Wall clock time and date at job start Sat Apr 11 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47272 * 2 1 4 4 C 1.50703 * 119.99936 * 90.85614 * 3 2 1 5 5 C 1.32991 * 120.00125 * 270.86151 * 3 2 1 6 6 C 1.47103 * 119.99989 * 8.67103 * 5 3 2 7 7 O 1.21619 * 120.00045 * 5.35968 * 6 5 3 8 8 N 1.34774 * 120.00142 * 185.36808 * 6 5 3 9 9 C 1.46506 * 119.99932 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46667 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.51029 * 59.91585 * 10 9 8 12 12 C 1.53104 * 109.50292 * 179.97438 * 10 9 8 13 13 N 1.47008 * 109.25781 * 176.78302 * 12 10 9 14 14 C 1.46895 * 111.00185 * 177.60667 * 13 12 10 15 15 C 1.50699 * 109.47173 * 291.35093 * 14 13 12 16 16 O 1.21290 * 119.99999 * 1.25191 * 15 14 13 17 17 N 1.34783 * 119.99837 * 181.25973 * 15 14 13 18 18 C 1.37102 * 119.99649 * 179.97438 * 17 15 14 19 19 H 1.08003 * 120.00196 * 359.97438 * 18 17 15 20 20 C 1.38943 * 119.99887 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99898 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00096 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47178 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47319 * 119.99298 * 22 20 18 25 25 H 1.48496 * 109.47058 * 239.99785 * 22 20 18 26 26 C 1.47016 * 110.75199 * 301.38287 * 13 12 10 27 27 C 1.53097 * 109.25877 * 58.61604 * 26 13 12 28 28 O 1.43013 * 109.50690 * 299.78041 * 10 9 8 29 29 H 1.09000 * 109.47575 * 300.00101 * 1 2 3 30 30 H 1.09000 * 109.47254 * 60.00040 * 1 2 3 31 31 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47071 * 239.99746 * 2 1 3 33 33 H 1.09000 * 109.47254 * 119.99960 * 2 1 3 34 34 H 1.09002 * 109.47073 * 270.00141 * 4 3 2 35 35 H 1.08993 * 109.47428 * 30.00271 * 4 3 2 36 36 H 1.08999 * 109.46651 * 150.00523 * 4 3 2 37 37 H 1.08004 * 120.00166 * 188.67632 * 5 3 2 38 38 H 0.97002 * 119.99921 * 359.97438 * 8 6 5 39 39 H 1.08993 * 109.47153 * 59.99797 * 9 8 6 40 40 H 1.09000 * 109.46777 * 299.99526 * 9 8 6 41 41 H 1.09001 * 109.50394 * 296.71994 * 12 10 9 42 42 H 1.09003 * 109.50395 * 56.84671 * 12 10 9 43 43 H 1.09004 * 109.47385 * 51.34879 * 14 13 12 44 44 H 1.09004 * 109.47653 * 171.34695 * 14 13 12 45 45 H 0.96994 * 120.00283 * 359.97438 * 17 15 14 46 46 H 0.97004 * 119.99850 * 180.02562 * 21 20 18 47 47 H 1.09008 * 109.50760 * 178.55259 * 26 13 12 48 48 H 1.08999 * 109.50714 * 298.63894 * 26 13 12 49 49 H 1.09008 * 109.50391 * 63.08457 * 27 26 13 50 50 H 1.08996 * 109.51118 * 183.21293 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3019 2.1247 1.3050 5 6 2.2377 2.0535 -1.1516 6 6 1.7977 1.4423 -2.4152 7 8 1.1605 0.4066 -2.4003 8 7 2.1009 2.0301 -3.5896 9 6 1.6622 1.4217 -4.8480 10 6 2.1330 2.2825 -6.0220 11 1 3.2208 2.3507 -6.0101 12 6 1.6755 1.6471 -7.3377 13 7 2.0634 2.5174 -8.4571 14 6 1.6924 1.9158 -9.7448 15 6 2.5468 0.7001 -9.9961 16 8 3.3670 0.3545 -9.1721 17 7 2.3997 -0.0029 -11.1366 18 6 3.1775 -1.1086 -11.3654 19 1 3.9083 -1.4159 -10.6320 20 6 3.0262 -1.8331 -12.5413 21 7 2.1373 -1.4588 -13.4339 22 14 4.0864 -3.3391 -12.8534 23 1 5.0025 -3.5466 -11.7032 24 1 3.2166 -4.5318 -13.0153 25 1 4.8831 -3.1359 -14.0899 26 6 1.4681 3.8534 -8.3088 27 6 1.9276 4.4667 -6.9834 28 8 1.5703 3.5925 -5.9095 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.3981 2.6369 1.6350 35 1 2.6007 1.3943 2.0568 36 1 3.1019 2.8520 1.1669 37 1 2.7276 3.0160 -1.1591 38 1 2.6089 2.8563 -3.6015 39 1 0.5743 1.3555 -4.8598 40 1 2.0880 0.4222 -4.9362 41 1 2.1479 0.6717 -7.4543 42 1 0.5920 1.5286 -7.3272 43 1 0.6426 1.6232 -9.7201 44 1 1.8486 2.6411 -10.5433 45 1 1.7436 0.2733 -11.7954 46 1 2.0314 -1.9648 -14.2547 47 1 1.7890 4.4887 -9.1345 48 1 0.3813 3.7703 -8.3146 49 1 3.0094 4.5995 -6.9996 50 1 1.4437 5.4332 -6.8424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482187664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:39 Heat of formation + Delta-G solvation = -97.491567 kcal Electronic energy + Delta-G solvation = -29466.078673 eV Core-core repulsion = 25300.774430 eV Total energy + Delta-G solvation = -4165.304243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.17966 -39.57158 -38.07752 -36.43447 -35.38723 -34.65309 -33.83044 -31.88350 -31.26356 -30.87597 -29.20365 -28.47615 -26.53212 -25.16388 -23.86918 -23.81924 -22.44498 -21.15359 -20.36838 -19.25334 -18.83129 -17.88529 -17.16325 -16.63797 -16.21956 -16.16148 -15.72360 -15.20113 -14.98974 -14.87696 -14.73971 -14.68563 -14.11721 -14.08307 -13.87407 -13.64782 -13.41732 -13.28928 -13.07165 -12.98890 -12.68049 -12.54537 -12.33124 -12.10394 -11.94786 -11.71404 -11.53048 -11.28890 -11.23483 -11.19727 -10.98025 -10.90199 -10.52226 -10.35388 -10.24358 -9.76923 -9.57388 -9.50539 -9.38213 -8.95027 -8.51437 -8.02360 -7.94156 -6.43686 -3.84544 1.18068 3.12118 3.15273 3.21763 3.26145 3.33178 3.63523 3.83502 3.90189 4.20621 4.49720 4.53902 4.78005 4.89960 4.97232 5.01730 5.06738 5.13924 5.15551 5.17352 5.21979 5.23619 5.28852 5.36425 5.41804 5.48025 5.51552 5.56841 5.60047 5.71560 5.77736 5.79232 5.82636 5.88011 6.01212 6.05914 6.17298 6.19368 6.23404 6.25225 6.41004 6.46163 7.05344 7.10672 7.24434 7.50604 7.53720 8.04160 8.22995 8.59025 9.16029 9.51856 10.03051 10.74009 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013387 B = 0.002132 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.093955 B =13129.779420 C =14688.483909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.101 4.101 3 C -0.030 4.030 4 C -0.126 4.126 5 C -0.231 4.231 6 C 0.541 3.459 7 O -0.538 6.538 8 N -0.719 5.719 9 C 0.132 3.868 10 C 0.086 3.914 11 H 0.076 0.924 12 C 0.027 3.973 13 N -0.513 5.513 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.578 6.578 17 N -0.563 5.563 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.282 1.282 26 C 0.015 3.985 27 C 0.068 3.932 28 O -0.385 6.385 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.403 0.597 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.036 0.964 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.085 0.915 48 H 0.040 0.960 49 H 0.060 0.940 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 12.316 21.737 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 C -0.032 4.032 4 C -0.183 4.183 5 C -0.252 4.252 6 C 0.331 3.669 7 O -0.418 6.418 8 N -0.370 5.370 9 C 0.008 3.992 10 C 0.027 3.973 11 H 0.094 0.906 12 C -0.101 4.101 13 N -0.238 5.238 14 C -0.085 4.085 15 C 0.229 3.771 16 O -0.463 6.463 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.208 1.208 26 C -0.114 4.114 27 C -0.009 4.009 28 O -0.304 6.304 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.143 0.857 38 H 0.237 0.763 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.108 0.892 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.058 0.942 49 H 0.078 0.922 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.417 11.360 22.241 25.091 hybrid contribution -0.388 -0.127 -1.216 1.283 sum -2.804 11.233 21.025 24.002 Atomic orbital electron populations 1.21560 0.94190 1.01743 1.01482 1.20945 0.97228 0.92346 1.03233 1.22567 0.90540 0.95704 0.94378 1.21004 1.02412 1.00403 0.94440 1.22360 1.08321 1.02378 0.92127 1.18552 0.79947 0.84276 0.84097 1.90753 1.40178 1.23440 1.87400 1.45768 1.57402 1.28301 1.05504 1.21325 1.00710 0.96119 0.81089 1.22372 0.98259 0.82855 0.93766 0.90575 1.22784 0.98564 0.99334 0.89426 1.61752 1.58751 1.01713 1.01542 1.21877 0.97651 0.97319 0.91656 1.19704 0.87370 0.85936 0.84137 1.90484 1.38704 1.70906 1.46172 1.41875 1.35499 1.25437 1.17176 1.19745 1.16570 1.02716 1.03720 0.87823 1.25271 0.97546 0.99624 0.95554 1.69622 1.34360 1.40763 1.09516 0.85799 0.79485 0.80622 0.78442 1.19203 1.20750 1.20757 1.22831 0.97584 0.91861 0.99101 1.22611 1.00243 0.92655 0.85346 1.87934 1.73874 1.22502 1.46109 0.93977 0.91406 0.92779 0.88281 0.92296 0.90274 0.91162 0.91192 0.85746 0.76268 0.90822 0.89526 0.86858 0.94583 0.93205 0.89172 0.77494 0.91912 0.89668 0.94210 0.92207 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.38 37.16 0.35 -0.99 16 2 C -0.10 -1.00 5.33 -27.88 -0.15 -1.14 16 3 C -0.03 -0.26 5.36 -101.17 -0.54 -0.80 16 4 C -0.13 -0.72 10.05 36.01 0.36 -0.36 16 5 C -0.23 -2.15 9.63 -37.81 -0.36 -2.51 16 6 C 0.54 6.59 7.61 -12.66 -0.10 6.49 16 7 O -0.54 -8.03 11.32 5.26 0.06 -7.97 16 8 N -0.72 -8.06 5.45 -61.49 -0.33 -8.39 16 9 C 0.13 1.68 5.37 -4.04 -0.02 1.66 16 10 C 0.09 1.14 2.89 -26.68 -0.08 1.06 16 11 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 12 C 0.03 0.44 4.58 -3.71 -0.02 0.42 16 13 N -0.51 -8.31 4.43 -235.75 -1.04 -9.36 16 14 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 15 C 0.44 10.25 7.52 -10.98 -0.08 10.17 16 16 O -0.58 -15.17 14.06 5.55 0.08 -15.09 16 17 N -0.56 -14.09 5.29 -10.96 -0.06 -14.15 16 18 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 19 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 22 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.01 0.18 5.64 -3.71 -0.02 0.16 16 27 C 0.07 0.74 7.01 37.21 0.26 1.00 16 28 O -0.39 -4.82 10.23 -35.23 -0.36 -5.18 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.83 6.49 -51.93 -0.34 0.49 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 1.23 5.87 -51.93 -0.30 0.92 16 33 H 0.06 0.48 8.03 -51.93 -0.42 0.07 16 34 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.35 8.03 -51.93 -0.42 -0.07 16 36 H 0.07 0.33 8.05 -51.93 -0.42 -0.09 16 37 H 0.12 0.86 8.04 -52.48 -0.42 0.44 16 38 H 0.40 3.72 8.34 -40.82 -0.34 3.38 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.11 2.16 6.05 -51.93 -0.31 1.84 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 44 H 0.09 1.41 8.00 -51.93 -0.42 0.99 16 45 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.08 0.93 8.07 -51.92 -0.42 0.51 16 48 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 50 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -32.33 403.50 -8.83 -41.16 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -8.29 Total: 12.55 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -0.67 Total: 8.05 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.71 Total: -55.57 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: -0.22 Total: -28.25 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.33 -8.83 -41.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482187664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.336 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds