Wall clock time and date at job start Sat Apr 11 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47379 * 2 1 4 4 C 1.52994 * 109.47401 * 239.99840 * 2 1 3 5 5 C 1.50702 * 109.47167 * 59.99872 * 4 2 1 6 6 H 1.07996 * 119.99846 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00114 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00000 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00260 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46805 * 59.99963 * 9 7 5 11 11 H 1.48493 * 109.47416 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46923 * 300.00582 * 9 7 5 13 13 C 1.53001 * 109.47034 * 119.99564 * 2 1 3 14 14 N 1.46496 * 109.47629 * 299.99988 * 13 2 1 15 15 C 1.34772 * 120.00546 * 179.97438 * 14 13 2 16 16 O 1.21589 * 119.99752 * 4.98992 * 15 14 13 17 17 N 1.34775 * 120.00490 * 184.98236 * 15 14 13 18 18 C 1.46815 * 120.33342 * 174.78061 * 17 15 14 19 19 C 1.53444 * 109.41057 * 128.12481 * 18 17 15 20 20 C 1.52726 * 108.60218 * 53.58145 * 19 18 17 21 21 H 1.09009 * 109.41275 * 57.16356 * 20 19 18 22 22 C 1.52967 * 111.26721 * 178.22971 * 20 19 18 23 23 O 1.45611 * 107.76090 * 181.37071 * 22 20 19 24 24 C 1.34154 * 117.92018 * 316.23635 * 23 22 20 25 25 O 1.21506 * 118.24637 * 194.89026 * 24 23 22 26 26 N 1.34110 * 123.52759 * 15.17680 * 24 23 22 27 27 C 1.45604 * 121.79197 * 355.48089 * 26 24 23 28 28 H 1.09009 * 109.00813 * 264.80369 * 27 26 24 29 29 C 1.47173 * 120.78408 * 355.17419 * 17 15 14 30 30 H 1.09007 * 109.46870 * 300.00407 * 1 2 3 31 31 H 1.09002 * 109.47345 * 59.99619 * 1 2 3 32 32 H 1.08993 * 109.47220 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47207 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47137 * 300.00090 * 3 2 1 35 35 H 1.09004 * 109.47000 * 59.99745 * 3 2 1 36 36 H 1.09003 * 109.47586 * 180.02562 * 4 2 1 37 37 H 1.09002 * 109.46734 * 300.00242 * 4 2 1 38 38 H 0.97003 * 119.99746 * 179.97438 * 8 7 5 39 39 H 1.09000 * 109.47442 * 180.02562 * 13 2 1 40 40 H 1.09006 * 109.47274 * 60.00241 * 13 2 1 41 41 H 0.97004 * 119.99782 * 359.97438 * 14 13 2 42 42 H 1.08998 * 109.48073 * 8.14814 * 18 17 15 43 43 H 1.08997 * 109.49381 * 248.11211 * 18 17 15 44 44 H 1.09000 * 109.61477 * 293.84997 * 19 18 17 45 45 H 1.08996 * 109.75809 * 173.40492 * 19 18 17 46 46 H 1.09004 * 109.80645 * 300.94216 * 22 20 19 47 47 H 1.09001 * 109.80186 * 61.80540 * 22 20 19 48 48 H 0.96996 * 119.10532 * 175.76610 * 26 24 23 49 49 H 1.08994 * 110.20977 * 113.59423 * 29 17 15 50 50 H 1.09000 * 109.29601 * 352.83235 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6257 -1.5521 -3.8525 9 14 1.2483 0.3986 -5.2572 10 1 1.7444 1.7983 -5.2573 11 1 1.7422 -0.3022 -6.4696 12 1 -0.2367 0.3998 -5.2571 13 6 2.0399 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4455 15 6 1.8768 -0.4912 3.6696 16 8 2.6481 -1.4243 3.7829 17 7 1.3471 0.0824 4.7681 18 6 1.6051 -0.4840 6.0979 19 6 2.1192 0.6200 7.0313 20 6 1.1292 1.7826 7.0025 21 1 0.1411 1.4244 7.2918 22 6 1.5619 2.9035 7.9491 23 8 0.5534 3.9519 7.8865 24 6 0.0848 4.3015 6.6791 25 8 -0.5373 5.3408 6.5825 26 7 0.2612 3.5628 5.5738 27 6 1.0697 2.3519 5.5814 28 1 2.0803 2.5977 5.2552 29 6 0.4959 1.2778 4.6576 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1300 -0.7217 -1.2489 37 1 1.6766 -1.7489 -1.2491 38 1 2.8594 -1.8840 -4.7335 39 1 3.1299 -0.7208 1.2496 40 1 1.6766 -1.7489 1.2494 41 1 0.9943 0.7584 2.3564 42 1 2.3548 -1.2711 6.0185 43 1 0.6821 -0.9004 6.5012 44 1 3.0959 0.9627 6.6897 45 1 2.2015 0.2346 8.0475 46 1 1.6335 2.5202 8.9671 47 1 2.5272 3.3004 7.6346 48 1 -0.1579 3.8451 4.7458 49 1 -0.5254 1.0418 4.9563 50 1 0.5065 1.6336 3.6273 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001427665714.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:29 Heat of formation + Delta-G solvation = -112.199520 kcal Electronic energy + Delta-G solvation = -30752.690971 eV Core-core repulsion = 26586.748944 eV Total energy + Delta-G solvation = -4165.942027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.79499 -40.36993 -38.44390 -37.40752 -37.01116 -35.06985 -34.12652 -33.19025 -32.04782 -30.30881 -28.39099 -27.13246 -26.59016 -26.17875 -24.62916 -23.90081 -23.14167 -22.17710 -20.56708 -19.92787 -19.19753 -18.59980 -17.84161 -17.51986 -16.64764 -16.46810 -16.22061 -15.87238 -15.56057 -15.19925 -14.86373 -14.69478 -14.54551 -14.31322 -14.21120 -13.91099 -13.52520 -13.32431 -13.09307 -12.94202 -12.78841 -12.32100 -12.26746 -12.09682 -12.01452 -11.59381 -11.46548 -11.22755 -11.08164 -11.05439 -10.91324 -10.77175 -10.68590 -10.46083 -10.31477 -10.16188 -9.94015 -9.83810 -9.26650 -9.14892 -8.98754 -8.66415 -8.39222 -6.03453 -4.05119 2.08499 2.26561 2.51990 2.96733 3.14120 3.29424 3.35243 3.36204 3.60679 3.75636 3.85461 4.08704 4.23646 4.41581 4.43151 4.51497 4.70182 4.78413 4.82158 4.85965 5.10878 5.16663 5.23934 5.31937 5.39055 5.40251 5.49321 5.56319 5.63717 5.66613 6.05234 6.08034 6.15670 6.21112 6.30273 6.32718 6.49195 6.55908 6.66509 6.76395 6.99412 7.00886 7.06643 7.16858 7.59354 7.68241 7.71276 7.89042 7.94893 8.35914 8.55747 8.99373 9.58248 11.07892 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.002434 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.747444 B =11501.051257 C =12780.351029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.037 3.963 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.145 3.855 14 N -0.736 5.736 15 C 0.706 3.294 16 O -0.585 6.585 17 N -0.632 5.632 18 C 0.127 3.873 19 C -0.122 4.122 20 C -0.140 4.140 21 H 0.097 0.903 22 C 0.067 3.933 23 O -0.342 6.342 24 C 0.661 3.339 25 O -0.532 6.532 26 N -0.724 5.724 27 C 0.120 3.880 28 H 0.086 0.914 29 C 0.110 3.890 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.393 0.607 42 H 0.103 0.897 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.119 0.881 47 H 0.081 0.919 48 H 0.422 0.578 49 H 0.081 0.919 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.886 5.693 24.189 25.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.022 3.978 14 N -0.392 5.392 15 C 0.407 3.593 16 O -0.462 6.462 17 N -0.371 5.371 18 C 0.004 3.996 19 C -0.161 4.161 20 C -0.159 4.159 21 H 0.116 0.884 22 C -0.007 4.007 23 O -0.253 6.253 24 C 0.413 3.587 25 O -0.417 6.417 26 N -0.392 5.392 27 C 0.013 3.987 28 H 0.104 0.896 29 C -0.016 4.016 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.230 0.770 42 H 0.121 0.879 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.109 0.891 46 H 0.137 0.863 47 H 0.099 0.901 48 H 0.261 0.739 49 H 0.099 0.901 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.479 5.401 24.513 25.223 hybrid contribution -0.635 0.737 -1.471 1.763 sum -3.113 6.138 23.042 24.048 Atomic orbital electron populations 1.21753 0.95282 1.01195 1.00080 1.20921 0.95451 0.95863 0.95062 1.21752 1.00611 0.95873 1.00050 1.19081 0.96398 0.95233 0.89359 1.21129 1.31359 1.12103 0.90512 0.92324 1.25008 0.95280 0.95065 0.99082 1.69954 1.36848 1.22931 1.23599 0.86713 0.79146 0.79776 0.82669 1.20317 1.21382 1.20325 1.21546 0.98877 0.95615 0.81804 1.45581 1.56041 1.33007 1.04616 1.15875 0.80595 0.82350 0.80447 1.90927 1.38643 1.31279 1.85366 1.47172 1.53702 1.29914 1.06297 1.21463 1.01926 0.95909 0.80343 1.21875 0.98548 0.94488 1.01206 1.22110 1.02765 0.96642 0.94392 0.88450 1.23525 0.89665 0.85281 1.02253 1.86681 1.55701 1.55166 1.27743 1.17898 0.78938 0.82647 0.79193 1.91060 1.44593 1.22914 1.83138 1.45292 1.55376 1.26174 1.12364 1.21418 0.95844 0.84916 0.96517 0.89574 1.21708 0.94909 0.84886 1.00051 0.95538 0.91378 0.93295 0.93289 0.91370 0.95592 0.96288 0.96295 0.92946 0.91798 0.91913 0.77015 0.87876 0.91474 0.90338 0.89139 0.86344 0.90086 0.73912 0.90060 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.05 37.15 0.30 -1.77 16 2 C -0.07 -1.29 0.54 -154.51 -0.08 -1.38 16 3 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 4 C 0.04 0.87 4.04 -27.89 -0.11 0.76 16 5 C -0.51 -13.23 7.65 -34.44 -0.26 -13.49 16 6 H 0.06 1.45 5.68 -52.49 -0.30 1.15 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 9 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.14 2.40 4.57 -4.04 -0.02 2.38 16 14 N -0.74 -9.65 4.87 -65.23 -0.32 -9.97 16 15 C 0.71 9.49 8.29 -86.92 -0.72 8.77 16 16 O -0.58 -10.27 15.74 5.29 0.08 -10.18 16 17 N -0.63 -5.62 2.98 -178.45 -0.53 -6.15 16 18 C 0.13 0.87 6.40 -3.64 -0.02 0.85 16 19 C -0.12 -0.49 5.50 -26.64 -0.15 -0.64 16 20 C -0.14 -0.61 2.06 -90.67 -0.19 -0.80 16 21 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 22 C 0.07 0.31 6.64 37.14 0.25 0.55 16 23 O -0.34 -3.12 10.46 -39.14 -0.41 -3.53 16 24 C 0.66 6.84 8.54 53.76 0.46 7.29 16 25 O -0.53 -7.78 17.96 -19.42 -0.35 -8.13 16 26 N -0.72 -4.99 5.31 -59.58 -0.32 -5.31 16 27 C 0.12 0.67 2.97 -68.39 -0.20 0.46 16 28 H 0.09 0.52 8.13 -51.92 -0.42 0.10 16 29 C 0.11 0.68 6.06 -3.76 -0.02 0.66 16 30 H 0.03 0.34 6.86 -51.92 -0.36 -0.01 16 31 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 35 H 0.03 0.33 6.86 -51.93 -0.36 -0.02 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.39 4.26 3.66 -40.82 -0.15 4.11 16 42 H 0.10 0.92 6.97 -51.93 -0.36 0.56 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 46 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.42 2.50 8.78 -40.82 -0.36 2.14 16 49 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.09 0.53 5.65 -51.93 -0.29 0.23 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -34.38 386.25 -8.79 -43.18 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.91 Total: 0.33 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.57 Total: 3.35 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.43 Total: -46.64 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.68 Total: -21.84 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.38 -8.79 -43.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001427665714.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.024 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds