Wall clock time and date at job start Sat Apr 11 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47255 * 2 1 4 4 C 1.50700 * 119.99789 * 87.56470 * 3 2 1 5 5 C 1.32994 * 120.00188 * 267.56999 * 3 2 1 6 6 C 1.47106 * 119.99898 * 7.57861 * 5 3 2 7 7 O 1.21613 * 120.00097 * 6.27535 * 6 5 3 8 8 N 1.34771 * 119.99711 * 186.27407 * 6 5 3 9 9 C 1.46499 * 119.99834 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47141 * 179.97438 * 9 8 6 11 11 H 1.08998 * 109.50934 * 305.08989 * 10 9 8 12 12 C 1.53101 * 109.50981 * 185.00042 * 10 9 8 13 13 N 1.47004 * 109.26087 * 183.21729 * 12 10 9 14 14 C 1.46904 * 111.00086 * 182.38845 * 13 12 10 15 15 C 1.50703 * 109.47019 * 169.99762 * 14 13 12 16 16 O 1.21290 * 120.00195 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99954 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00168 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99825 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00146 * 179.97438 * 18 17 15 21 21 N 1.31419 * 119.99830 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00102 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47053 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.46904 * 120.00113 * 22 20 18 25 25 H 1.48494 * 109.47349 * 240.00237 * 22 20 18 26 26 C 1.47015 * 110.75392 * 58.61666 * 13 12 10 27 27 C 1.53098 * 109.25953 * 301.38371 * 26 13 12 28 28 O 1.43016 * 109.25483 * 56.84539 * 27 26 13 29 29 H 1.09008 * 109.47213 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47194 * 300.00028 * 1 2 3 31 31 H 1.09006 * 109.46806 * 60.00396 * 1 2 3 32 32 H 1.08999 * 109.47194 * 239.99972 * 2 1 3 33 33 H 1.09000 * 109.46954 * 120.00301 * 2 1 3 34 34 H 1.08999 * 109.47468 * 270.00017 * 4 3 2 35 35 H 1.09000 * 109.47019 * 30.00555 * 4 3 2 36 36 H 1.09004 * 109.47317 * 150.00233 * 4 3 2 37 37 H 1.08000 * 120.00178 * 187.58162 * 5 3 2 38 38 H 0.97007 * 120.00575 * 359.97438 * 8 6 5 39 39 H 1.09003 * 109.47353 * 60.00073 * 9 8 6 40 40 H 1.08999 * 109.47532 * 299.99870 * 9 8 6 41 41 H 1.08995 * 109.50732 * 63.27880 * 12 10 9 42 42 H 1.09009 * 109.50430 * 303.15253 * 12 10 9 43 43 H 1.09007 * 109.46947 * 50.00422 * 14 13 12 44 44 H 1.08996 * 109.47252 * 290.00366 * 14 13 12 45 45 H 0.97001 * 119.99888 * 0.02562 * 17 15 14 46 46 H 0.96997 * 119.99725 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.50640 * 61.31608 * 26 13 12 48 48 H 1.09004 * 109.51052 * 181.44606 * 26 13 12 49 49 H 1.09007 * 109.50242 * 296.91585 * 27 26 13 50 50 H 1.08992 * 109.54853 * 176.80450 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2312 2.1496 1.3039 5 6 2.3001 2.0315 -1.1507 6 6 1.9505 1.3851 -2.4251 7 8 1.3157 0.3479 -2.4268 8 7 2.3338 1.9426 -3.5907 9 6 1.9853 1.2993 -4.8599 10 6 2.5352 2.1303 -6.0209 11 1 2.1735 3.1552 -5.9383 12 6 2.0663 1.5279 -7.3480 13 7 2.6601 2.2838 -8.4603 14 6 2.1898 1.7724 -9.7546 15 6 2.6170 2.7133 -10.8516 16 8 3.2513 3.7113 -10.5819 17 7 2.2942 2.4457 -12.1326 18 6 2.6833 3.3013 -13.1306 19 1 3.2481 4.1900 -12.8904 20 6 2.3510 3.0252 -14.4512 21 7 1.6633 1.9441 -14.7435 22 14 2.8805 4.1914 -15.8110 23 1 3.6371 5.3260 -15.2233 24 1 3.7462 3.4664 -16.7756 25 1 1.6797 4.7085 -16.5152 26 6 4.1280 2.2551 -8.3846 27 6 4.5764 2.8502 -7.0471 28 8 3.9648 2.1227 -5.9785 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.3112 2.6676 1.5747 35 1 2.4885 1.4338 2.0847 36 1 3.0379 2.8746 1.1956 37 1 2.7741 3.0019 -1.1496 38 1 2.8399 2.7702 -3.5894 39 1 0.9009 1.2287 -4.9458 40 1 2.4180 0.2993 -4.8914 41 1 0.9795 1.5838 -7.4092 42 1 2.3817 0.4861 -7.4065 43 1 1.1023 1.6984 -9.7426 44 1 2.6191 0.7867 -9.9336 45 1 1.7866 1.6478 -12.3483 46 1 1.4316 1.7512 -15.6654 47 1 4.4763 1.2250 -8.4596 48 1 4.5463 2.8419 -9.2025 49 1 4.2745 3.8963 -6.9948 50 1 5.6607 2.7796 -6.9617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482187665.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:41 Heat of formation + Delta-G solvation = -121.061300 kcal Electronic energy + Delta-G solvation = -29116.320532 eV Core-core repulsion = 24949.994229 eV Total energy + Delta-G solvation = -4166.326303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.21201 -40.69918 -39.76139 -37.24018 -36.64392 -35.78346 -35.63225 -33.29160 -32.84526 -31.65497 -30.42169 -29.27985 -27.82219 -26.61775 -25.17072 -24.61537 -23.62397 -22.07882 -21.44591 -21.02505 -19.90835 -19.63281 -18.02748 -17.94306 -17.48966 -17.14104 -16.90745 -16.58821 -16.42541 -16.06728 -15.86800 -15.80419 -15.44669 -15.34598 -15.13093 -14.71364 -14.62130 -14.41170 -13.97568 -13.78827 -13.66933 -13.59788 -13.49847 -13.23088 -13.11454 -13.00416 -12.87238 -12.78998 -12.41247 -12.37171 -12.24338 -12.11243 -11.94868 -11.73460 -11.61759 -11.44380 -10.82687 -10.51075 -10.23123 -10.17312 -10.00633 -9.79384 -9.34139 -8.47170 -5.95800 0.45583 1.36232 1.41850 1.55761 2.03553 2.16770 2.29958 2.36170 2.63647 2.70534 3.19576 3.33154 3.78249 3.79626 3.86961 3.94063 3.98897 4.08054 4.16349 4.26343 4.31958 4.41355 4.46303 4.50157 4.50651 4.55629 4.57741 4.61387 4.64380 4.68985 4.73817 4.85685 4.87881 4.93981 5.01554 5.04503 5.12931 5.24924 5.37448 5.40851 5.50823 5.60414 5.73055 5.77040 5.95110 6.04790 6.14359 6.59452 6.64476 7.12324 7.33571 7.55415 8.10563 8.70402 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034692 B = 0.001656 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.913887 B =16900.596526 C =17372.875480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.110 4.110 3 C -0.025 4.025 4 C -0.125 4.125 5 C -0.245 4.245 6 C 0.536 3.464 7 O -0.571 6.571 8 N -0.715 5.715 9 C 0.140 3.860 10 C 0.091 3.909 11 H 0.078 0.922 12 C 0.026 3.974 13 N -0.529 5.529 14 C 0.057 3.943 15 C 0.442 3.558 16 O -0.613 6.613 17 N -0.574 5.574 18 C -0.331 4.331 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.015 3.985 27 C 0.077 3.923 28 O -0.386 6.386 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.150 0.850 38 H 0.413 0.587 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.048 0.952 43 H 0.113 0.887 44 H 0.066 0.934 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.035 0.965 48 H 0.078 0.922 49 H 0.058 0.942 50 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.236 -2.309 29.036 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C -0.027 4.027 4 C -0.181 4.181 5 C -0.265 4.265 6 C 0.327 3.673 7 O -0.454 6.454 8 N -0.366 5.366 9 C 0.015 3.985 10 C 0.033 3.967 11 H 0.096 0.904 12 C -0.102 4.102 13 N -0.254 5.254 14 C -0.074 4.074 15 C 0.230 3.770 16 O -0.499 6.499 17 N -0.211 5.211 18 C -0.461 4.461 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.113 4.113 27 C 0.000 4.000 28 O -0.305 6.305 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.167 0.833 38 H 0.249 0.751 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.067 0.933 43 H 0.131 0.869 44 H 0.084 0.916 45 H 0.229 0.771 46 H 0.087 0.913 47 H 0.054 0.946 48 H 0.097 0.903 49 H 0.076 0.924 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.102 -2.047 29.183 29.255 hybrid contribution 0.307 -0.337 -1.809 1.866 sum 0.410 -2.385 27.374 27.481 Atomic orbital electron populations 1.21471 0.94308 1.01573 1.01064 1.21016 0.97117 0.93456 1.03057 1.22827 0.89002 0.95145 0.95696 1.21063 1.03612 1.00512 0.92893 1.22471 1.09877 1.03357 0.90811 1.19039 0.78992 0.84053 0.85206 1.90719 1.41888 1.24887 1.87876 1.45752 1.57358 1.28524 1.04991 1.21166 1.00191 0.95985 0.81156 1.22300 0.81542 0.99807 0.93072 0.90398 1.22781 1.01487 0.95887 0.90094 1.61748 1.07782 1.54547 1.01304 1.21752 1.02404 0.95295 0.87935 1.20671 0.84083 0.88433 0.83852 1.90453 1.45158 1.31149 1.83104 1.41939 1.49889 1.24060 1.05228 1.19702 1.33999 1.05522 0.86869 0.90166 1.26037 0.96502 0.98680 1.00075 1.69683 1.38951 1.26425 1.21138 0.84865 0.78188 0.77849 0.77397 1.19714 1.19713 1.19697 1.22877 0.88025 0.99904 1.00483 1.22619 0.98584 0.95015 0.83748 1.87958 1.18934 1.74900 1.48725 0.92840 0.92037 0.94058 0.90511 0.90641 0.89229 0.90176 0.89864 0.83271 0.75118 0.89284 0.91798 0.87749 0.93348 0.86855 0.91643 0.77074 0.91348 0.94646 0.90328 0.92413 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.45 71.98 0.68 -1.46 16 2 C -0.11 -1.83 5.32 29.85 0.16 -1.67 16 3 C -0.02 -0.34 5.36 -17.62 -0.09 -0.43 16 4 C -0.12 -0.88 10.05 71.24 0.72 -0.16 16 5 C -0.24 -3.66 9.63 23.43 0.23 -3.43 16 6 C 0.54 11.11 7.61 86.57 0.66 11.77 16 7 O -0.57 -15.28 11.67 -4.07 -0.05 -15.33 16 8 N -0.72 -12.88 5.50 -466.71 -2.57 -15.45 16 9 C 0.14 2.72 5.34 86.38 0.46 3.18 16 10 C 0.09 1.92 2.84 30.63 0.09 2.01 16 11 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 12 C 0.03 0.61 4.93 86.32 0.43 1.03 16 13 N -0.53 -16.69 4.46 -899.76 -4.01 -20.71 16 14 C 0.06 1.95 5.45 85.56 0.47 2.42 16 15 C 0.44 20.69 7.49 87.66 0.66 21.35 16 16 O -0.61 -32.87 13.92 -3.06 -0.04 -32.92 16 17 N -0.57 -29.15 5.29 -306.98 -1.62 -30.77 16 18 C -0.33 -18.64 9.68 84.04 0.81 -17.82 16 19 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 21 N -0.92 -49.49 13.05 21.66 0.28 -49.21 16 22 Si 0.99 42.66 29.55 68.60 2.03 44.69 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 26 C 0.02 0.48 5.29 86.31 0.46 0.94 16 27 C 0.08 1.94 7.01 72.01 0.50 2.44 16 28 O -0.39 -9.17 10.42 -148.98 -1.55 -10.72 16 29 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.04 0.88 6.91 -2.38 -0.02 0.86 16 32 H 0.08 1.74 5.57 -2.39 -0.01 1.73 16 33 H 0.08 0.98 8.06 -2.39 -0.02 0.96 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.08 0.43 8.06 -2.39 -0.02 0.41 16 36 H 0.08 0.41 8.06 -2.38 -0.02 0.39 16 37 H 0.15 1.42 8.04 -2.91 -0.02 1.40 16 38 H 0.41 5.90 8.46 -92.70 -0.78 5.11 16 39 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.10 2.11 8.09 -2.39 -0.02 2.09 16 42 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.11 3.37 8.04 -2.38 -0.02 3.35 16 44 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 45 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 46 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 47 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.08 3.07 5.88 -2.39 -0.01 3.06 16 49 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 50 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -70.59 404.19 -1.42 -72.01 By element: Atomic # 1 Polarization: 39.04 SS G_CDS: -0.56 Total: 38.48 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: 6.68 Total: 19.92 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -7.92 Total: -116.14 kcal Atomic # 8 Polarization: -57.32 SS G_CDS: -1.64 Total: -58.96 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -70.59 -1.42 -72.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482187665.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.051 kcal (2) G-P(sol) polarization free energy of solvation -70.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds