Wall clock time and date at job start Sat Apr 11 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47240 * 2 1 4 4 C 1.52998 * 109.47497 * 120.00165 * 2 1 3 5 5 C 1.52999 * 109.47260 * 65.84814 * 4 2 1 6 6 N 1.46493 * 109.47282 * 182.20853 * 5 4 2 7 7 C 1.46503 * 120.00190 * 274.84685 * 6 5 4 8 8 C 1.50696 * 109.47261 * 269.99938 * 7 6 5 9 9 H 1.08010 * 119.99990 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00330 * 179.97438 * 8 7 6 11 11 N 1.31511 * 119.99774 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00212 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47251 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46686 * 120.00547 * 12 10 8 15 15 H 1.48498 * 109.47387 * 240.00223 * 12 10 8 16 16 C 1.34780 * 120.00067 * 94.84819 * 6 5 4 17 17 O 1.21657 * 119.99888 * 185.35874 * 16 6 5 18 18 C 1.46733 * 119.99683 * 5.36166 * 16 6 5 19 19 N 1.29695 * 119.54437 * 274.29806 * 18 16 6 20 20 N 1.39861 * 121.13770 * 180.39163 * 19 18 16 21 21 C 1.46498 * 119.79639 * 199.19670 * 20 19 18 22 22 C 1.52997 * 109.46904 * 266.99896 * 21 20 19 23 23 O 1.42897 * 109.47608 * 64.40990 * 22 21 20 24 24 C 1.34744 * 120.40934 * 19.16389 * 20 19 18 25 25 O 1.21247 * 120.12492 * 179.75242 * 24 20 19 26 26 C 1.50769 * 119.75215 * 359.73588 * 24 20 19 27 27 C 1.50541 * 119.54784 * 94.57540 * 18 16 6 28 28 H 1.08998 * 109.47153 * 183.79557 * 1 2 3 29 29 H 1.09002 * 109.46939 * 303.79267 * 1 2 3 30 30 H 1.08996 * 109.47604 * 63.79286 * 1 2 3 31 31 H 1.09002 * 109.47100 * 240.00512 * 2 1 3 32 32 H 1.08997 * 109.47562 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47113 * 300.00529 * 3 2 1 34 34 H 1.09000 * 109.46801 * 59.99714 * 3 2 1 35 35 H 1.09004 * 109.46943 * 305.85211 * 4 2 1 36 36 H 1.08997 * 109.47285 * 185.84922 * 4 2 1 37 37 H 1.09007 * 109.46784 * 62.20690 * 5 4 2 38 38 H 1.09004 * 109.47328 * 302.21458 * 5 4 2 39 39 H 1.09002 * 109.46774 * 30.00156 * 7 6 5 40 40 H 1.09005 * 109.47010 * 150.00004 * 7 6 5 41 41 H 0.97005 * 120.00219 * 179.97438 * 11 10 8 42 42 H 1.09007 * 109.47164 * 26.99684 * 21 20 19 43 43 H 1.08995 * 109.47360 * 146.99376 * 21 20 19 44 44 H 1.09001 * 109.47193 * 184.41244 * 22 21 20 45 45 H 1.09001 * 109.47147 * 304.40580 * 22 21 20 46 46 H 0.96701 * 114.00313 * 175.00918 * 23 22 21 47 47 H 1.09001 * 109.51925 * 206.81285 * 26 24 20 48 48 H 1.09002 * 109.51480 * 86.65942 * 26 24 20 49 49 H 1.08999 * 109.44481 * 265.58253 * 27 18 16 50 50 H 1.08994 * 109.45228 * 25.50742 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6537 -2.1999 1.1779 6 7 2.0958 -2.8796 2.3979 7 6 3.4654 -3.3903 2.4966 8 6 3.5099 -4.8094 1.9916 9 1 2.6083 -5.2834 1.6325 10 6 4.7019 -5.5025 1.9868 11 7 5.7998 -4.9252 2.4236 12 14 4.7569 -7.2618 1.3614 13 1 3.3979 -7.6766 0.9300 14 1 5.6897 -7.3484 0.2091 15 1 5.2273 -8.1588 2.4474 16 6 1.2426 -3.0351 3.4297 17 8 1.6360 -3.5112 4.4778 18 6 -0.1606 -2.6302 3.2886 19 7 -0.4971 -1.3988 3.5180 20 7 -1.8259 -0.9784 3.4015 21 6 -2.1277 0.4468 3.2469 22 6 -2.3884 1.0649 4.6219 23 8 -1.1957 1.0019 5.4065 24 6 -2.8303 -1.8762 3.4299 25 8 -3.9806 -1.5057 3.3330 26 6 -2.5182 -3.3434 3.5823 27 6 -1.1910 -3.6511 2.8857 28 1 -0.3633 -1.0254 0.0680 29 1 -0.3633 0.5716 0.8541 30 1 -0.3634 0.4538 -0.9220 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.5937 -0.2715 2.1361 36 1 3.1250 -0.6314 1.3030 37 1 2.1318 -2.6590 0.3125 38 1 0.5713 -2.2886 1.0844 39 1 4.1289 -2.7694 1.8948 40 1 3.7886 -3.3648 3.5374 41 1 6.6384 -5.4129 2.4206 42 1 -1.2815 0.9486 2.7775 43 1 -3.0126 0.5651 2.6216 44 1 -2.6893 2.1056 4.5014 45 1 -3.1830 0.5128 5.1238 46 1 -1.2649 1.4441 6.2637 47 1 -3.3135 -3.9340 3.1277 48 1 -2.4397 -3.5909 4.6410 49 1 -1.3319 -3.6176 1.8054 50 1 -0.8504 -4.6448 3.1764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362100453.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:01 Heat of formation + Delta-G solvation = -114.193340 kcal Electronic energy + Delta-G solvation = -31741.987935 eV Core-core repulsion = 27575.959449 eV Total energy + Delta-G solvation = -4166.028486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.93477 -40.78056 -38.23382 -38.07797 -37.84055 -36.14957 -35.20288 -34.58547 -32.61836 -30.79047 -30.40766 -28.96228 -27.98021 -26.72844 -25.57193 -24.75031 -24.14928 -23.33720 -21.02307 -20.83471 -19.10798 -18.73870 -18.54209 -18.33342 -17.92989 -17.59174 -17.15241 -16.85779 -16.26974 -16.12433 -15.89820 -15.60864 -15.16757 -14.88165 -14.70875 -14.55586 -14.48956 -14.41122 -14.12202 -13.80720 -13.71012 -13.50228 -13.30762 -13.20550 -13.04178 -12.86107 -12.75062 -12.73488 -12.53968 -12.27588 -12.23682 -12.11672 -12.01400 -11.86051 -11.52458 -11.47689 -11.40740 -11.14009 -10.92028 -10.62597 -10.60644 -9.75741 -9.52461 -8.18434 -6.32761 0.21263 0.95256 1.41374 1.42447 1.44328 1.55236 1.62860 2.15714 2.43710 2.90095 3.13014 3.34285 3.44559 3.46277 3.86461 3.90606 3.96136 4.01907 4.06354 4.10402 4.12564 4.23283 4.27751 4.40514 4.56512 4.58803 4.62525 4.66848 4.68307 4.74754 4.82582 4.88279 4.94507 5.00143 5.06379 5.08466 5.14621 5.16934 5.19575 5.26351 5.37401 5.47510 5.53825 5.60931 5.81459 6.07095 6.52681 6.55675 6.75666 6.85993 6.87469 7.13223 7.38821 8.89590 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011361 B = 0.003882 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.086423 B = 7211.922518 C = 8354.268605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.125 4.125 5 C 0.112 3.888 6 N -0.578 5.578 7 C 0.262 3.738 8 C -0.541 4.541 9 H 0.063 0.937 10 C 0.010 3.990 11 N -0.928 5.928 12 Si 0.967 3.033 13 H -0.261 1.261 14 H -0.274 1.274 15 H -0.284 1.284 16 C 0.571 3.429 17 O -0.576 6.576 18 C 0.087 3.913 19 N -0.201 5.201 20 N -0.448 5.448 21 C 0.127 3.873 22 C 0.062 3.938 23 O -0.584 6.584 24 C 0.493 3.507 25 O -0.549 6.549 26 C -0.135 4.135 27 C -0.107 4.107 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.027 0.973 40 H 0.002 0.998 41 H 0.266 0.734 42 H 0.101 0.899 43 H 0.119 0.881 44 H 0.090 0.910 45 H 0.036 0.964 46 H 0.392 0.608 47 H 0.145 0.855 48 H 0.109 0.891 49 H 0.124 0.876 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.773 12.104 -4.596 21.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.199 4.199 4 C -0.163 4.163 5 C -0.010 4.010 6 N -0.307 5.307 7 C 0.141 3.859 8 C -0.579 4.579 9 H 0.081 0.919 10 C -0.189 4.189 11 N -0.568 5.568 12 Si 0.791 3.209 13 H -0.184 1.184 14 H -0.199 1.199 15 H -0.211 1.211 16 C 0.355 3.645 17 O -0.455 6.455 18 C -0.110 4.110 19 N -0.010 5.010 20 N -0.268 5.268 21 C 0.006 3.994 22 C -0.017 4.017 23 O -0.392 6.392 24 C 0.282 3.718 25 O -0.424 6.424 26 C -0.175 4.175 27 C -0.147 4.147 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.045 0.955 40 H 0.020 0.980 41 H 0.075 0.925 42 H 0.119 0.881 43 H 0.137 0.863 44 H 0.108 0.892 45 H 0.054 0.946 46 H 0.241 0.759 47 H 0.163 0.837 48 H 0.127 0.873 49 H 0.142 0.858 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.584 12.646 -4.369 22.096 hybrid contribution 0.195 -1.247 0.633 1.412 sum -17.389 11.399 -3.737 21.126 Atomic orbital electron populations 1.21851 0.94407 1.01467 1.02115 1.21019 0.96452 0.96459 0.96800 1.21787 1.00709 0.95307 1.02131 1.21995 1.00670 0.94334 0.99348 1.21790 1.00303 0.92495 0.86443 1.48142 1.12929 1.54260 1.15386 1.18858 0.77250 0.93729 0.96082 1.21723 0.94978 0.98761 1.42456 0.91869 1.25830 0.95015 1.02758 0.95325 1.70068 1.00099 1.39167 1.47474 0.85375 0.78681 0.78916 0.77897 1.18447 1.19906 1.21052 1.17728 0.84421 0.78627 0.83679 1.90820 1.77700 1.47621 1.29315 1.24442 0.95499 0.93495 0.97527 1.74989 0.99362 1.15680 1.10983 1.49070 1.00471 1.08421 1.68796 1.21881 1.03662 0.76401 0.97411 1.22586 0.86731 1.00784 0.91591 1.86623 1.36792 1.81222 1.34516 1.21640 0.84813 0.90253 0.75055 1.90691 1.20286 1.81758 1.49692 1.21882 0.99188 0.91420 1.04977 1.21098 0.90864 0.99213 1.03499 0.93253 0.92983 0.91284 0.90653 0.93330 0.91215 0.92940 0.92199 0.93278 0.90086 0.89392 0.95475 0.97974 0.92483 0.88056 0.86333 0.89170 0.94555 0.75932 0.83735 0.87260 0.85805 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.05 71.98 0.65 -1.88 16 2 C -0.09 -1.87 2.91 -10.79 -0.03 -1.90 16 3 C -0.14 -2.70 9.19 71.98 0.66 -2.04 16 4 C -0.12 -3.56 5.00 30.59 0.15 -3.41 16 5 C 0.11 3.53 5.19 86.38 0.45 3.97 16 6 N -0.58 -24.16 2.46 -830.84 -2.04 -26.20 16 7 C 0.26 13.72 5.22 85.63 0.45 14.16 16 8 C -0.54 -29.66 9.39 25.60 0.24 -29.42 16 9 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 10 C 0.01 0.55 5.46 84.66 0.46 1.01 16 11 N -0.93 -54.86 13.29 21.45 0.28 -54.58 16 12 Si 0.97 43.15 29.54 68.60 2.03 45.17 16 13 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 16 C 0.57 24.01 7.22 86.46 0.62 24.63 16 17 O -0.58 -29.95 16.66 -4.21 -0.07 -30.02 16 18 C 0.09 2.73 4.52 45.05 0.20 2.93 16 19 N -0.20 -6.06 11.33 -43.50 -0.49 -6.55 16 20 N -0.45 -11.23 3.41 -463.07 -1.58 -12.81 16 21 C 0.13 2.52 6.03 86.38 0.52 3.04 16 22 C 0.06 1.12 7.38 71.98 0.53 1.65 16 23 O -0.58 -13.15 13.60 -148.98 -2.03 -15.18 16 24 C 0.49 12.21 7.53 87.68 0.66 12.87 16 25 O -0.55 -15.45 16.72 -2.93 -0.05 -15.50 16 26 C -0.13 -2.70 6.20 29.87 0.19 -2.51 16 27 C -0.11 -2.43 6.01 29.80 0.18 -2.25 16 28 H 0.05 0.91 6.38 -2.39 -0.02 0.90 16 29 H 0.05 0.94 7.25 -2.39 -0.02 0.93 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.84 8.13 -2.38 -0.02 1.82 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 2.60 8.11 -2.38 -0.02 2.58 16 38 H 0.09 2.33 4.89 -2.39 -0.01 2.32 16 39 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 40 H 0.00 0.13 7.35 -2.38 -0.02 0.11 16 41 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 42 H 0.10 1.93 7.25 -2.38 -0.02 1.91 16 43 H 0.12 1.98 7.51 -2.39 -0.02 1.96 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.39 5.33 9.12 -74.06 -0.68 4.66 16 47 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 49 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.11 2.54 8.07 -2.39 -0.02 2.52 16 Total: -1.00 -76.66 412.45 2.26 -74.40 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.26 Total: 20.39 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: 5.94 Total: 20.87 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -3.83 Total: -100.13 kcal Atomic # 8 Polarization: -58.56 SS G_CDS: -2.14 Total: -60.70 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -76.66 2.26 -74.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362100453.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.795 kcal (2) G-P(sol) polarization free energy of solvation -76.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds