Wall clock time and date at job start Sat Apr 11 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47272 * 2 1 4 4 C 1.50703 * 119.99936 * 90.85614 * 3 2 1 5 5 C 1.32991 * 120.00125 * 270.86151 * 3 2 1 6 6 C 1.47103 * 119.99989 * 8.67103 * 5 3 2 7 7 O 1.21619 * 120.00045 * 5.35968 * 6 5 3 8 8 N 1.34774 * 120.00142 * 185.36808 * 6 5 3 9 9 C 1.46506 * 119.99932 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46667 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.51029 * 59.91585 * 10 9 8 12 12 C 1.53104 * 109.50292 * 179.97438 * 10 9 8 13 13 N 1.47008 * 109.25781 * 176.78302 * 12 10 9 14 14 C 1.46895 * 111.00185 * 177.60667 * 13 12 10 15 15 C 1.50699 * 109.47173 * 291.35093 * 14 13 12 16 16 O 1.21290 * 119.99999 * 1.25191 * 15 14 13 17 17 N 1.34783 * 119.99837 * 181.25973 * 15 14 13 18 18 C 1.37102 * 119.99649 * 179.97438 * 17 15 14 19 19 H 1.08003 * 120.00196 * 359.97438 * 18 17 15 20 20 C 1.38943 * 119.99887 * 180.02562 * 18 17 15 21 21 N 1.31414 * 119.99898 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00096 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47178 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47319 * 119.99298 * 22 20 18 25 25 H 1.48496 * 109.47058 * 239.99785 * 22 20 18 26 26 C 1.47016 * 110.75199 * 301.38287 * 13 12 10 27 27 C 1.53097 * 109.25877 * 58.61604 * 26 13 12 28 28 O 1.43013 * 109.50690 * 299.78041 * 10 9 8 29 29 H 1.09000 * 109.47575 * 300.00101 * 1 2 3 30 30 H 1.09000 * 109.47254 * 60.00040 * 1 2 3 31 31 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47071 * 239.99746 * 2 1 3 33 33 H 1.09000 * 109.47254 * 119.99960 * 2 1 3 34 34 H 1.09002 * 109.47073 * 270.00141 * 4 3 2 35 35 H 1.08993 * 109.47428 * 30.00271 * 4 3 2 36 36 H 1.08999 * 109.46651 * 150.00523 * 4 3 2 37 37 H 1.08004 * 120.00166 * 188.67632 * 5 3 2 38 38 H 0.97002 * 119.99921 * 359.97438 * 8 6 5 39 39 H 1.08993 * 109.47153 * 59.99797 * 9 8 6 40 40 H 1.09000 * 109.46777 * 299.99526 * 9 8 6 41 41 H 1.09001 * 109.50394 * 296.71994 * 12 10 9 42 42 H 1.09003 * 109.50395 * 56.84671 * 12 10 9 43 43 H 1.09004 * 109.47385 * 51.34879 * 14 13 12 44 44 H 1.09004 * 109.47653 * 171.34695 * 14 13 12 45 45 H 0.96994 * 120.00283 * 359.97438 * 17 15 14 46 46 H 0.97004 * 119.99850 * 180.02562 * 21 20 18 47 47 H 1.09008 * 109.50760 * 178.55259 * 26 13 12 48 48 H 1.08999 * 109.50714 * 298.63894 * 26 13 12 49 49 H 1.09008 * 109.50391 * 63.08457 * 27 26 13 50 50 H 1.08996 * 109.51118 * 183.21293 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3019 2.1247 1.3050 5 6 2.2377 2.0535 -1.1516 6 6 1.7977 1.4423 -2.4152 7 8 1.1605 0.4066 -2.4003 8 7 2.1009 2.0301 -3.5896 9 6 1.6622 1.4217 -4.8480 10 6 2.1330 2.2825 -6.0220 11 1 3.2208 2.3507 -6.0101 12 6 1.6755 1.6471 -7.3377 13 7 2.0634 2.5174 -8.4571 14 6 1.6924 1.9158 -9.7448 15 6 2.5468 0.7001 -9.9961 16 8 3.3670 0.3545 -9.1721 17 7 2.3997 -0.0029 -11.1366 18 6 3.1775 -1.1086 -11.3654 19 1 3.9083 -1.4159 -10.6320 20 6 3.0262 -1.8331 -12.5413 21 7 2.1373 -1.4588 -13.4339 22 14 4.0864 -3.3391 -12.8534 23 1 5.0025 -3.5466 -11.7032 24 1 3.2166 -4.5318 -13.0153 25 1 4.8831 -3.1359 -14.0899 26 6 1.4681 3.8534 -8.3088 27 6 1.9276 4.4667 -6.9834 28 8 1.5703 3.5925 -5.9095 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.3981 2.6369 1.6350 35 1 2.6007 1.3943 2.0568 36 1 3.1019 2.8520 1.1669 37 1 2.7276 3.0160 -1.1591 38 1 2.6089 2.8563 -3.6015 39 1 0.5743 1.3555 -4.8598 40 1 2.0880 0.4222 -4.9362 41 1 2.1479 0.6717 -7.4543 42 1 0.5920 1.5286 -7.3272 43 1 0.6426 1.6232 -9.7201 44 1 1.8486 2.6411 -10.5433 45 1 1.7436 0.2733 -11.7954 46 1 2.0314 -1.9648 -14.2547 47 1 1.7890 4.4887 -9.1345 48 1 0.3813 3.7703 -8.3146 49 1 3.0094 4.5995 -6.9996 50 1 1.4437 5.4332 -6.8424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482187664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:38 Heat of formation + Delta-G solvation = -121.946942 kcal Electronic energy + Delta-G solvation = -29467.139137 eV Core-core repulsion = 25300.774430 eV Total energy + Delta-G solvation = -4166.364707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.23221 -40.70198 -39.75056 -37.27148 -36.64648 -35.85436 -35.57872 -33.30103 -32.85829 -31.66498 -30.44140 -29.27042 -27.75337 -26.69477 -25.28888 -24.62047 -23.53078 -22.10940 -21.47665 -21.03007 -19.90870 -19.64283 -18.04514 -17.89525 -17.56594 -17.21525 -16.96690 -16.59631 -16.30728 -15.98993 -15.89311 -15.82338 -15.61180 -15.30358 -15.16895 -14.65764 -14.62692 -14.42875 -13.94134 -13.87566 -13.68684 -13.59507 -13.50891 -13.21843 -13.12539 -13.00131 -12.86372 -12.80633 -12.42049 -12.38791 -12.24161 -12.12744 -11.95323 -11.74822 -11.59846 -11.45178 -10.83968 -10.55296 -10.24951 -10.20746 -10.01124 -9.81999 -9.33679 -8.47773 -5.96121 0.43509 1.35164 1.40621 1.54527 2.03285 2.16155 2.27865 2.33377 2.62982 2.70326 3.18809 3.31820 3.76044 3.84392 3.85722 3.90753 3.98100 4.02013 4.20845 4.25201 4.30035 4.34410 4.46185 4.48726 4.49033 4.54831 4.56347 4.62748 4.68292 4.71470 4.74506 4.85584 4.86141 4.90033 5.00726 5.02351 5.12251 5.22331 5.36758 5.40307 5.48125 5.57390 5.71098 5.76133 5.95242 6.05423 6.14318 6.59237 6.63699 7.12093 7.32270 7.55310 8.10816 8.69783 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013387 B = 0.002132 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.093955 B =13129.779420 C =14688.483909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 C -0.024 4.024 4 C -0.123 4.123 5 C -0.242 4.242 6 C 0.532 3.468 7 O -0.574 6.574 8 N -0.711 5.711 9 C 0.140 3.860 10 C 0.103 3.897 11 H 0.071 0.929 12 C 0.030 3.970 13 N -0.530 5.530 14 C 0.058 3.942 15 C 0.441 3.559 16 O -0.614 6.614 17 N -0.574 5.574 18 C -0.330 4.330 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.274 1.274 24 H -0.272 1.272 25 H -0.270 1.270 26 C 0.014 3.986 27 C 0.066 3.934 28 O -0.385 6.385 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.153 0.847 38 H 0.414 0.586 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.066 0.934 44 H 0.116 0.884 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.105 0.895 48 H 0.046 0.954 49 H 0.061 0.939 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 14.422 22.912 27.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.141 4.141 3 C -0.026 4.026 4 C -0.179 4.179 5 C -0.263 4.263 6 C 0.323 3.677 7 O -0.456 6.456 8 N -0.363 5.363 9 C 0.015 3.985 10 C 0.045 3.955 11 H 0.089 0.911 12 C -0.099 4.099 13 N -0.256 5.256 14 C -0.073 4.073 15 C 0.228 3.772 16 O -0.500 6.500 17 N -0.212 5.212 18 C -0.459 4.459 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.199 1.199 24 H -0.197 1.197 25 H -0.195 1.195 26 C -0.114 4.114 27 C -0.010 4.010 28 O -0.304 6.304 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.171 0.829 38 H 0.251 0.749 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.084 0.916 44 H 0.134 0.866 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.123 0.877 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.420 13.517 23.409 27.139 hybrid contribution -0.413 -0.753 -1.536 1.760 sum -2.833 12.764 21.873 25.483 Atomic orbital electron populations 1.21501 0.94459 1.01490 1.01114 1.20921 0.97051 0.93533 1.02641 1.22848 0.89052 0.94921 0.95789 1.21063 1.03473 1.00757 0.92606 1.22453 1.09535 1.03649 0.90643 1.19172 0.79429 0.83906 0.85146 1.90747 1.41846 1.25069 1.87933 1.45679 1.57268 1.28581 1.04739 1.21084 0.99913 0.95563 0.81982 1.22059 0.97726 0.83376 0.92359 0.91124 1.22647 0.98212 0.98077 0.90939 1.61723 1.59894 1.03247 1.00689 1.21755 0.96907 0.95246 0.93405 1.20750 0.86965 0.86736 0.82726 1.90464 1.40344 1.72101 1.47047 1.41939 1.35699 1.25457 1.18084 1.19674 1.17525 1.04621 1.04116 0.90331 1.26027 0.98537 1.01930 0.94886 1.69678 1.34976 1.41702 1.09791 0.84885 0.77933 0.77411 0.78202 1.19860 1.19709 1.19549 1.22997 0.97877 0.89683 1.00827 1.22856 1.00864 0.93351 0.83965 1.87943 1.73784 1.21845 1.46848 0.91924 0.93974 0.93082 0.91336 0.90385 0.89115 0.90123 0.89659 0.82899 0.74921 0.91813 0.91193 0.90724 0.94411 0.91644 0.86602 0.77041 0.91342 0.87657 0.93546 0.92030 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.38 71.98 0.67 -1.92 16 2 C -0.10 -2.04 5.33 29.85 0.16 -1.88 16 3 C -0.02 -0.38 5.36 -17.62 -0.09 -0.48 16 4 C -0.12 -1.02 10.05 71.24 0.72 -0.30 16 5 C -0.24 -4.22 9.63 23.43 0.23 -3.99 16 6 C 0.53 13.18 7.61 86.57 0.66 13.84 16 7 O -0.57 -18.13 11.32 -4.09 -0.05 -18.17 16 8 N -0.71 -16.04 5.45 -466.70 -2.54 -18.58 16 9 C 0.14 3.73 5.37 86.38 0.46 4.19 16 10 C 0.10 2.76 2.89 30.63 0.09 2.85 16 11 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 12 C 0.03 0.98 4.58 86.32 0.40 1.38 16 13 N -0.53 -16.76 4.43 -899.77 -3.98 -20.75 16 14 C 0.06 1.98 5.45 85.56 0.47 2.45 16 15 C 0.44 20.89 7.52 87.66 0.66 21.54 16 16 O -0.61 -33.53 14.06 -3.06 -0.04 -33.57 16 17 N -0.57 -29.47 5.29 -306.98 -1.62 -31.09 16 18 C -0.33 -18.78 9.68 84.04 0.81 -17.97 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.76 5.50 84.92 0.47 -0.30 16 21 N -0.92 -49.83 13.05 21.66 0.28 -49.55 16 22 Si 0.99 43.34 29.55 68.60 2.03 45.36 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 C 0.01 0.30 5.64 86.31 0.49 0.79 16 27 C 0.07 1.24 7.01 72.01 0.50 1.75 16 28 O -0.39 -8.97 10.23 -148.98 -1.52 -10.50 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.04 1.07 6.49 -2.39 -0.02 1.05 16 31 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 1.79 5.87 -2.39 -0.01 1.78 16 33 H 0.08 1.19 8.03 -2.39 -0.02 1.17 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.08 0.53 8.03 -2.39 -0.02 0.51 16 36 H 0.08 0.49 8.05 -2.39 -0.02 0.47 16 37 H 0.15 1.71 8.04 -2.91 -0.02 1.68 16 38 H 0.41 7.27 8.34 -92.71 -0.77 6.50 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.07 3.02 6.05 -2.39 -0.01 3.01 16 42 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.07 2.06 8.10 -2.38 -0.02 2.04 16 44 H 0.12 3.38 8.00 -2.38 -0.02 3.37 16 45 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 46 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 47 H 0.11 1.93 8.07 -2.38 -0.02 1.91 16 48 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 50 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -72.93 403.50 -1.32 -74.25 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -0.55 Total: 40.65 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 6.68 Total: 21.94 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -7.87 Total: -119.97 kcal Atomic # 8 Polarization: -60.63 SS G_CDS: -1.61 Total: -62.24 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -72.93 -1.32 -74.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482187664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.696 kcal (2) G-P(sol) polarization free energy of solvation -72.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds