Wall clock time and date at job start Sat Apr 11 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47240 * 2 1 4 4 C 1.52998 * 109.47497 * 120.00165 * 2 1 3 5 5 C 1.52999 * 109.47260 * 65.84814 * 4 2 1 6 6 N 1.46493 * 109.47282 * 182.20853 * 5 4 2 7 7 C 1.46503 * 120.00190 * 274.84685 * 6 5 4 8 8 C 1.50696 * 109.47261 * 269.99938 * 7 6 5 9 9 H 1.08010 * 119.99990 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00330 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99774 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00212 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47251 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46686 * 120.00547 * 12 10 8 15 15 H 1.48498 * 109.47387 * 240.00223 * 12 10 8 16 16 C 1.34780 * 120.00067 * 94.84819 * 6 5 4 17 17 O 1.21657 * 119.99888 * 185.35874 * 16 6 5 18 18 C 1.46733 * 119.99683 * 5.36166 * 16 6 5 19 19 N 1.29695 * 119.54437 * 274.29806 * 18 16 6 20 20 N 1.39861 * 121.13770 * 180.39163 * 19 18 16 21 21 C 1.46498 * 119.79639 * 199.19670 * 20 19 18 22 22 C 1.52997 * 109.46904 * 266.99896 * 21 20 19 23 23 O 1.42897 * 109.47608 * 64.40990 * 22 21 20 24 24 C 1.34744 * 120.40934 * 19.16389 * 20 19 18 25 25 O 1.21247 * 120.12492 * 179.75242 * 24 20 19 26 26 C 1.50769 * 119.75215 * 359.73588 * 24 20 19 27 27 C 1.50541 * 119.54784 * 94.57540 * 18 16 6 28 28 H 1.08998 * 109.47153 * 183.79557 * 1 2 3 29 29 H 1.09002 * 109.46939 * 303.79267 * 1 2 3 30 30 H 1.08996 * 109.47604 * 63.79286 * 1 2 3 31 31 H 1.09002 * 109.47100 * 240.00512 * 2 1 3 32 32 H 1.08997 * 109.47562 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47113 * 300.00529 * 3 2 1 34 34 H 1.09000 * 109.46801 * 59.99714 * 3 2 1 35 35 H 1.09004 * 109.46943 * 305.85211 * 4 2 1 36 36 H 1.08997 * 109.47285 * 185.84922 * 4 2 1 37 37 H 1.09007 * 109.46784 * 62.20690 * 5 4 2 38 38 H 1.09004 * 109.47328 * 302.21458 * 5 4 2 39 39 H 1.09002 * 109.46774 * 30.00156 * 7 6 5 40 40 H 1.09005 * 109.47010 * 150.00004 * 7 6 5 41 41 H 0.97005 * 120.00219 * 179.97438 * 11 10 8 42 42 H 1.09007 * 109.47164 * 26.99684 * 21 20 19 43 43 H 1.08995 * 109.47360 * 146.99376 * 21 20 19 44 44 H 1.09001 * 109.47193 * 184.41244 * 22 21 20 45 45 H 1.09001 * 109.47147 * 304.40580 * 22 21 20 46 46 H 0.96701 * 114.00313 * 175.00918 * 23 22 21 47 47 H 1.09001 * 109.51925 * 206.81285 * 26 24 20 48 48 H 1.09002 * 109.51480 * 86.65942 * 26 24 20 49 49 H 1.08999 * 109.44481 * 265.58253 * 27 18 16 50 50 H 1.08994 * 109.45228 * 25.50742 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6537 -2.1999 1.1779 6 7 2.0958 -2.8796 2.3979 7 6 3.4654 -3.3903 2.4966 8 6 3.5099 -4.8094 1.9916 9 1 2.6083 -5.2834 1.6325 10 6 4.7019 -5.5025 1.9868 11 7 5.7998 -4.9252 2.4236 12 14 4.7569 -7.2618 1.3614 13 1 3.3979 -7.6766 0.9300 14 1 5.6897 -7.3484 0.2091 15 1 5.2273 -8.1588 2.4474 16 6 1.2426 -3.0351 3.4297 17 8 1.6360 -3.5112 4.4778 18 6 -0.1606 -2.6302 3.2886 19 7 -0.4971 -1.3988 3.5180 20 7 -1.8259 -0.9784 3.4015 21 6 -2.1277 0.4468 3.2469 22 6 -2.3884 1.0649 4.6219 23 8 -1.1957 1.0019 5.4065 24 6 -2.8303 -1.8762 3.4299 25 8 -3.9806 -1.5057 3.3330 26 6 -2.5182 -3.3434 3.5823 27 6 -1.1910 -3.6511 2.8857 28 1 -0.3633 -1.0254 0.0680 29 1 -0.3633 0.5716 0.8541 30 1 -0.3634 0.4538 -0.9220 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.5937 -0.2715 2.1361 36 1 3.1250 -0.6314 1.3030 37 1 2.1318 -2.6590 0.3125 38 1 0.5713 -2.2886 1.0844 39 1 4.1289 -2.7694 1.8948 40 1 3.7886 -3.3648 3.5374 41 1 6.6384 -5.4129 2.4206 42 1 -1.2815 0.9486 2.7775 43 1 -3.0126 0.5651 2.6216 44 1 -2.6893 2.1056 4.5014 45 1 -3.1830 0.5128 5.1238 46 1 -1.2649 1.4441 6.2637 47 1 -3.3135 -3.9340 3.1277 48 1 -2.4397 -3.5909 4.6410 49 1 -1.3319 -3.6176 1.8054 50 1 -0.8504 -4.6448 3.1764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362100453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:02 Heat of formation + Delta-G solvation = -89.705191 kcal Electronic energy + Delta-G solvation = -31740.926049 eV Core-core repulsion = 27575.959449 eV Total energy + Delta-G solvation = -4164.966600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79800 -39.28055 -37.17558 -36.96374 -36.70514 -34.58593 -34.17543 -32.64722 -31.51930 -29.63887 -29.07193 -27.27501 -27.14733 -25.56160 -24.15856 -23.30658 -23.02897 -22.09182 -19.86322 -19.61599 -17.93145 -17.70001 -17.21102 -16.87473 -16.50310 -16.16957 -15.95312 -15.51623 -15.02615 -14.90733 -14.46218 -14.34310 -14.08943 -13.78334 -13.69447 -13.43297 -13.23998 -13.15075 -12.82454 -12.52269 -12.41382 -12.30126 -12.18999 -12.15602 -11.82824 -11.76105 -11.33005 -11.16113 -11.13883 -11.01701 -10.91283 -10.78408 -10.63798 -10.51188 -10.31756 -10.22941 -10.16007 -9.73662 -9.63786 -9.20343 -8.66760 -8.47301 -7.77746 -6.08569 -4.13956 1.41594 2.09850 2.49236 3.12701 3.27445 3.35590 3.38212 3.54881 4.02980 4.17186 4.39647 4.45108 4.58605 4.84150 4.85084 4.90897 4.92247 4.99322 5.01447 5.07822 5.13027 5.24996 5.28926 5.37703 5.42334 5.51190 5.54407 5.62356 5.63338 5.69862 5.79757 5.87378 5.90330 5.97194 6.06736 6.13610 6.18016 6.21405 6.30526 6.47737 6.63260 6.97447 7.37161 7.43734 7.48014 7.60314 7.86797 7.98334 8.16339 8.23148 8.73206 8.92947 9.51249 10.99557 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011361 B = 0.003882 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.086423 B = 7211.922518 C = 8354.268605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.134 4.134 5 C 0.113 3.887 6 N -0.576 5.576 7 C 0.245 3.755 8 C -0.530 4.530 9 H 0.059 0.941 10 C 0.063 3.937 11 N -0.892 5.892 12 Si 0.897 3.103 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.574 3.426 17 O -0.521 6.521 18 C 0.093 3.907 19 N -0.196 5.196 20 N -0.451 5.451 21 C 0.137 3.863 22 C 0.060 3.940 23 O -0.556 6.556 24 C 0.496 3.504 25 O -0.532 6.532 26 C -0.141 4.141 27 C -0.112 4.112 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.048 0.952 41 H 0.263 0.737 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.375 0.625 47 H 0.116 0.884 48 H 0.107 0.893 49 H 0.100 0.900 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.351 11.961 -2.732 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.172 4.172 5 C -0.011 4.011 6 N -0.307 5.307 7 C 0.127 3.873 8 C -0.569 4.569 9 H 0.078 0.922 10 C -0.139 4.139 11 N -0.530 5.530 12 Si 0.725 3.275 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.209 1.209 16 C 0.355 3.645 17 O -0.396 6.396 18 C -0.105 4.105 19 N -0.005 5.005 20 N -0.271 5.271 21 C 0.016 3.984 22 C -0.019 4.019 23 O -0.360 6.360 24 C 0.284 3.716 25 O -0.407 6.407 26 C -0.181 4.181 27 C -0.152 4.152 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.221 0.779 47 H 0.134 0.866 48 H 0.125 0.875 49 H 0.118 0.882 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.130 12.462 -2.478 19.757 hybrid contribution -0.561 -1.339 -0.005 1.452 sum -15.691 11.123 -2.483 19.393 Atomic orbital electron populations 1.21887 0.95751 1.01477 1.01138 1.21041 0.95401 0.96184 0.98586 1.21808 1.01125 0.95978 1.01247 1.22091 1.02017 0.95151 0.97956 1.21555 0.98892 0.92096 0.88603 1.48189 1.14464 1.54337 1.13693 1.19400 0.74695 0.93933 0.99294 1.21442 0.94752 0.98004 1.42664 0.92233 1.24919 0.95434 0.98345 0.95237 1.69940 0.99430 1.37303 1.46359 0.86455 0.78045 0.84526 0.78459 1.19755 1.20976 1.20864 1.17160 0.82743 0.79790 0.84772 1.90859 1.76176 1.45200 1.27343 1.24967 0.97469 0.92072 0.95955 1.75093 0.97648 1.15727 1.11983 1.48930 1.01531 1.07362 1.69238 1.21559 1.02873 0.77642 0.96346 1.22537 0.87710 0.99106 0.92551 1.86677 1.35692 1.80535 1.33101 1.21288 0.85182 0.89461 0.75670 1.90694 1.19792 1.81302 1.48873 1.21823 0.99153 0.92513 1.04612 1.21020 0.91634 1.00522 1.01996 0.92934 0.92933 0.93138 0.91111 0.92600 0.93131 0.92825 0.91138 0.91175 0.89880 0.91963 0.94436 0.93429 0.92688 0.88435 0.87901 0.92458 0.93478 0.77878 0.86615 0.87458 0.88197 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.05 37.16 0.34 -1.16 16 2 C -0.09 -1.06 2.91 -90.62 -0.26 -1.32 16 3 C -0.14 -1.48 9.19 37.16 0.34 -1.14 16 4 C -0.13 -1.90 5.00 -26.73 -0.13 -2.03 16 5 C 0.11 1.78 5.19 -4.05 -0.02 1.76 16 6 N -0.58 -11.67 2.46 -176.59 -0.43 -12.10 16 7 C 0.25 6.11 5.22 -5.19 -0.03 6.08 16 8 C -0.53 -14.21 9.39 -34.44 -0.32 -14.53 16 9 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 12 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 13 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.57 11.71 7.22 -12.83 -0.09 11.62 16 17 O -0.52 -12.89 16.66 5.23 0.09 -12.80 16 18 C 0.09 1.48 4.52 -80.14 -0.36 1.12 16 19 N -0.20 -3.03 11.33 34.90 0.40 -2.64 16 20 N -0.45 -6.06 3.41 -60.29 -0.21 -6.27 16 21 C 0.14 1.51 6.03 -4.04 -0.02 1.48 16 22 C 0.06 0.60 7.38 37.16 0.27 0.87 16 23 O -0.56 -6.54 13.60 -35.23 -0.48 -7.02 16 24 C 0.50 6.70 7.53 -10.97 -0.08 6.62 16 25 O -0.53 -8.14 16.72 5.59 0.09 -8.04 16 26 C -0.14 -1.59 6.20 -27.84 -0.17 -1.76 16 27 C -0.11 -1.38 6.01 -27.95 -0.17 -1.55 16 28 H 0.05 0.56 6.38 -51.93 -0.33 0.23 16 29 H 0.05 0.54 7.25 -51.93 -0.38 0.17 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.08 1.34 8.11 -51.92 -0.42 0.92 16 38 H 0.06 0.87 4.89 -51.93 -0.25 0.62 16 39 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 40 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.10 1.03 7.25 -51.93 -0.38 0.65 16 43 H 0.10 1.00 7.51 -51.93 -0.39 0.61 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.38 2.72 9.12 45.56 0.42 3.14 16 47 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 49 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.11 1.35 8.07 -51.93 -0.42 0.93 16 LS Contribution 412.45 15.07 6.22 6.22 Total: -1.00 -34.21 412.45 -7.00 -41.21 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.57 Total: 2.66 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -0.82 Total: 7.69 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.49 Total: -45.89 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.30 Total: -27.86 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.21 -7.00 -41.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362100453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.495 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds