Wall clock time and date at job start Sat Apr 11 2020 05:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 110.49099 * 2 1 4 4 C 1.54574 * 110.44311 * 122.48715 * 2 1 3 5 5 C 1.54492 * 102.33084 * 91.78473 * 4 2 1 6 6 C 1.53005 * 110.36628 * 134.28703 * 5 4 2 7 7 N 1.46504 * 110.37225 * 256.61269 * 5 4 2 8 8 C 1.34768 * 119.99950 * 180.02562 * 7 5 4 9 9 O 1.21583 * 120.00388 * 0.02562 * 8 7 5 10 10 N 1.34783 * 119.99805 * 180.02562 * 8 7 5 11 11 C 1.46498 * 120.00157 * 180.02562 * 10 8 7 12 12 C 1.53046 * 109.45997 * 275.07107 * 11 10 8 13 13 C 1.53188 * 109.31203 * 178.61375 * 12 11 10 14 14 N 1.46928 * 108.77821 * 54.63186 * 13 12 11 15 15 C 1.36939 * 120.63291 * 126.36848 * 14 13 12 16 16 H 1.08002 * 119.99921 * 207.98765 * 15 14 13 17 17 C 1.38805 * 119.99654 * 27.98056 * 15 14 13 18 18 N 1.31618 * 120.00173 * 17.50728 * 17 15 14 19 19 Si 1.86801 * 119.99869 * 197.50078 * 17 15 14 20 20 H 1.48498 * 109.47051 * 94.07519 * 19 17 15 21 21 H 1.48501 * 109.47244 * 214.07219 * 19 17 15 22 22 H 1.48502 * 109.47175 * 334.07435 * 19 17 15 23 23 C 1.46928 * 118.73718 * 306.39224 * 14 13 12 24 24 C 1.53039 * 109.46106 * 154.99701 * 11 10 8 25 25 C 1.51871 * 104.56352 * 15.43278 * 5 4 2 26 26 O 1.20822 * 125.03906 * 182.23143 * 25 5 4 27 27 O 1.34062 * 109.86796 * 2.23867 * 25 5 4 28 28 H 1.09004 * 109.47273 * 297.51367 * 1 2 3 29 29 H 1.09002 * 109.47637 * 57.50861 * 1 2 3 30 30 H 1.08998 * 109.47605 * 177.51494 * 1 2 3 31 31 H 1.08997 * 109.46943 * 182.49337 * 3 2 1 32 32 H 1.08997 * 109.46503 * 302.48827 * 3 2 1 33 33 H 1.08997 * 109.47171 * 62.48644 * 3 2 1 34 34 H 1.08994 * 110.86885 * 210.05417 * 4 2 1 35 35 H 1.09004 * 110.86350 * 333.52414 * 4 2 1 36 36 H 1.09000 * 109.47105 * 60.00273 * 6 5 4 37 37 H 1.09000 * 109.47056 * 179.97438 * 6 5 4 38 38 H 1.09004 * 109.46948 * 300.00311 * 6 5 4 39 39 H 0.97005 * 119.99511 * 0.02562 * 7 5 4 40 40 H 0.96994 * 119.99961 * 359.97438 * 10 8 7 41 41 H 1.09005 * 109.46044 * 35.02417 * 11 10 8 42 42 H 1.09006 * 109.49153 * 298.56287 * 12 11 10 43 43 H 1.08994 * 109.49904 * 58.66119 * 12 11 10 44 44 H 1.09000 * 109.58865 * 294.84522 * 13 12 11 45 45 H 1.08997 * 109.58746 * 174.42124 * 13 12 11 46 46 H 0.97003 * 119.99987 * 179.97438 * 18 17 15 47 47 H 1.09003 * 109.58642 * 293.81837 * 23 14 13 48 48 H 1.09001 * 109.58723 * 173.39048 * 23 14 13 49 49 H 1.08997 * 109.50247 * 301.33854 * 24 11 10 50 50 H 1.09005 * 109.49527 * 61.40383 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0655 1.4333 0.0000 4 6 2.0698 -0.7779 1.2217 5 6 2.2291 -2.2077 0.6584 6 6 3.5812 -2.7943 1.0692 7 7 1.1369 -3.0647 1.1261 8 6 1.0863 -4.3577 0.7493 9 8 1.9473 -4.8130 0.0216 10 7 0.0811 -5.1460 1.1793 11 6 0.0264 -6.5517 0.7702 12 6 -0.6647 -6.6600 -0.5911 13 6 -0.6892 -8.1270 -1.0315 14 7 -1.3155 -8.9287 0.0287 15 6 -2.3731 -9.7521 -0.2517 16 1 -3.0998 -9.9776 0.5147 17 6 -2.5111 -10.2967 -1.5210 18 7 -1.4837 -10.3179 -2.3433 19 14 -4.1551 -10.9996 -2.0620 20 1 -4.9232 -9.9581 -2.7902 21 1 -3.9259 -12.1622 -2.9571 22 1 -4.9230 -11.4375 -0.8687 23 6 -0.7857 -8.8296 1.3955 24 6 -0.7600 -7.3547 1.8088 25 6 2.1602 -2.0341 -0.8488 26 8 2.2074 -2.9341 -1.6536 27 8 2.0393 -0.7340 -1.1527 28 1 -0.3634 0.4748 0.9115 29 1 -0.3634 0.5520 -0.8668 30 1 -0.3634 -1.0266 -0.0446 31 1 3.1544 1.4142 -0.0447 32 1 1.6756 1.9667 -0.8668 33 1 1.7481 1.9398 0.9114 34 1 3.0314 -0.3777 1.5429 35 1 1.3511 -0.7613 2.0411 36 1 3.6457 -2.8317 2.1566 37 1 3.6780 -3.8019 0.6650 38 1 4.3829 -2.1672 0.6790 39 1 0.4501 -2.7015 1.7071 40 1 -0.6055 -4.7829 1.7601 41 1 1.0391 -6.9479 0.6955 42 1 -1.6858 -6.2869 -0.5113 43 1 -0.1171 -6.0689 -1.3251 44 1 0.3299 -8.4753 -1.1992 45 1 -1.2663 -8.2228 -1.9512 46 1 -1.5800 -10.6989 -3.2302 47 1 0.2257 -9.2352 1.4257 48 1 -1.4264 -9.3890 2.0772 49 1 -0.2804 -7.2581 2.7828 50 1 -1.7801 -6.9747 1.8663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346282126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:58 Heat of formation + Delta-G solvation = -111.687876 kcal Electronic energy + Delta-G solvation = -31282.692658 eV Core-core repulsion = 27116.772817 eV Total energy + Delta-G solvation = -4165.919841 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.69817 -40.94532 -39.15113 -38.86022 -36.69944 -35.84574 -34.43350 -33.98705 -32.46282 -31.64188 -30.72073 -28.46610 -28.01347 -26.90193 -25.07309 -24.02764 -23.88523 -22.54487 -22.24591 -21.18765 -20.41352 -19.36838 -18.73931 -18.18188 -17.83296 -17.13822 -16.99129 -16.58688 -16.15631 -15.84557 -15.68743 -15.37437 -15.25768 -15.22312 -14.78969 -14.69679 -14.38811 -14.33307 -14.04052 -13.74982 -13.51552 -13.34862 -13.19484 -13.06666 -13.03417 -13.01809 -12.71483 -12.63725 -12.60686 -12.52270 -12.12967 -12.09224 -12.02925 -11.86748 -11.54531 -11.50341 -11.46148 -11.34114 -10.93555 -10.59701 -10.23943 -9.80956 -8.73567 -7.88191 -5.34949 0.83717 1.46018 1.47823 1.57427 1.71212 2.07243 2.21667 2.50680 2.83815 3.09947 3.22642 3.30061 3.50048 3.65612 3.73122 3.87961 3.91680 4.06069 4.10058 4.34389 4.46398 4.53011 4.58675 4.65295 4.65526 4.69363 4.76645 4.79492 4.80736 4.86214 4.91172 4.93570 5.04295 5.08516 5.12736 5.18224 5.22647 5.30893 5.31901 5.35909 5.44606 5.61339 5.64233 5.67061 5.80820 6.00316 6.37138 6.46593 7.11082 7.13024 7.66705 7.82933 8.36350 9.19083 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021156 B = 0.002527 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.198461 B =11078.916702 C =11414.679480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.091 3.909 3 C -0.140 4.140 4 C -0.133 4.133 5 C 0.145 3.855 6 C -0.155 4.155 7 N -0.714 5.714 8 C 0.690 3.310 9 O -0.606 6.606 10 N -0.723 5.723 11 C 0.184 3.816 12 C -0.129 4.129 13 C 0.185 3.815 14 N -0.609 5.609 15 C -0.260 4.260 16 H 0.077 0.923 17 C -0.058 4.058 18 N -0.941 5.941 19 Si 0.971 3.029 20 H -0.288 1.288 21 H -0.298 1.298 22 H -0.260 1.260 23 C 0.140 3.860 24 C -0.117 4.117 25 C 0.458 3.542 26 O -0.478 6.478 27 O -0.364 6.364 28 H 0.122 0.878 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.100 0.900 37 H 0.049 0.951 38 H 0.079 0.921 39 H 0.420 0.580 40 H 0.411 0.589 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.032 0.968 44 H -0.015 1.015 45 H 0.051 0.949 46 H 0.248 0.752 47 H 0.011 0.989 48 H 0.071 0.929 49 H 0.095 0.905 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 29.303 17.135 34.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.055 3.945 3 C -0.197 4.197 4 C -0.170 4.170 5 C 0.055 3.945 6 C -0.213 4.213 7 N -0.376 5.376 8 C 0.390 3.610 9 O -0.483 6.483 10 N -0.379 5.379 11 C 0.078 3.922 12 C -0.170 4.170 13 C 0.059 3.941 14 N -0.332 5.332 15 C -0.390 4.390 16 H 0.095 0.905 17 C -0.253 4.253 18 N -0.587 5.587 19 Si 0.799 3.201 20 H -0.215 1.215 21 H -0.225 1.225 22 H -0.184 1.184 23 C 0.015 3.985 24 C -0.157 4.157 25 C 0.296 3.704 26 O -0.360 6.360 27 O -0.282 6.282 28 H 0.140 0.860 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.119 0.881 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.259 0.741 40 H 0.248 0.752 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.003 0.997 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.029 0.971 48 H 0.090 0.910 49 H 0.114 0.886 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.489 28.491 15.760 33.019 hybrid contribution -1.035 -0.842 -1.095 1.725 sum 4.454 27.649 14.665 31.613 Atomic orbital electron populations 1.22360 0.92003 1.02664 1.05552 1.23602 0.95389 0.94041 0.81422 1.21948 1.02319 0.90384 1.05034 1.23551 1.07249 0.87954 0.98223 1.21539 0.90214 0.93407 0.89341 1.22118 0.93280 1.02108 1.03805 1.44816 1.29872 1.07719 1.55215 1.16318 0.82533 0.81894 0.80301 1.91001 1.41684 1.74535 1.41098 1.45050 1.28027 1.10517 1.54295 1.20458 0.98569 0.79618 0.93537 1.22299 0.99615 0.97677 0.97380 1.20403 0.94000 0.87407 0.92336 1.44360 1.36576 1.47869 1.04434 1.19612 1.00619 1.21434 0.97301 0.90489 1.25931 1.00493 0.99837 0.99050 1.70235 1.30272 1.49795 1.08399 0.85197 0.79721 0.77041 0.78173 1.21529 1.22500 1.18410 1.21076 0.96466 0.94812 0.86191 1.22121 1.00537 0.95376 0.97655 1.24322 0.71783 0.81505 0.92794 1.90799 1.44105 1.42438 1.58659 1.87103 1.77066 1.20444 1.43546 0.85996 0.91712 0.93664 0.91008 0.91755 0.86401 0.84766 0.83867 0.88100 0.93228 0.90184 0.74087 0.75226 0.92879 0.92165 0.94951 0.99665 0.93062 0.94272 0.97137 0.91025 0.88626 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 8.79 71.98 0.63 -0.83 16 2 C 0.09 0.96 1.24 -10.26 -0.01 0.94 16 3 C -0.14 -0.66 8.91 71.98 0.64 -0.02 16 4 C -0.13 -0.80 5.51 31.64 0.17 -0.62 16 5 C 0.14 2.70 0.96 3.74 0.00 2.70 16 6 C -0.16 -3.07 8.38 71.98 0.60 -2.47 16 7 N -0.71 -13.36 5.15 -437.38 -2.25 -15.61 16 8 C 0.69 20.90 7.95 179.06 1.42 22.32 16 9 O -0.61 -25.69 11.95 16.53 0.20 -25.50 16 10 N -0.72 -19.39 5.08 -457.68 -2.33 -21.72 16 11 C 0.18 6.57 2.41 45.02 0.11 6.67 16 12 C -0.13 -5.69 5.65 30.67 0.17 -5.51 16 13 C 0.19 9.99 5.31 86.36 0.46 10.45 16 14 N -0.61 -31.67 2.99 -699.09 -2.09 -33.76 16 15 C -0.26 -14.51 9.58 84.03 0.81 -13.70 16 16 H 0.08 4.06 7.89 -2.91 -0.02 4.04 16 17 C -0.06 -3.38 4.90 84.86 0.42 -2.96 16 18 N -0.94 -59.17 11.22 21.65 0.24 -58.93 16 19 Si 0.97 46.15 29.59 68.60 2.03 48.18 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 21 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 C 0.14 5.74 6.52 86.36 0.56 6.30 16 24 C -0.12 -3.62 5.55 30.67 0.17 -3.45 16 25 C 0.46 13.68 7.14 71.61 0.51 14.19 16 26 O -0.48 -20.65 15.84 28.69 0.45 -20.19 16 27 O -0.36 -8.69 10.48 -50.14 -0.53 -9.21 16 28 H 0.12 0.07 8.14 -2.38 -0.02 0.05 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.04 0.59 8.03 -2.39 -0.02 0.57 16 31 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.13 0.19 7.60 -2.39 -0.02 0.17 16 35 H 0.14 -0.22 7.42 -2.39 -0.02 -0.23 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.05 1.52 6.02 -2.39 -0.01 1.50 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.42 3.81 8.22 -92.70 -0.76 3.05 16 40 H 0.41 7.31 8.62 -92.71 -0.80 6.52 16 41 H 0.05 2.24 7.58 -2.38 -0.02 2.22 16 42 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 43 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 44 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 45 H 0.05 3.11 6.06 -2.39 -0.01 3.10 16 46 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 47 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 48 H 0.07 2.72 7.93 -2.39 -0.02 2.70 16 49 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 50 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -91.93 391.97 1.79 -90.14 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -0.61 Total: 12.59 kcal Atomic # 6 Polarization: 27.34 SS G_CDS: 6.67 Total: 34.01 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -6.43 Total: -130.02 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: 0.13 Total: -54.90 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -91.93 1.79 -90.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346282126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.550 kcal (2) G-P(sol) polarization free energy of solvation -91.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds