170 0.92895 0.98631 0.92498 0.94153 0.96487 0.91384 0.88918 0.90813 0.89036 0.88523 0.87801 0.91484 0.91811 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.11 71.98 0.58 -0.88 16 2 C -0.10 -1.03 0.75 -51.16 -0.04 -1.07 16 3 C 0.13 1.67 4.31 86.38 0.37 2.04 16 4 N -0.69 -11.85 5.08 -464.40 -2.36 -14.21 16 5 C 0.52 11.98 7.89 87.27 0.69 12.67 16 6 O -0.54 -14.13 16.48 -3.25 -0.05 -14.18 16 7 C 0.50 13.89 7.86 87.27 0.69 14.58 16 8 O -0.55 -17.90 16.14 -3.24 -0.05 -17.96 16 9 N -0.68 -18.45 5.07 -443.72 -2.25 -20.69 16 10 C 0.16 5.19 2.42 45.02 0.11 5.30 16 11 C -0.13 -5.13 5.65 30.67 0.17 -4.96 16 12 C 0.18 8.91 5.31 86.36 0.46 9.37 16 13 N -0.61 -30.09 2.99 -699.09 -2.09 -32.19 16 14 C -0.26 -14.05 9.58 84.03 0.81 -13.25 16 15 H 0.07 3.74 7.89 -2.91 -0.02 3.72 16 16 C -0.05 -3.00 4.91 84.86 0.42 -2.58 16 17 N -0.94 -55.80 11.19 21.65 0.24 -55.56 16 18 Si 0.97 44.70 29.59 68.60 2.03 46.73 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 C 0.14 5.57 6.52 86.36 0.56 6.13 16 23 C -0.12 -3.78 5.55 30.67 0.17 -3.61 16 24 C -0.14 -1.02 6.38 31.61 0.20 -0.81 16 25 C 0.04 0.36 7.64 72.48 0.55 0.91 16 26 O -0.40 -6.41 11.65 -148.98 -1.74 -8.15 16 27 C 0.05 0.61 6.27 72.49 0.45 1.07 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.65 6.88 -2.39 -0.02 0.64 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16 33 H 0.42 6.76 6.53 -92.70 -0.61 6.16 16 34 H 0.42 9.76 8.07 -92.71 -0.75 9.01 16 35 H 0.07 2.62 7.57 -2.38 -0.02 2.60 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.06 3.17 6.04 -2.39 -0.01 3.15 16 40 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.07 2.54 7.93 -2.39 -0.02 2.52 16 43 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.09 0.56 7.73 -2.39 -0.02 0.54 16 46 H 0.10 0.48 7.73 -2.39 -0.02 0.46 16 47 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 49 H 0.06 0.82 7.85 -2.39 -0.02 0.81 16 50 H 0.10 1.21 7.87 -2.39 -0.02 1.20 16 Total: -1.00 -69.17 396.74 -0.48 -69.64 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.40 Total: 21.64 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: 6.20 Total: 24.92 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -6.46 Total: -122.65 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -1.84 Total: -40.28 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -69.17 -0.48 -69.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342075898.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.431 kcal (2) G-P(sol) polarization free energy of solvation -69.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds