Wall clock time and date at job start Sat Apr 11 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38045 * 126.28976 * 2 1 4 4 C 1.47428 * 126.41413 * 359.71186 * 3 2 1 5 5 O 1.21603 * 120.00270 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99919 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99969 * 180.02562 * 6 4 3 8 8 C 1.53005 * 109.46972 * 180.02562 * 7 6 4 9 9 H 1.08999 * 109.46930 * 304.99977 * 8 7 6 10 10 O 1.42902 * 109.47054 * 65.00003 * 8 7 6 11 11 C 1.53003 * 109.47110 * 184.99769 * 8 7 6 12 12 O 1.42897 * 109.47237 * 174.99680 * 11 8 7 13 13 C 1.42903 * 114.00142 * 179.97438 * 12 11 8 14 14 C 1.52998 * 109.47091 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.46799 * 175.00109 * 14 13 12 16 16 C 1.53004 * 109.47427 * 295.00421 * 14 13 12 17 17 C 1.41290 * 107.17003 * 179.73433 * 3 2 1 18 18 N 1.30448 * 108.01917 * 0.02562 * 17 3 2 19 19 N 1.34259 * 126.29027 * 179.68749 * 2 1 3 20 20 C 1.46494 * 125.75336 * 0.23997 * 19 2 1 21 21 C 1.50700 * 109.47034 * 90.00525 * 20 19 2 22 22 H 1.08000 * 120.00118 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00281 * 179.97438 * 21 20 19 24 24 N 1.31520 * 120.00059 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00448 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47048 * 59.99759 * 25 23 21 27 27 H 1.48499 * 109.47441 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.46695 * 299.99858 * 25 23 21 29 29 H 1.08995 * 109.47029 * 90.02469 * 1 2 3 30 30 H 1.09001 * 109.47030 * 210.02410 * 1 2 3 31 31 H 1.09002 * 109.47083 * 330.02702 * 1 2 3 32 32 H 0.97000 * 120.00146 * 0.02562 * 6 4 3 33 33 H 1.09000 * 109.47456 * 299.99853 * 7 6 4 34 34 H 1.08993 * 109.47342 * 60.00310 * 7 6 4 35 35 H 0.96700 * 114.00089 * 60.00106 * 10 8 7 36 36 H 1.08993 * 109.47378 * 294.99994 * 11 8 7 37 37 H 1.09004 * 109.47110 * 54.99872 * 11 8 7 38 38 H 1.08994 * 109.47175 * 300.00505 * 13 12 11 39 39 H 1.08997 * 109.46511 * 60.00337 * 13 12 11 40 40 H 1.09000 * 109.47281 * 55.00360 * 14 13 12 41 41 H 1.08992 * 109.47107 * 60.00721 * 15 14 13 42 42 H 1.09009 * 109.46833 * 180.02562 * 15 14 13 43 43 H 1.09001 * 109.47224 * 300.00261 * 15 14 13 44 44 H 1.08998 * 109.47161 * 59.99748 * 16 14 13 45 45 H 1.08995 * 109.46772 * 180.02562 * 16 14 13 46 46 H 1.09000 * 109.46840 * 300.00209 * 16 14 13 47 47 H 1.07998 * 125.98994 * 179.97438 * 17 3 2 48 48 H 1.09003 * 109.46965 * 209.99756 * 20 19 2 49 49 H 1.09000 * 109.47680 * 330.00516 * 20 19 2 50 50 H 0.96997 * 120.00149 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0060 5 8 0.6996 2.7878 -0.0111 6 7 2.7999 3.5107 -0.0047 7 6 2.3643 4.9094 -0.0100 8 6 3.5900 5.8252 -0.0079 9 1 4.2307 5.5727 0.8370 10 8 4.3170 5.6509 -1.2258 11 6 3.1380 7.2820 0.1122 12 8 4.2835 8.1279 0.2314 13 6 3.9704 9.5172 0.3494 14 6 5.2651 10.3233 0.4709 15 6 4.9372 11.8177 0.4719 16 6 5.9743 9.9558 1.7759 17 6 3.6591 0.6499 0.0063 18 7 3.6340 -0.6543 0.0092 19 7 2.3017 -1.0822 0.0059 20 6 1.8501 -2.4757 0.0085 21 6 1.7002 -2.9579 -1.4114 22 1 1.9190 -2.2926 -2.2335 23 6 1.2836 -4.2483 -1.6610 24 7 1.0177 -5.0587 -0.6599 25 14 1.0971 -4.8457 -3.4211 26 1 2.4051 -4.7499 -4.1176 27 1 0.6406 -6.2588 -3.4185 28 1 0.0978 -4.0035 -4.1263 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 3.7461 3.2974 -0.0002 33 1 1.7694 5.1014 -0.9030 34 1 1.7621 5.1059 0.8769 35 1 3.8074 5.8581 -2.0211 36 1 2.5712 7.5610 -0.7760 37 1 2.5090 7.3957 0.9951 38 1 3.4211 9.8422 -0.5341 39 1 3.3585 9.6775 1.2371 40 1 5.9160 10.0947 -0.3731 41 1 4.2865 12.0463 1.3159 42 1 5.8598 12.3920 0.5580 43 1 4.4320 12.0795 -0.4578 44 1 6.2078 8.8911 1.7752 45 1 6.8964 10.5304 1.8625 46 1 5.3235 10.1844 2.6199 47 1 4.5449 1.2677 0.0075 48 1 2.5830 -3.0942 0.5267 49 1 0.8897 -2.5456 0.5192 50 1 0.7250 -5.9666 -0.8354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362110624.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:03 Heat of formation + Delta-G solvation = -110.986103 kcal Electronic energy + Delta-G solvation = -28637.377505 eV Core-core repulsion = 24471.488096 eV Total energy + Delta-G solvation = -4165.889410 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.30617 -40.36598 -39.49685 -38.08364 -35.83951 -35.76274 -35.24162 -33.80935 -32.76773 -31.46359 -29.29469 -28.33468 -28.00150 -27.30220 -25.91564 -25.15728 -23.29485 -22.86245 -21.25994 -21.09423 -20.50773 -18.86276 -18.61350 -18.02905 -17.67679 -17.08958 -16.86633 -16.58667 -16.39212 -16.29456 -16.09778 -15.59535 -15.32377 -15.24726 -14.84360 -14.54524 -14.46060 -14.27945 -14.04083 -13.84445 -13.67351 -13.56590 -13.39030 -13.24100 -13.08445 -13.03142 -12.96888 -12.78453 -12.68945 -12.30094 -11.97312 -11.92226 -11.87869 -11.76006 -11.72871 -11.46678 -11.13463 -10.77027 -10.75469 -10.55145 -10.26548 -10.11078 -9.43131 -8.37753 -6.54396 0.68740 1.32865 1.38556 1.39387 1.47757 1.65035 2.16644 2.32804 2.55237 2.77767 2.94470 3.47653 3.73286 3.74885 3.81449 3.94872 3.95201 4.03808 4.10595 4.15025 4.25068 4.30242 4.42142 4.48575 4.52165 4.57105 4.62670 4.64674 4.73019 4.77892 4.80859 4.82451 4.90450 5.01507 5.04181 5.06729 5.08254 5.17993 5.24912 5.40830 5.44589 5.47951 5.50670 5.67953 5.74781 6.05090 6.26351 6.54367 6.60840 6.80330 6.85365 7.16732 7.35587 8.69925 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029181 B = 0.001632 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.302599 B =17151.535186 C =17219.676893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.145 3.855 3 C -0.332 4.332 4 C 0.606 3.394 5 O -0.583 6.583 6 N -0.711 5.711 7 C 0.097 3.903 8 C 0.111 3.889 9 H 0.110 0.890 10 O -0.564 6.564 11 C 0.034 3.966 12 O -0.397 6.397 13 C 0.062 3.938 14 C -0.097 4.097 15 C -0.143 4.143 16 C -0.143 4.143 17 C 0.079 3.921 18 N -0.337 5.337 19 N -0.338 5.338 20 C 0.267 3.733 21 C -0.558 4.558 22 H 0.052 0.948 23 C 0.025 3.975 24 N -0.916 5.916 25 Si 0.971 3.029 26 H -0.274 1.274 27 H -0.272 1.272 28 H -0.266 1.266 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.412 0.588 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.388 0.612 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.224 0.776 48 H 0.031 0.969 49 H 0.051 0.949 50 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 31.425 2.648 31.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.009 3.991 3 C -0.347 4.347 4 C 0.396 3.604 5 O -0.465 6.465 6 N -0.363 5.363 7 C -0.027 4.027 8 C 0.051 3.949 9 H 0.128 0.872 10 O -0.371 6.371 11 C -0.044 4.044 12 O -0.317 6.317 13 C -0.014 4.014 14 C -0.115 4.115 15 C -0.200 4.200 16 C -0.201 4.201 17 C -0.108 4.108 18 N -0.157 5.157 19 N -0.115 5.115 20 C 0.148 3.852 21 C -0.596 4.596 22 H 0.070 0.930 23 C -0.176 4.176 24 N -0.554 5.554 25 Si 0.795 3.205 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.191 1.191 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.249 0.751 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.237 0.763 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.240 0.760 48 H 0.049 0.951 49 H 0.069 0.931 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.047 29.957 3.128 30.540 hybrid contribution -0.795 -0.045 -1.036 1.307 sum 4.252 29.912 2.092 30.285 Atomic orbital electron populations 1.20551 0.85803 1.04059 1.03926 1.21986 0.95966 0.86716 0.94433 1.19961 0.93186 0.93177 1.28358 1.17068 0.85011 0.83782 0.74589 1.90678 1.17834 1.84707 1.53244 1.45414 1.10051 1.05119 1.75749 1.21925 0.96920 0.80243 1.03569 1.21982 0.92419 0.91494 0.88967 0.87185 1.86620 1.43440 1.91023 1.16054 1.23132 0.88619 0.90211 1.02395 1.87901 1.31619 1.17425 1.94735 1.22724 0.97522 0.80607 1.00594 1.21119 0.95927 0.95368 0.99131 1.21768 1.02374 0.93455 1.02447 1.21770 1.00414 1.01274 0.96612 1.24484 0.97700 0.91598 0.96998 1.77097 0.98355 1.14440 1.25782 1.49110 1.03376 1.07776 1.51271 1.19365 0.95292 0.72356 0.98140 1.21375 1.48114 0.98537 0.91581 0.93013 1.25720 0.93754 0.95905 1.02261 1.69988 1.44717 1.07650 1.33052 0.85409 0.78808 0.77704 0.78618 1.19897 1.19703 1.19116 0.89917 0.91080 0.87888 0.75109 0.90803 0.90183 0.76286 0.91331 0.90941 0.92609 0.92626 0.91361 0.91977 0.91558 0.92019 0.93385 0.92208 0.92463 0.76018 0.95100 0.93088 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.13 9.56 71.24 0.68 -2.45 16 2 C 0.14 5.98 7.01 42.14 0.30 6.27 16 3 C -0.33 -11.82 6.13 -20.15 -0.12 -11.95 16 4 C 0.61 18.82 7.81 86.66 0.68 19.50 16 5 O -0.58 -20.96 14.84 -4.04 -0.06 -21.02 16 6 N -0.71 -15.36 5.49 -466.38 -2.56 -17.92 16 7 C 0.10 1.58 5.31 86.38 0.46 2.04 16 8 C 0.11 1.48 3.28 30.60 0.10 1.58 16 9 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 10 O -0.56 -8.88 13.25 -144.35 -1.91 -10.79 16 11 C 0.03 0.38 5.57 71.98 0.40 0.78 16 12 O -0.40 -6.19 9.84 -144.35 -1.42 -7.61 16 13 C 0.06 0.70 5.32 71.98 0.38 1.09 16 14 C -0.10 -1.06 3.16 -10.79 -0.03 -1.10 16 15 C -0.14 -1.05 9.19 71.98 0.66 -0.39 16 16 C -0.14 -1.67 9.09 71.98 0.65 -1.02 16 17 C 0.08 2.67 11.50 85.65 0.99 3.65 16 18 N -0.34 -14.70 12.50 -56.28 -0.70 -15.40 16 19 N -0.34 -15.77 3.56 -336.70 -1.20 -16.97 16 20 C 0.27 13.91 5.97 85.63 0.51 14.42 16 21 C -0.56 -30.96 9.39 25.60 0.24 -30.72 16 22 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 23 C 0.03 1.36 5.46 84.65 0.46 1.82 16 24 N -0.92 -51.41 13.29 21.45 0.28 -51.13 16 25 Si 0.97 42.76 29.54 68.60 2.03 44.78 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 28 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 29 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.07 2.58 7.04 -2.39 -0.02 2.56 16 31 H 0.10 3.53 6.51 -2.39 -0.02 3.52 16 32 H 0.41 7.49 7.43 -92.71 -0.69 6.80 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.39 3.83 9.05 -74.06 -0.67 3.16 16 36 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 38 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 43 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.05 0.71 7.82 -2.39 -0.02 0.69 16 45 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 47 H 0.22 5.02 7.50 -2.91 -0.02 5.00 16 48 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.05 2.65 7.01 -2.39 -0.02 2.63 16 50 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -70.48 418.00 0.39 -70.09 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.41 Total: 22.44 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 6.35 Total: 3.53 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -4.18 Total: -101.42 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -3.39 Total: -39.42 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -70.48 0.39 -70.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362110624.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.898 kcal (2) G-P(sol) polarization free energy of solvation -70.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds