Wall clock time and date at job start Sat Apr 11 2020 05:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38043 * 126.29427 * 2 1 4 4 C 1.47429 * 126.41497 * 359.97438 * 3 2 1 5 5 O 1.21603 * 119.99827 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00013 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00147 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47221 * 180.02562 * 7 6 4 9 9 H 1.09002 * 109.46913 * 60.00230 * 8 7 6 10 10 O 1.42893 * 109.47137 * 300.00232 * 8 7 6 11 11 C 1.52996 * 109.47192 * 180.02562 * 8 7 6 12 12 O 1.42894 * 109.47101 * 185.00107 * 11 8 7 13 13 C 1.42908 * 113.99711 * 179.97438 * 12 11 8 14 14 C 1.53000 * 109.46866 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.46897 * 175.00325 * 14 13 12 16 16 C 1.53002 * 109.47263 * 294.99947 * 14 13 12 17 17 C 1.41293 * 107.17018 * 179.97438 * 3 2 1 18 18 N 1.30448 * 108.02361 * 359.74144 * 17 3 2 19 19 N 1.34263 * 126.28514 * 179.97438 * 2 1 3 20 20 C 1.46491 * 125.75867 * 359.97438 * 19 2 1 21 21 C 1.50702 * 109.46957 * 89.99963 * 20 19 2 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 20 26 26 H 1.48496 * 109.47341 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.46983 * 120.00379 * 25 23 21 28 28 H 1.48503 * 109.47491 * 240.00192 * 25 23 21 29 29 H 1.08999 * 109.47548 * 270.02594 * 1 2 3 30 30 H 1.09005 * 109.47060 * 30.02824 * 1 2 3 31 31 H 1.08998 * 109.47841 * 150.02353 * 1 2 3 32 32 H 0.97008 * 119.99661 * 0.02562 * 6 4 3 33 33 H 1.08999 * 109.46973 * 300.00494 * 7 6 4 34 34 H 1.08996 * 109.46748 * 59.99899 * 7 6 4 35 35 H 0.96700 * 114.00645 * 299.99985 * 10 8 7 36 36 H 1.09004 * 109.47073 * 305.00247 * 11 8 7 37 37 H 1.09006 * 109.47031 * 65.00047 * 11 8 7 38 38 H 1.08994 * 109.47236 * 299.99783 * 13 12 11 39 39 H 1.09004 * 109.46974 * 60.00613 * 13 12 11 40 40 H 1.08997 * 109.47682 * 55.00161 * 14 13 12 41 41 H 1.08992 * 109.47565 * 60.00253 * 15 14 13 42 42 H 1.09008 * 109.46880 * 179.97438 * 15 14 13 43 43 H 1.08999 * 109.46973 * 299.99221 * 15 14 13 44 44 H 1.09003 * 109.47148 * 300.00288 * 16 14 13 45 45 H 1.09010 * 109.47075 * 60.00189 * 16 14 13 46 46 H 1.09002 * 109.47785 * 179.97438 * 16 14 13 47 47 H 1.07999 * 125.98923 * 179.97438 * 17 3 2 48 48 H 1.09004 * 109.47166 * 330.00229 * 20 19 2 49 49 H 1.08994 * 109.47507 * 209.99935 * 20 19 2 50 50 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.8000 3.5106 0.0001 7 6 2.3646 4.9094 -0.0010 8 6 3.5904 5.8251 -0.0007 9 1 4.1895 5.6304 -0.8902 10 8 4.3743 5.5711 1.1667 11 6 3.1356 7.2859 -0.0012 12 8 4.2756 8.1396 -0.1184 13 6 3.9594 9.5332 -0.1292 14 6 5.2483 10.3475 -0.2583 15 6 4.9022 11.8315 -0.3952 16 6 6.1110 10.1379 0.9878 17 6 3.6590 0.6497 0.0006 18 7 3.6340 -0.6545 0.0065 19 7 2.3015 -1.0823 0.0005 20 6 1.8499 -2.4758 0.0016 21 6 1.6945 -2.9547 -1.4188 22 1 1.9110 -2.2878 -2.2403 23 6 1.2820 -4.2462 -1.6697 24 7 1.0188 -5.0584 -0.6694 25 14 1.0968 -4.8421 -3.4304 26 1 1.4518 -3.7438 -4.3646 27 1 2.0008 -5.9978 -3.6595 28 1 -0.3088 -5.2587 -3.6668 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3635 -0.8901 -0.5134 32 1 3.7463 3.2971 0.0005 33 1 1.7670 5.1032 -0.8917 34 1 1.7651 5.1039 0.8882 35 1 3.9038 5.7241 1.9975 36 1 2.4652 7.4575 -0.8433 37 1 2.6126 7.5039 0.9300 38 1 3.3063 9.7510 -0.9742 39 1 3.4533 9.7981 0.7992 40 1 5.7984 10.0198 -1.1403 41 1 4.3523 12.1593 0.4869 42 1 5.8205 12.4118 -0.4867 43 1 4.2877 11.9809 -1.2829 44 1 5.5609 10.4656 1.8699 45 1 6.3575 9.0805 1.0854 46 1 7.0294 10.7176 0.8957 47 1 4.5449 1.2674 0.0004 48 1 0.8914 -2.5467 0.5158 49 1 2.5846 -3.0955 0.5156 50 1 0.7282 -5.9670 -0.8460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362110629.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:07 Heat of formation + Delta-G solvation = -87.800089 kcal Electronic energy + Delta-G solvation = -28648.177270 eV Core-core repulsion = 24483.293281 eV Total energy + Delta-G solvation = -4164.883989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.77206 -39.42462 -38.63167 -37.36862 -35.26310 -34.25495 -33.82928 -32.08102 -31.24987 -30.58946 -27.79917 -27.55357 -26.83264 -26.43769 -25.06402 -23.36843 -22.28364 -21.82517 -20.64862 -19.80331 -19.03786 -17.60769 -17.03375 -16.97085 -16.74736 -16.70045 -15.74510 -15.31316 -15.25322 -14.96296 -14.82897 -14.49869 -14.45448 -13.96920 -13.84260 -13.72838 -13.33456 -13.07813 -12.75899 -12.71118 -12.55664 -12.55119 -12.38468 -12.27324 -12.04969 -11.77253 -11.49067 -11.46797 -11.37908 -11.24454 -11.09666 -10.98728 -10.91511 -10.46962 -10.36840 -10.15797 -10.02673 -9.90813 -9.41907 -9.01164 -8.71628 -8.56809 -7.90374 -6.33717 -4.41536 2.19045 2.81258 2.87524 3.17053 3.24870 3.26868 3.35065 3.64268 3.90803 4.07665 4.24563 4.34946 4.42041 4.52865 4.55920 4.63800 4.79951 4.95021 4.99390 5.00442 5.05192 5.08181 5.13751 5.18164 5.27128 5.28293 5.43667 5.44253 5.51696 5.63603 5.65107 5.69727 5.79113 5.84523 5.95733 5.97438 6.09777 6.42858 6.56345 6.61484 6.77133 6.79977 6.90678 7.17899 7.29883 7.56767 7.73379 7.77427 7.80511 8.39412 8.59266 8.65074 9.25565 10.74478 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027819 B = 0.001630 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.250315 B =17175.508003 C =17195.238027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.166 3.834 3 C -0.333 4.333 4 C 0.605 3.395 5 O -0.559 6.559 6 N -0.729 5.729 7 C 0.096 3.904 8 C 0.100 3.900 9 H 0.114 0.886 10 O -0.548 6.548 11 C 0.034 3.966 12 O -0.375 6.375 13 C 0.065 3.935 14 C -0.095 4.095 15 C -0.147 4.147 16 C -0.145 4.145 17 C 0.059 3.941 18 N -0.296 5.296 19 N -0.314 5.314 20 C 0.250 3.750 21 C -0.540 4.540 22 H 0.066 0.934 23 C 0.067 3.933 24 N -0.889 5.889 25 Si 0.908 3.092 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.404 0.596 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.376 0.624 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.053 0.947 47 H 0.176 0.824 48 H 0.057 0.943 49 H 0.057 0.943 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.482 29.230 3.174 29.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.028 3.972 3 C -0.349 4.349 4 C 0.395 3.605 5 O -0.438 6.438 6 N -0.382 5.382 7 C -0.029 4.029 8 C 0.040 3.960 9 H 0.132 0.868 10 O -0.352 6.352 11 C -0.044 4.044 12 O -0.294 6.294 13 C -0.012 4.012 14 C -0.114 4.114 15 C -0.204 4.204 16 C -0.202 4.202 17 C -0.128 4.128 18 N -0.115 5.115 19 N -0.091 5.091 20 C 0.133 3.867 21 C -0.579 4.579 22 H 0.084 0.916 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.735 3.265 26 H -0.195 1.195 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.101 0.899 32 H 0.239 0.761 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.223 0.777 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.193 0.807 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.903 27.752 2.775 28.319 hybrid contribution -0.791 0.462 -0.542 1.064 sum 4.112 28.214 2.234 28.599 Atomic orbital electron populations 1.20609 0.86881 1.04829 1.03240 1.21469 0.94942 0.86523 0.94243 1.19645 0.93189 0.92391 1.29643 1.17312 0.84888 0.83940 0.74319 1.90687 1.16755 1.84502 1.51881 1.45533 1.10268 1.04627 1.77755 1.21763 0.96069 0.81896 1.03174 1.22129 0.92552 0.90681 0.90651 0.86842 1.86641 1.42123 1.90936 1.15543 1.23112 0.89010 0.91079 1.01172 1.87936 1.30944 1.15682 1.94832 1.22613 0.97192 0.81337 1.00039 1.21096 0.95670 0.94529 1.00104 1.21795 1.01929 0.94827 1.01861 1.21793 0.99123 1.02686 0.96626 1.23751 0.96380 0.92603 1.00075 1.77147 0.98580 1.12297 1.23519 1.49377 1.02503 1.08285 1.48927 1.19854 0.96420 0.70953 0.99443 1.21308 1.47450 0.98067 0.91056 0.91576 1.24927 0.94449 0.95986 0.98296 1.69926 1.44596 1.07095 1.31042 0.86270 0.77949 0.78857 0.83453 1.19525 1.20564 1.20546 0.90542 0.88660 0.89900 0.76115 0.90612 0.91241 0.77709 0.92076 0.92680 0.93415 0.93373 0.90328 0.92519 0.91947 0.92521 0.92996 0.91545 0.92828 0.80677 0.92563 0.92478 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.34 36.00 0.34 -1.43 16 2 C 0.17 3.40 7.01 -81.60 -0.57 2.82 16 3 C -0.33 -6.13 6.13 -105.07 -0.64 -6.78 16 4 C 0.60 9.94 7.81 -12.52 -0.10 9.84 16 5 O -0.56 -10.46 14.84 5.27 0.08 -10.38 16 6 N -0.73 -8.79 5.44 -61.39 -0.33 -9.12 16 7 C 0.10 0.90 5.34 -4.04 -0.02 0.88 16 8 C 0.10 0.78 3.34 -26.73 -0.09 0.69 16 9 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 10 O -0.55 -4.77 13.05 -40.12 -0.52 -5.29 16 11 C 0.03 0.23 5.57 37.16 0.21 0.44 16 12 O -0.37 -3.24 9.84 -40.12 -0.39 -3.63 16 13 C 0.06 0.43 5.32 37.16 0.20 0.62 16 14 C -0.10 -0.59 3.16 -90.62 -0.29 -0.87 16 15 C -0.15 -0.67 9.19 37.16 0.34 -0.33 16 16 C -0.14 -0.93 9.09 37.16 0.34 -0.59 16 17 C 0.06 1.04 11.50 -16.98 -0.20 0.85 16 18 N -0.30 -6.43 12.50 30.86 0.39 -6.04 16 19 N -0.31 -7.16 3.56 -57.78 -0.21 -7.36 16 20 C 0.25 6.26 5.78 -5.20 -0.03 6.23 16 21 C -0.54 -14.60 9.39 -34.44 -0.32 -14.93 16 22 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 23 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 24 N -0.89 -24.59 13.29 55.43 0.74 -23.86 16 25 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.69 6.50 -51.93 -0.34 1.36 16 31 H 0.08 1.56 7.70 -51.93 -0.40 1.16 16 32 H 0.40 4.31 7.30 -40.82 -0.30 4.01 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.38 2.18 9.05 45.56 0.41 2.59 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 43 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.53 7.82 -51.92 -0.41 0.12 16 46 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.18 2.29 7.50 -52.49 -0.39 1.90 16 48 H 0.06 1.39 7.62 -51.93 -0.40 1.00 16 49 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 50 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 418.54 15.07 6.31 6.31 Total: -1.00 -32.40 418.54 -7.61 -40.01 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.71 Total: 4.38 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.94 Total: -0.84 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.58 Total: -46.39 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.84 Total: -19.30 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.40 -7.61 -40.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362110629.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.786 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds