Wall clock time and date at job start Sat Apr 11 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47379 * 2 1 4 4 C 1.52994 * 109.47401 * 239.99840 * 2 1 3 5 5 C 1.50702 * 109.47167 * 59.99872 * 4 2 1 6 6 H 1.07996 * 119.99846 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00114 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00000 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00260 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46805 * 59.99963 * 9 7 5 11 11 H 1.48493 * 109.47416 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46923 * 300.00582 * 9 7 5 13 13 C 1.53001 * 109.47034 * 119.99564 * 2 1 3 14 14 N 1.46496 * 109.47629 * 299.99988 * 13 2 1 15 15 C 1.34772 * 120.00546 * 179.97438 * 14 13 2 16 16 O 1.21589 * 119.99752 * 4.98992 * 15 14 13 17 17 N 1.34775 * 120.00490 * 184.98236 * 15 14 13 18 18 C 1.46815 * 120.33342 * 174.78061 * 17 15 14 19 19 C 1.53444 * 109.41057 * 128.12481 * 18 17 15 20 20 C 1.52726 * 108.60218 * 53.58145 * 19 18 17 21 21 H 1.09009 * 109.41275 * 57.16356 * 20 19 18 22 22 C 1.52967 * 111.26721 * 178.22971 * 20 19 18 23 23 O 1.45611 * 107.76090 * 181.37071 * 22 20 19 24 24 C 1.34154 * 117.92018 * 316.23635 * 23 22 20 25 25 O 1.21506 * 118.24637 * 194.89026 * 24 23 22 26 26 N 1.34110 * 123.52759 * 15.17680 * 24 23 22 27 27 C 1.45604 * 121.79197 * 355.48089 * 26 24 23 28 28 H 1.09009 * 109.00813 * 264.80369 * 27 26 24 29 29 C 1.47173 * 120.78408 * 355.17419 * 17 15 14 30 30 H 1.09007 * 109.46870 * 300.00407 * 1 2 3 31 31 H 1.09002 * 109.47345 * 59.99619 * 1 2 3 32 32 H 1.08993 * 109.47220 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47207 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47137 * 300.00090 * 3 2 1 35 35 H 1.09004 * 109.47000 * 59.99745 * 3 2 1 36 36 H 1.09003 * 109.47586 * 180.02562 * 4 2 1 37 37 H 1.09002 * 109.46734 * 300.00242 * 4 2 1 38 38 H 0.97003 * 119.99746 * 179.97438 * 8 7 5 39 39 H 1.09000 * 109.47442 * 180.02562 * 13 2 1 40 40 H 1.09006 * 109.47274 * 60.00241 * 13 2 1 41 41 H 0.97004 * 119.99782 * 359.97438 * 14 13 2 42 42 H 1.08998 * 109.48073 * 8.14814 * 18 17 15 43 43 H 1.08997 * 109.49381 * 248.11211 * 18 17 15 44 44 H 1.09000 * 109.61477 * 293.84997 * 19 18 17 45 45 H 1.08996 * 109.75809 * 173.40492 * 19 18 17 46 46 H 1.09004 * 109.80645 * 300.94216 * 22 20 19 47 47 H 1.09001 * 109.80186 * 61.80540 * 22 20 19 48 48 H 0.96996 * 119.10532 * 175.76610 * 26 24 23 49 49 H 1.08994 * 110.20977 * 113.59423 * 29 17 15 50 50 H 1.09000 * 109.29601 * 352.83235 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.5377 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8704 -0.4823 -3.7319 8 7 2.6257 -1.5521 -3.8525 9 14 1.2483 0.3986 -5.2572 10 1 1.7444 1.7983 -5.2573 11 1 1.7422 -0.3022 -6.4696 12 1 -0.2367 0.3998 -5.2571 13 6 2.0399 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4455 15 6 1.8768 -0.4912 3.6696 16 8 2.6481 -1.4243 3.7829 17 7 1.3471 0.0824 4.7681 18 6 1.6051 -0.4840 6.0979 19 6 2.1192 0.6200 7.0313 20 6 1.1292 1.7826 7.0025 21 1 0.1411 1.4244 7.2918 22 6 1.5619 2.9035 7.9491 23 8 0.5534 3.9519 7.8865 24 6 0.0848 4.3015 6.6791 25 8 -0.5373 5.3408 6.5825 26 7 0.2612 3.5628 5.5738 27 6 1.0697 2.3519 5.5814 28 1 2.0803 2.5977 5.2552 29 6 0.4959 1.2778 4.6576 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1300 -0.7217 -1.2489 37 1 1.6766 -1.7489 -1.2491 38 1 2.8594 -1.8840 -4.7335 39 1 3.1299 -0.7208 1.2496 40 1 1.6766 -1.7489 1.2494 41 1 0.9943 0.7584 2.3564 42 1 2.3548 -1.2711 6.0185 43 1 0.6821 -0.9004 6.5012 44 1 3.0959 0.9627 6.6897 45 1 2.2015 0.2346 8.0475 46 1 1.6335 2.5202 8.9671 47 1 2.5272 3.3004 7.6346 48 1 -0.1579 3.8451 4.7458 49 1 -0.5254 1.0418 4.9563 50 1 0.5065 1.6336 3.6273 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001427665714.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:28 Heat of formation + Delta-G solvation = -137.106854 kcal Electronic energy + Delta-G solvation = -30753.771034 eV Core-core repulsion = 26586.748944 eV Total energy + Delta-G solvation = -4167.022090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.41925 -41.32222 -39.36136 -38.57130 -37.87081 -35.78706 -35.38423 -34.37673 -33.49120 -30.89958 -29.28159 -28.76973 -27.95170 -27.39548 -25.39422 -24.71131 -24.43981 -23.06039 -21.06060 -20.92376 -20.11618 -19.45816 -18.81671 -18.40155 -18.33759 -17.33163 -17.22341 -16.72892 -16.50236 -16.21970 -15.83910 -15.62391 -15.49314 -15.22411 -15.20914 -14.89283 -14.61363 -14.39624 -14.25107 -13.95161 -13.86484 -13.65927 -13.44676 -12.83854 -12.82142 -12.74790 -12.62666 -12.56091 -12.31618 -12.21694 -12.14382 -12.01845 -11.95651 -11.60549 -11.52287 -11.48031 -11.23628 -10.96154 -10.84313 -10.49222 -10.47720 -10.20652 -9.56475 -8.12756 -6.20291 1.39467 1.43793 1.45077 1.52233 1.53698 1.76855 2.09704 2.39913 2.45614 2.95389 3.19808 3.21901 3.34864 3.64589 3.80493 3.97783 4.04745 4.05722 4.10997 4.22682 4.28914 4.37213 4.39121 4.53396 4.68140 4.69919 4.74485 4.75869 4.79071 4.86775 4.90126 4.97099 4.98543 5.12986 5.13798 5.25658 5.39824 5.46963 5.50690 5.52449 5.55963 5.60113 5.73161 5.82453 5.84002 5.91712 6.32160 6.54137 6.90800 6.95640 6.99898 7.47437 7.52593 8.99503 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.002434 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.747444 B =11501.051257 C =12780.351029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.073 0.927 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.267 1.267 11 H -0.292 1.292 12 H -0.267 1.267 13 C 0.161 3.839 14 N -0.725 5.725 15 C 0.703 3.297 16 O -0.631 6.631 17 N -0.621 5.621 18 C 0.120 3.880 19 C -0.109 4.109 20 C -0.133 4.133 21 H 0.104 0.896 22 C 0.063 3.937 23 O -0.358 6.358 24 C 0.661 3.339 25 O -0.586 6.586 26 N -0.707 5.707 27 C 0.122 3.878 28 H 0.087 0.913 29 C 0.108 3.892 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.068 0.932 36 H -0.014 1.014 37 H -0.014 1.014 38 H 0.259 0.741 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.406 0.594 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.119 0.881 46 H 0.147 0.853 47 H 0.090 0.910 48 H 0.427 0.573 49 H 0.099 0.901 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.233 7.324 26.035 27.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.781 3.219 10 H -0.192 1.192 11 H -0.218 1.218 12 H -0.192 1.192 13 C 0.036 3.964 14 N -0.383 5.383 15 C 0.404 3.596 16 O -0.512 6.512 17 N -0.359 5.359 18 C -0.002 4.002 19 C -0.147 4.147 20 C -0.152 4.152 21 H 0.122 0.878 22 C -0.010 4.010 23 O -0.269 6.269 24 C 0.415 3.585 25 O -0.474 6.474 26 N -0.375 5.375 27 C 0.016 3.984 28 H 0.105 0.895 29 C -0.016 4.016 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.004 0.996 37 H 0.005 0.995 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.247 0.753 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.092 0.908 45 H 0.137 0.863 46 H 0.164 0.836 47 H 0.108 0.892 48 H 0.267 0.733 49 H 0.117 0.883 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.850 7.058 26.399 27.596 hybrid contribution -0.167 0.151 -1.945 1.958 sum -4.017 7.209 24.454 25.808 Atomic orbital electron populations 1.21682 0.93543 1.00987 1.01551 1.20703 0.96704 0.96266 0.92752 1.21682 0.99917 0.94635 1.01523 1.18966 0.94313 0.94236 0.92270 1.21565 1.30416 1.12065 0.91061 0.90909 1.25924 0.95699 0.95853 1.02652 1.70114 1.38808 1.24923 1.24107 0.85635 0.78969 0.78773 0.78475 1.19192 1.21833 1.19169 1.21058 0.97571 0.94917 0.82849 1.45219 1.56223 1.33237 1.03669 1.16013 0.80336 0.82009 0.81195 1.90904 1.40761 1.33455 1.86110 1.47155 1.52901 1.30105 1.05707 1.21678 1.02346 0.96504 0.79722 1.21789 0.97836 0.93220 1.01902 1.22073 1.03239 0.96518 0.93392 0.87771 1.23865 0.88862 0.84257 1.04014 1.86648 1.56598 1.56524 1.27118 1.17980 0.78428 0.82275 0.79840 1.91019 1.46986 1.25286 1.84134 1.45160 1.54702 1.25949 1.11694 1.21451 0.95418 0.84134 0.97420 0.89467 1.21879 0.95166 0.83809 1.00760 0.91226 0.92635 0.94415 0.94472 0.92624 0.91282 0.99552 0.99514 0.93210 0.93814 0.93764 0.75349 0.90193 0.89655 0.90773 0.86303 0.83568 0.89218 0.73302 0.88294 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.75 8.05 71.98 0.58 -3.17 16 2 C -0.06 -2.26 0.54 -52.18 -0.03 -2.29 16 3 C -0.12 -3.76 8.05 71.98 0.58 -3.18 16 4 C 0.04 1.96 4.04 29.85 0.12 2.08 16 5 C -0.51 -26.78 7.65 25.60 0.20 -26.59 16 6 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 7 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 8 N -0.94 -56.34 13.29 21.45 0.28 -56.05 16 9 Si 0.96 42.88 29.54 68.60 2.03 44.91 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 C 0.16 5.39 4.57 86.38 0.39 5.79 16 14 N -0.73 -17.81 4.87 -478.54 -2.33 -20.14 16 15 C 0.70 18.02 8.29 179.06 1.49 19.50 16 16 O -0.63 -22.32 15.74 -4.00 -0.06 -22.39 16 17 N -0.62 -9.48 2.98 -836.76 -2.49 -11.97 16 18 C 0.12 1.34 6.40 86.47 0.55 1.89 16 19 C -0.11 -0.49 5.50 30.65 0.17 -0.32 16 20 C -0.13 -0.67 2.06 -10.83 -0.02 -0.69 16 21 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 22 C 0.06 0.36 6.64 71.97 0.48 0.84 16 23 O -0.36 -5.75 10.46 -50.61 -0.53 -6.28 16 24 C 0.66 12.61 8.54 129.90 1.11 13.72 16 25 O -0.59 -16.87 17.96 19.96 0.36 -16.52 16 26 N -0.71 -7.93 5.31 -573.82 -3.05 -10.97 16 27 C 0.12 0.95 2.97 45.18 0.13 1.08 16 28 H 0.09 0.75 8.13 -2.38 -0.02 0.73 16 29 C 0.11 0.95 6.06 86.20 0.52 1.47 16 30 H 0.07 1.55 6.86 -2.38 -0.02 1.54 16 31 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.89 6.62 -2.39 -0.02 1.87 16 35 H 0.07 1.55 6.86 -2.38 -0.02 1.53 16 36 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 37 H -0.01 -0.75 8.14 -2.39 -0.02 -0.76 16 38 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.41 7.42 3.66 -92.70 -0.34 7.08 16 42 H 0.08 1.34 6.97 -2.39 -0.02 1.32 16 43 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 45 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.43 3.95 8.78 -92.71 -0.81 3.14 16 49 H 0.10 0.63 8.14 -2.39 -0.02 0.62 16 50 H 0.09 0.73 5.65 -2.39 -0.01 0.71 16 Total: -1.00 -79.73 386.25 0.75 -78.98 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -0.19 Total: 10.07 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 6.73 Total: 10.36 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -7.58 Total: -99.14 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -0.23 Total: -45.18 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -79.73 0.75 -78.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001427665714.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.130 kcal (2) G-P(sol) polarization free energy of solvation -79.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds