Wall clock time and date at job start Sat Apr 11 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 110.49099 * 2 1 4 4 C 1.54574 * 110.44311 * 122.48715 * 2 1 3 5 5 C 1.54492 * 102.33084 * 91.78473 * 4 2 1 6 6 C 1.53005 * 110.36628 * 134.28703 * 5 4 2 7 7 N 1.46504 * 110.37225 * 256.61269 * 5 4 2 8 8 C 1.34768 * 119.99950 * 180.02562 * 7 5 4 9 9 O 1.21583 * 120.00388 * 0.02562 * 8 7 5 10 10 N 1.34783 * 119.99805 * 180.02562 * 8 7 5 11 11 C 1.46498 * 120.00157 * 180.02562 * 10 8 7 12 12 C 1.53046 * 109.45997 * 275.07107 * 11 10 8 13 13 C 1.53188 * 109.31203 * 178.61375 * 12 11 10 14 14 N 1.46928 * 108.77821 * 54.63186 * 13 12 11 15 15 C 1.36939 * 120.63291 * 126.36848 * 14 13 12 16 16 H 1.08002 * 119.99921 * 207.98765 * 15 14 13 17 17 C 1.38805 * 119.99654 * 27.98056 * 15 14 13 18 18 N 1.31618 * 120.00173 * 17.50728 * 17 15 14 19 19 Si 1.86801 * 119.99869 * 197.50078 * 17 15 14 20 20 H 1.48498 * 109.47051 * 94.07519 * 19 17 15 21 21 H 1.48501 * 109.47244 * 214.07219 * 19 17 15 22 22 H 1.48502 * 109.47175 * 334.07435 * 19 17 15 23 23 C 1.46928 * 118.73718 * 306.39224 * 14 13 12 24 24 C 1.53039 * 109.46106 * 154.99701 * 11 10 8 25 25 C 1.51871 * 104.56352 * 15.43278 * 5 4 2 26 26 O 1.20822 * 125.03906 * 182.23143 * 25 5 4 27 27 O 1.34062 * 109.86796 * 2.23867 * 25 5 4 28 28 H 1.09004 * 109.47273 * 297.51367 * 1 2 3 29 29 H 1.09002 * 109.47637 * 57.50861 * 1 2 3 30 30 H 1.08998 * 109.47605 * 177.51494 * 1 2 3 31 31 H 1.08997 * 109.46943 * 182.49337 * 3 2 1 32 32 H 1.08997 * 109.46503 * 302.48827 * 3 2 1 33 33 H 1.08997 * 109.47171 * 62.48644 * 3 2 1 34 34 H 1.08994 * 110.86885 * 210.05417 * 4 2 1 35 35 H 1.09004 * 110.86350 * 333.52414 * 4 2 1 36 36 H 1.09000 * 109.47105 * 60.00273 * 6 5 4 37 37 H 1.09000 * 109.47056 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.46948 * 300.00311 * 6 5 4 39 39 H 0.97005 * 119.99511 * 0.02562 * 7 5 4 40 40 H 0.96994 * 119.99961 * 359.97438 * 10 8 7 41 41 H 1.09005 * 109.46044 * 35.02417 * 11 10 8 42 42 H 1.09006 * 109.49153 * 298.56287 * 12 11 10 43 43 H 1.08994 * 109.49904 * 58.66119 * 12 11 10 44 44 H 1.09000 * 109.58865 * 294.84522 * 13 12 11 45 45 H 1.08997 * 109.58746 * 174.42124 * 13 12 11 46 46 H 0.97003 * 119.99987 * 179.97438 * 18 17 15 47 47 H 1.09003 * 109.58642 * 293.81837 * 23 14 13 48 48 H 1.09001 * 109.58723 * 173.39048 * 23 14 13 49 49 H 1.08997 * 109.50247 * 301.33854 * 24 11 10 50 50 H 1.09005 * 109.49527 * 61.40383 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0655 1.4333 0.0000 4 6 2.0698 -0.7779 1.2217 5 6 2.2291 -2.2077 0.6584 6 6 3.5812 -2.7943 1.0692 7 7 1.1369 -3.0647 1.1261 8 6 1.0863 -4.3577 0.7493 9 8 1.9473 -4.8130 0.0216 10 7 0.0811 -5.1460 1.1793 11 6 0.0264 -6.5517 0.7702 12 6 -0.6647 -6.6600 -0.5911 13 6 -0.6892 -8.1270 -1.0315 14 7 -1.3155 -8.9287 0.0287 15 6 -2.3731 -9.7521 -0.2517 16 1 -3.0998 -9.9776 0.5147 17 6 -2.5111 -10.2967 -1.5210 18 7 -1.4837 -10.3179 -2.3433 19 14 -4.1551 -10.9996 -2.0620 20 1 -4.9232 -9.9581 -2.7902 21 1 -3.9259 -12.1622 -2.9571 22 1 -4.9230 -11.4375 -0.8687 23 6 -0.7857 -8.8296 1.3955 24 6 -0.7600 -7.3547 1.8088 25 6 2.1602 -2.0341 -0.8488 26 8 2.2074 -2.9341 -1.6536 27 8 2.0393 -0.7340 -1.1527 28 1 -0.3634 0.4748 0.9115 29 1 -0.3634 0.5520 -0.8668 30 1 -0.3634 -1.0266 -0.0446 31 1 3.1544 1.4142 -0.0447 32 1 1.6756 1.9667 -0.8668 33 1 1.7481 1.9398 0.9114 34 1 3.0314 -0.3777 1.5429 35 1 1.3511 -0.7613 2.0411 36 1 3.6457 -2.8317 2.1566 37 1 3.6780 -3.8019 0.6650 38 1 4.3829 -2.1672 0.6790 39 1 0.4501 -2.7015 1.7071 40 1 -0.6055 -4.7829 1.7601 41 1 1.0391 -6.9479 0.6955 42 1 -1.6858 -6.2869 -0.5113 43 1 -0.1171 -6.0689 -1.3251 44 1 0.3299 -8.4753 -1.1992 45 1 -1.2663 -8.2228 -1.9512 46 1 -1.5800 -10.6989 -3.2302 47 1 0.2257 -9.2352 1.4257 48 1 -1.4264 -9.3890 2.0772 49 1 -0.2804 -7.2581 2.7828 50 1 -1.7801 -6.9747 1.8663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346282126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:59 Heat of formation + Delta-G solvation = -84.769678 kcal Electronic energy + Delta-G solvation = -31281.525397 eV Core-core repulsion = 27116.772817 eV Total energy + Delta-G solvation = -4164.752580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.82405 -39.72526 -37.82798 -37.47368 -35.58847 -34.27622 -33.72309 -32.35435 -31.15013 -29.88519 -29.12425 -28.06199 -27.41688 -25.00483 -24.16635 -22.43001 -22.14996 -21.80282 -20.93762 -19.76833 -19.22322 -18.16703 -17.37794 -16.81066 -16.66792 -16.19811 -15.65196 -15.13126 -14.92010 -14.73154 -14.44748 -14.25171 -13.84484 -13.76645 -13.72988 -13.43728 -13.14286 -12.94468 -12.88371 -12.82079 -12.51600 -12.46373 -12.32944 -12.25950 -12.21956 -11.95010 -11.44178 -11.39773 -11.07479 -10.88542 -10.81411 -10.70777 -10.42995 -10.32649 -10.16626 -10.02670 -9.78421 -9.69776 -9.46713 -9.11346 -8.58863 -8.34827 -6.63931 -5.73581 -3.16683 1.86448 2.78418 2.91210 3.29773 3.41045 3.47530 3.49328 3.67024 3.72260 4.01018 4.16632 4.30010 4.39976 4.53307 4.71635 4.95632 5.00736 5.13673 5.20445 5.21500 5.26414 5.32851 5.37287 5.44961 5.49747 5.50879 5.56047 5.65105 5.71174 5.88775 6.07982 6.14734 6.24481 6.28664 6.40964 6.52651 6.60480 6.64606 6.70389 6.81223 6.95939 6.99338 7.10930 7.45934 7.50486 7.75381 7.84401 8.12688 8.49900 8.80624 9.25647 9.89227 10.46104 11.34829 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.002527 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.198461 B =11078.916702 C =11414.679480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.104 3.896 3 C -0.143 4.143 4 C -0.150 4.150 5 C 0.145 3.855 6 C -0.157 4.157 7 N -0.738 5.738 8 C 0.696 3.304 9 O -0.555 6.555 10 N -0.738 5.738 11 C 0.170 3.830 12 C -0.147 4.147 13 C 0.174 3.826 14 N -0.593 5.593 15 C -0.255 4.255 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.900 5.900 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.149 3.851 24 C -0.138 4.138 25 C 0.465 3.535 26 O -0.402 6.402 27 O -0.342 6.342 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.396 0.604 40 H 0.388 0.612 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.021 0.979 45 H 0.088 0.912 46 H 0.254 0.746 47 H 0.020 0.980 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.180 26.062 12.702 29.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 C -0.200 4.200 4 C -0.188 4.188 5 C 0.055 3.945 6 C -0.215 4.215 7 N -0.399 5.399 8 C 0.395 3.605 9 O -0.429 6.429 10 N -0.392 5.392 11 C 0.067 3.933 12 C -0.187 4.187 13 C 0.048 3.952 14 N -0.316 5.316 15 C -0.384 4.384 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.544 5.544 19 Si 0.732 3.268 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.022 3.978 24 C -0.178 4.178 25 C 0.299 3.701 26 O -0.279 6.279 27 O -0.260 6.260 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.231 0.769 40 H 0.221 0.779 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.039 0.961 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.038 0.962 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.074 25.144 11.216 28.426 hybrid contribution -1.580 0.061 0.287 1.607 sum 5.493 25.205 11.503 28.245 Atomic orbital electron populations 1.22282 0.92693 1.03665 1.03855 1.23038 0.94687 0.93070 0.82545 1.21873 1.02309 0.92255 1.03539 1.23404 1.04544 0.92658 0.98224 1.21369 0.90498 0.90609 0.92043 1.22146 0.92570 1.04626 1.02169 1.45098 1.29229 1.09604 1.55923 1.16054 0.83095 0.80489 0.80814 1.90996 1.39750 1.73163 1.39005 1.45522 1.27437 1.12093 1.54160 1.20909 1.00398 0.77173 0.94862 1.22571 0.99142 1.01350 0.95661 1.20749 0.96785 0.84657 0.92995 1.44121 1.36619 1.47991 1.02819 1.19178 0.99972 1.22233 0.97053 0.91652 1.25064 0.97215 0.98657 0.98718 1.70049 1.27994 1.48022 1.08295 0.86286 0.83873 0.78269 0.78386 1.21522 1.21784 1.20421 1.20834 0.97032 0.91518 0.88457 1.22342 0.99537 0.99130 0.96752 1.23481 0.73918 0.81498 0.91221 1.90844 1.40710 1.39976 1.56383 1.87132 1.77478 1.21167 1.40237 0.90026 0.90752 0.91636 0.91081 0.90974 0.89983 0.87552 0.87910 0.91148 0.88420 0.91515 0.76855 0.77939 0.90023 0.92971 0.92656 0.96090 0.89402 0.93580 0.96184 0.92386 0.92728 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 8.79 37.15 0.33 -0.66 16 2 C 0.10 0.70 1.24 -89.79 -0.11 0.59 16 3 C -0.14 -0.61 8.91 37.16 0.33 -0.27 16 4 C -0.15 -0.81 5.51 -25.12 -0.14 -0.95 16 5 C 0.14 1.48 0.96 -131.60 -0.13 1.35 16 6 C -0.16 -1.64 8.38 37.16 0.31 -1.33 16 7 N -0.74 -7.71 5.15 -52.22 -0.27 -7.98 16 8 C 0.70 10.66 7.95 -86.92 -0.69 9.97 16 9 O -0.55 -11.15 11.95 -16.15 -0.19 -11.35 16 10 N -0.74 -10.51 5.08 -58.63 -0.30 -10.81 16 11 C 0.17 3.06 2.41 -67.89 -0.16 2.90 16 12 C -0.15 -3.11 5.65 -26.61 -0.15 -3.26 16 13 C 0.17 4.43 5.31 -3.71 -0.02 4.41 16 14 N -0.59 -15.14 2.99 -172.32 -0.52 -15.65 16 15 C -0.25 -7.08 9.58 -15.06 -0.14 -7.22 16 16 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 17 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 18 N -0.90 -26.98 11.22 55.49 0.62 -26.36 16 19 Si 0.90 22.07 29.59 -169.99 -5.03 17.04 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 24 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 25 C 0.46 6.72 7.14 36.58 0.26 6.98 16 26 O -0.40 -7.99 15.84 -25.77 -0.41 -8.40 16 27 O -0.34 -4.10 10.48 -38.47 -0.40 -4.50 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.50 8.03 -51.93 -0.42 0.08 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.11 0.39 7.60 -51.93 -0.39 0.00 16 35 H 0.10 0.29 7.42 -51.93 -0.39 -0.09 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 1.43 6.02 -51.93 -0.31 1.12 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.40 2.65 8.22 -40.82 -0.34 2.32 16 40 H 0.39 4.18 8.62 -40.82 -0.35 3.83 16 41 H 0.08 1.67 7.58 -51.93 -0.39 1.27 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 2.49 6.06 -51.93 -0.31 2.18 16 46 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 391.97 15.07 5.91 5.91 Total: -1.00 -36.99 391.97 -9.52 -46.52 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.36 Total: 2.46 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -0.57 Total: 13.12 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: -0.46 Total: -60.80 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -1.00 Total: -24.25 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.99 -9.52 -46.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346282126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.253 kcal (2) G-P(sol) polarization free energy of solvation -36.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds