Wall clock time and date at job start Sat Apr 11 2020 05:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47255 * 2 1 4 4 C 1.50700 * 119.99789 * 87.56470 * 3 2 1 5 5 C 1.32994 * 120.00188 * 267.56999 * 3 2 1 6 6 C 1.47106 * 119.99898 * 7.57861 * 5 3 2 7 7 O 1.21613 * 120.00097 * 6.27535 * 6 5 3 8 8 N 1.34771 * 119.99711 * 186.27407 * 6 5 3 9 9 C 1.46499 * 119.99834 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47141 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.50934 * 305.08989 * 10 9 8 12 12 C 1.53101 * 109.50981 * 185.00042 * 10 9 8 13 13 N 1.47004 * 109.26087 * 183.21729 * 12 10 9 14 14 C 1.46904 * 111.00086 * 182.38845 * 13 12 10 15 15 C 1.50703 * 109.47019 * 169.99762 * 14 13 12 16 16 O 1.21290 * 120.00195 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99954 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00168 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99825 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00146 * 179.97438 * 18 17 15 21 21 N 1.31419 * 119.99830 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00102 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47053 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46904 * 120.00113 * 22 20 18 25 25 H 1.48494 * 109.47349 * 240.00237 * 22 20 18 26 26 C 1.47015 * 110.75392 * 58.61666 * 13 12 10 27 27 C 1.53098 * 109.25953 * 301.38371 * 26 13 12 28 28 O 1.43016 * 109.25483 * 56.84539 * 27 26 13 29 29 H 1.09008 * 109.47213 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47194 * 300.00028 * 1 2 3 31 31 H 1.09006 * 109.46806 * 60.00396 * 1 2 3 32 32 H 1.08999 * 109.47194 * 239.99972 * 2 1 3 33 33 H 1.09000 * 109.46954 * 120.00301 * 2 1 3 34 34 H 1.08999 * 109.47468 * 270.00017 * 4 3 2 35 35 H 1.09000 * 109.47019 * 30.00555 * 4 3 2 36 36 H 1.09004 * 109.47317 * 150.00233 * 4 3 2 37 37 H 1.08000 * 120.00178 * 187.58162 * 5 3 2 38 38 H 0.97007 * 120.00575 * 359.97438 * 8 6 5 39 39 H 1.09003 * 109.47353 * 60.00073 * 9 8 6 40 40 H 1.08999 * 109.47532 * 299.99870 * 9 8 6 41 41 H 1.08995 * 109.50732 * 63.27880 * 12 10 9 42 42 H 1.09009 * 109.50430 * 303.15253 * 12 10 9 43 43 H 1.09007 * 109.46947 * 50.00422 * 14 13 12 44 44 H 1.08996 * 109.47252 * 290.00366 * 14 13 12 45 45 H 0.97001 * 119.99888 * 0.02562 * 17 15 14 46 46 H 0.96997 * 119.99725 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.50640 * 61.31608 * 26 13 12 48 48 H 1.09004 * 109.51052 * 181.44606 * 26 13 12 49 49 H 1.09007 * 109.50242 * 296.91585 * 27 26 13 50 50 H 1.08992 * 109.54853 * 176.80450 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2312 2.1496 1.3039 5 6 2.3001 2.0315 -1.1507 6 6 1.9505 1.3851 -2.4251 7 8 1.3157 0.3479 -2.4268 8 7 2.3338 1.9426 -3.5907 9 6 1.9853 1.2993 -4.8599 10 6 2.5352 2.1303 -6.0209 11 1 2.1735 3.1552 -5.9383 12 6 2.0663 1.5279 -7.3480 13 7 2.6601 2.2838 -8.4603 14 6 2.1898 1.7724 -9.7546 15 6 2.6170 2.7133 -10.8516 16 8 3.2513 3.7113 -10.5819 17 7 2.2942 2.4457 -12.1326 18 6 2.6833 3.3013 -13.1306 19 1 3.2481 4.1900 -12.8904 20 6 2.3510 3.0252 -14.4512 21 7 1.6633 1.9441 -14.7435 22 14 2.8805 4.1914 -15.8110 23 1 3.6371 5.3260 -15.2233 24 1 3.7462 3.4664 -16.7756 25 1 1.6797 4.7085 -16.5152 26 6 4.1280 2.2551 -8.3846 27 6 4.5764 2.8502 -7.0471 28 8 3.9648 2.1227 -5.9785 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.3112 2.6676 1.5747 35 1 2.4885 1.4338 2.0847 36 1 3.0379 2.8746 1.1956 37 1 2.7741 3.0019 -1.1496 38 1 2.8399 2.7702 -3.5894 39 1 0.9009 1.2287 -4.9458 40 1 2.4180 0.2993 -4.8914 41 1 0.9795 1.5838 -7.4092 42 1 2.3817 0.4861 -7.4065 43 1 1.1023 1.6984 -9.7426 44 1 2.6191 0.7867 -9.9336 45 1 1.7866 1.6478 -12.3483 46 1 1.4316 1.7512 -15.6654 47 1 4.4763 1.2250 -8.4596 48 1 4.5463 2.8419 -9.2025 49 1 4.2745 3.8963 -6.9948 50 1 5.6607 2.7796 -6.9617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482187665.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:42 Heat of formation + Delta-G solvation = -97.090765 kcal Electronic energy + Delta-G solvation = -29115.281092 eV Core-core repulsion = 24949.994229 eV Total energy + Delta-G solvation = -4165.286863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.26761 -39.61160 -38.11656 -36.51124 -35.38292 -34.76196 -33.85633 -31.92975 -31.29146 -30.95879 -29.13544 -28.56758 -26.68085 -25.08739 -23.90747 -23.80034 -22.57327 -21.26922 -20.36874 -19.28667 -18.92521 -17.89623 -17.23903 -16.73930 -16.28864 -15.93266 -15.89662 -15.22869 -15.11221 -15.03837 -14.72813 -14.58699 -14.20425 -14.05404 -13.95270 -13.62337 -13.53987 -13.28206 -13.15561 -13.09462 -12.80927 -12.63640 -12.35118 -12.17900 -11.99305 -11.72519 -11.54465 -11.33937 -11.24969 -11.22285 -11.04535 -10.95170 -10.52073 -10.36809 -10.25919 -9.76787 -9.65096 -9.51770 -9.47577 -9.07752 -8.50445 -8.03868 -7.94669 -6.45101 -3.86116 1.09400 2.99690 3.11004 3.13843 3.24833 3.31653 3.61403 3.83106 3.87920 4.19257 4.42236 4.45488 4.71973 4.81750 4.89956 4.95453 5.02821 5.07052 5.08989 5.15061 5.17358 5.21340 5.32117 5.35263 5.37620 5.40629 5.45232 5.53406 5.55562 5.62483 5.70418 5.76571 5.83312 5.85030 5.91663 6.06261 6.09280 6.15136 6.21422 6.26270 6.31163 6.36773 7.06635 7.11343 7.25734 7.37767 7.52156 8.02616 8.10231 8.57553 9.14428 9.50356 10.01534 10.72577 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034692 B = 0.001656 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.913887 B =16900.596526 C =17372.875480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.107 4.107 3 C -0.028 4.028 4 C -0.127 4.127 5 C -0.233 4.233 6 C 0.544 3.456 7 O -0.539 6.539 8 N -0.720 5.720 9 C 0.131 3.869 10 C 0.084 3.916 11 H 0.074 0.926 12 C 0.026 3.974 13 N -0.513 5.513 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.579 6.579 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.014 3.986 27 C 0.068 3.932 28 O -0.385 6.385 29 H 0.054 0.946 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.404 0.596 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.033 0.967 48 H 0.114 0.886 49 H 0.062 0.938 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.326 -2.567 27.372 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.144 4.144 3 C -0.030 4.030 4 C -0.184 4.184 5 C -0.253 4.253 6 C 0.334 3.666 7 O -0.419 6.419 8 N -0.371 5.371 9 C 0.007 3.993 10 C 0.026 3.974 11 H 0.092 0.908 12 C -0.103 4.103 13 N -0.237 5.237 14 C -0.085 4.085 15 C 0.229 3.771 16 O -0.464 6.464 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.114 4.114 27 C -0.008 4.008 28 O -0.304 6.304 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.143 0.857 38 H 0.238 0.762 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.051 0.949 48 H 0.132 0.868 49 H 0.080 0.920 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.192 -2.301 27.504 27.600 hybrid contribution 0.287 -0.218 -1.371 1.418 sum 0.480 -2.519 26.133 26.258 Atomic orbital electron populations 1.21522 0.94201 1.01704 1.01393 1.21050 0.97174 0.92502 1.03635 1.22567 0.90262 0.95723 0.94434 1.21011 1.02659 1.00248 0.94440 1.22355 1.08769 1.02281 0.91937 1.18552 0.79466 0.84357 0.84257 1.90724 1.40381 1.23446 1.87386 1.45793 1.57519 1.28337 1.05439 1.21313 1.00062 0.96797 0.81135 1.22309 0.82176 0.99546 0.93382 0.90778 1.22675 1.00608 0.96024 0.91040 1.61780 1.07512 1.53379 1.01058 1.21874 1.01063 0.96458 0.89116 1.19688 0.85738 0.88321 0.83369 1.90473 1.44070 1.29358 1.82465 1.41874 1.49213 1.24066 1.04762 1.19749 1.32604 1.05166 0.85376 0.87821 1.25272 0.96881 0.97242 0.98537 1.69623 1.38725 1.25515 1.20331 0.85795 0.78313 0.79945 0.80252 1.19218 1.20767 1.20729 1.22966 0.88038 1.00250 1.00115 1.22679 0.97439 0.95559 0.85133 1.87948 1.18211 1.75012 1.49217 0.92718 0.93797 0.91826 0.87790 0.92255 0.90224 0.91139 0.91141 0.85673 0.76154 0.89851 0.90639 0.89490 0.93864 0.89150 0.93253 0.77466 0.91886 0.94924 0.86772 0.92011 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 9.45 37.16 0.35 -0.79 16 2 C -0.11 -0.93 5.32 -27.89 -0.15 -1.08 16 3 C -0.03 -0.22 5.36 -101.17 -0.54 -0.76 16 4 C -0.13 -0.63 10.05 36.01 0.36 -0.27 16 5 C -0.23 -1.92 9.63 -37.80 -0.36 -2.28 16 6 C 0.54 5.81 7.61 -12.67 -0.10 5.71 16 7 O -0.54 -7.14 11.67 5.27 0.06 -7.08 16 8 N -0.72 -6.90 5.50 -61.49 -0.34 -7.24 16 9 C 0.13 1.35 5.34 -4.04 -0.02 1.33 16 10 C 0.08 0.96 2.84 -26.68 -0.08 0.88 16 11 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 12 C 0.03 0.33 4.93 -3.72 -0.02 0.31 16 13 N -0.51 -8.32 4.46 -235.75 -1.05 -9.38 16 14 C 0.05 0.81 5.45 -4.97 -0.03 0.78 16 15 C 0.44 10.21 7.49 -10.98 -0.08 10.13 16 16 O -0.58 -15.10 13.92 5.55 0.08 -15.02 16 17 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 18 C -0.30 -8.22 9.68 -14.94 -0.14 -8.36 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 22 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.01 0.22 5.29 -3.71 -0.02 0.20 16 27 C 0.07 0.90 7.01 37.21 0.26 1.16 16 28 O -0.38 -4.87 10.42 -35.23 -0.37 -5.24 16 29 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.67 6.91 -51.93 -0.36 0.31 16 32 H 0.10 1.16 5.57 -51.93 -0.29 0.87 16 33 H 0.06 0.43 8.06 -51.93 -0.42 0.01 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.30 8.06 -51.93 -0.42 -0.12 16 36 H 0.07 0.29 8.06 -51.93 -0.42 -0.13 16 37 H 0.13 0.75 8.04 -52.49 -0.42 0.33 16 38 H 0.40 3.21 8.46 -40.82 -0.35 2.87 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.09 1.42 8.04 -51.93 -0.42 1.01 16 44 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 45 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 46 H 0.27 6.90 8.31 -40.82 -0.34 6.57 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.11 2.16 5.88 -51.93 -0.31 1.86 16 49 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 404.19 15.07 6.09 6.09 Total: -1.00 -32.06 404.19 -8.84 -40.90 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -8.30 Total: 11.34 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -0.66 Total: 7.46 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.72 Total: -54.23 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.23 Total: -27.34 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.06 -8.84 -40.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482187665.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.192 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds