Wall clock time and date at job start Sat Apr 11 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.46848 * 2 1 4 4 C 1.50701 * 119.99763 * 275.00013 * 3 2 1 5 5 C 1.32990 * 120.00381 * 95.00108 * 3 2 1 6 6 C 1.47101 * 120.00055 * 172.83753 * 5 3 2 7 7 O 1.21614 * 120.00536 * 354.00991 * 6 5 3 8 8 N 1.34776 * 120.00081 * 174.00760 * 6 5 3 9 9 C 1.46506 * 120.00392 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47217 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.50471 * 305.07990 * 10 9 8 12 12 C 1.53092 * 109.50470 * 185.00160 * 10 9 8 13 13 N 1.47019 * 109.25978 * 183.21363 * 12 10 9 14 14 C 1.46901 * 111.00358 * 182.38741 * 13 12 10 15 15 C 1.50700 * 109.47341 * 169.99961 * 14 13 12 16 16 O 1.21293 * 119.99743 * 0.02562 * 15 14 13 17 17 N 1.34767 * 119.99901 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.99751 * 180.02562 * 17 15 14 19 19 H 1.07996 * 119.99899 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99778 * 180.02562 * 18 17 15 21 21 N 1.31403 * 120.00226 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99848 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46848 * 59.99883 * 22 20 18 24 24 H 1.48499 * 109.47125 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47031 * 300.00202 * 22 20 18 26 26 C 1.47015 * 110.74981 * 58.61446 * 13 12 10 27 27 C 1.53098 * 109.25839 * 301.38547 * 26 13 12 28 28 O 1.43005 * 109.50905 * 65.21472 * 10 9 8 29 29 H 1.08999 * 109.47203 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47252 * 300.00036 * 1 2 3 31 31 H 1.08994 * 109.47660 * 60.00084 * 1 2 3 32 32 H 1.09001 * 109.47252 * 239.99964 * 2 1 3 33 33 H 1.09000 * 109.47544 * 119.99489 * 2 1 3 34 34 H 1.09001 * 109.47191 * 264.39213 * 4 3 2 35 35 H 1.09003 * 109.47234 * 24.38974 * 4 3 2 36 36 H 1.08999 * 109.47271 * 144.39202 * 4 3 2 37 37 H 1.07998 * 120.00069 * 352.83949 * 5 3 2 38 38 H 0.97002 * 119.99789 * 0.02562 * 8 6 5 39 39 H 1.09000 * 109.46843 * 59.99606 * 9 8 6 40 40 H 1.08998 * 109.46523 * 300.00251 * 9 8 6 41 41 H 1.09001 * 109.50887 * 303.14439 * 12 10 9 42 42 H 1.09002 * 109.51512 * 63.23269 * 12 10 9 43 43 H 1.09003 * 109.46957 * 290.00366 * 14 13 12 44 44 H 1.08999 * 109.46930 * 50.00090 * 14 13 12 45 45 H 0.96998 * 120.00625 * 0.02562 * 17 15 14 46 46 H 0.97004 * 120.00047 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.51002 * 61.32026 * 26 13 12 48 48 H 1.09000 * 109.50779 * 181.41065 * 26 13 12 49 49 H 1.08997 * 109.51084 * 176.78770 * 27 26 13 50 50 H 1.09005 * 109.50417 * 296.87594 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.1761 2.1691 -1.3002 5 6 2.3485 2.0144 1.1473 6 6 2.9855 3.3403 1.1383 7 8 3.3221 3.8462 0.0849 8 7 3.1961 3.9946 2.2976 9 6 3.8300 5.3154 2.2887 10 6 3.9512 5.8326 3.7235 11 1 2.9697 5.8239 4.1976 12 6 4.4980 7.2625 3.7069 13 7 4.6849 7.7263 5.0894 14 6 5.1561 9.1173 5.1190 15 6 5.1018 9.6362 6.5328 16 8 4.7096 8.9177 7.4278 17 7 5.4890 10.8985 6.8026 18 6 5.4401 11.3704 8.0890 19 1 5.0909 10.7306 8.8859 20 6 5.8388 12.6721 8.3671 21 7 6.2632 13.4507 7.3973 22 14 5.7714 13.3153 10.1196 23 1 6.6411 12.4806 10.9869 24 1 6.2472 14.7217 10.1494 25 1 4.3732 13.2546 10.6158 26 6 5.6081 6.8418 5.8152 27 6 5.0501 5.4162 5.8106 28 8 4.8455 4.9940 4.4596 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.2045 2.0905 -1.6528 35 1 1.5036 1.7398 -2.0428 36 1 1.9243 3.2183 -1.1454 37 1 2.1378 1.5229 2.0856 38 1 2.9280 3.5910 3.1379 39 1 3.2229 6.0058 1.7032 40 1 4.8228 5.2388 1.8454 41 1 5.4546 7.2803 3.1846 42 1 3.7919 7.9165 3.1953 43 1 6.1827 9.1610 4.7550 44 1 4.5185 9.7305 4.4822 45 1 5.8023 11.4733 6.0868 46 1 6.5419 14.3593 7.5916 47 1 6.5825 6.8528 5.3266 48 1 5.7125 7.1891 6.8431 49 1 5.7585 4.7464 6.2980 50 1 4.1012 5.3950 6.3468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482187667.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:49 Heat of formation + Delta-G solvation = -101.325523 kcal Electronic energy + Delta-G solvation = -28921.763446 eV Core-core repulsion = 24756.292951 eV Total energy + Delta-G solvation = -4165.470496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.21950 -39.57366 -38.10826 -36.65147 -35.42870 -34.83733 -33.85210 -31.84090 -31.29349 -31.18243 -29.10790 -28.29356 -26.65787 -25.14782 -24.31971 -23.79813 -22.52645 -21.19562 -20.34323 -19.27878 -18.91371 -17.89334 -17.21318 -16.72694 -16.33982 -15.93078 -15.88666 -15.22599 -15.09398 -14.97473 -14.87929 -14.70384 -14.33575 -14.09498 -13.93067 -13.73358 -13.56805 -13.36091 -13.26646 -12.92267 -12.77379 -12.46544 -12.34045 -11.99665 -11.94558 -11.79574 -11.71959 -11.53626 -11.33945 -11.24503 -11.20343 -10.93218 -10.51355 -10.46260 -10.24487 -9.83885 -9.66639 -9.51682 -9.49246 -9.08923 -8.50069 -8.03546 -7.94356 -6.44562 -3.85720 1.09575 3.00094 3.10541 3.17789 3.24053 3.28037 3.61589 3.83429 3.88252 4.19389 4.31261 4.43883 4.72038 4.78176 4.82385 4.83898 4.92012 4.98354 5.03670 5.13260 5.17640 5.21686 5.29423 5.35646 5.39112 5.44082 5.46555 5.53904 5.54958 5.56250 5.62745 5.73351 5.76898 5.79994 5.83786 5.85383 6.09579 6.18625 6.21687 6.23192 6.26544 6.31357 7.06949 7.11713 7.26014 7.37673 7.52040 8.02556 8.09263 8.57981 9.14567 9.50638 10.01976 10.72929 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034410 B = 0.001603 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.523251 B =17460.230891 C =17759.282222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.028 4.028 4 C -0.124 4.124 5 C -0.233 4.233 6 C 0.545 3.455 7 O -0.545 6.545 8 N -0.720 5.720 9 C 0.131 3.869 10 C 0.085 3.915 11 H 0.074 0.926 12 C 0.026 3.974 13 N -0.512 5.512 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.580 6.580 17 N -0.562 5.562 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.024 3.976 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.014 3.986 27 C 0.068 3.932 28 O -0.385 6.385 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.404 0.596 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.032 0.968 48 H 0.114 0.886 49 H 0.096 0.904 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 -22.552 -14.670 27.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.135 4.135 3 C -0.030 4.030 4 C -0.180 4.180 5 C -0.253 4.253 6 C 0.335 3.665 7 O -0.425 6.425 8 N -0.371 5.371 9 C 0.007 3.993 10 C 0.026 3.974 11 H 0.092 0.908 12 C -0.104 4.104 13 N -0.237 5.237 14 C -0.085 4.085 15 C 0.229 3.771 16 O -0.464 6.464 17 N -0.198 5.198 18 C -0.431 4.431 19 H 0.121 0.879 20 C -0.178 4.178 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.114 4.114 27 C -0.008 4.008 28 O -0.304 6.304 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.143 0.857 38 H 0.239 0.761 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.108 0.892 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.051 0.949 48 H 0.132 0.868 49 H 0.115 0.885 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.700 -22.611 -14.628 28.009 hybrid contribution 0.827 0.980 0.684 1.453 sum -6.873 -21.630 -13.944 26.638 Atomic orbital electron populations 1.21726 0.94169 1.02108 1.02504 1.20780 0.96717 0.92631 1.03392 1.22556 0.90194 0.94751 0.95480 1.21143 1.02297 1.01288 0.93295 1.22354 1.07541 0.96482 0.98962 1.18544 0.79082 0.85497 0.83424 1.90761 1.52054 1.69123 1.30541 1.45781 1.62344 1.19684 1.09300 1.21317 0.99020 0.84200 0.94803 1.22301 0.94036 0.89500 0.91564 0.90765 1.22676 1.00918 0.95876 0.90887 1.61782 1.48457 1.01539 1.11940 1.21873 0.99307 0.89430 0.97899 1.19679 0.84615 0.83438 0.89416 1.90472 1.51550 1.57140 1.47252 1.41856 1.56987 1.10866 1.10128 1.19651 1.41208 0.96724 0.85478 0.87933 1.25264 0.96892 0.96004 0.99673 1.69600 1.43707 1.08587 1.32295 0.85913 0.78847 0.77575 0.81854 1.19917 1.20960 1.19876 1.22966 0.92967 0.92931 1.02506 1.22678 1.01101 0.94593 0.82437 1.87947 1.66047 1.51688 1.24702 0.92091 0.92314 0.92310 0.90318 0.90639 0.90316 0.92754 0.89209 0.85668 0.76133 0.89846 0.90639 0.93862 0.89483 0.93260 0.89155 0.77460 0.91776 0.94931 0.86768 0.88549 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.89 37.16 0.37 -0.32 16 2 C -0.10 -0.52 6.08 -27.88 -0.17 -0.69 16 3 C -0.03 -0.22 5.36 -101.17 -0.54 -0.76 16 4 C -0.12 -1.06 8.48 36.01 0.31 -0.75 16 5 C -0.23 -1.95 9.60 -37.81 -0.36 -2.31 16 6 C 0.54 5.99 7.61 -12.67 -0.10 5.89 16 7 O -0.54 -7.55 13.28 5.27 0.07 -7.48 16 8 N -0.72 -7.06 5.50 -61.49 -0.34 -7.39 16 9 C 0.13 1.38 5.34 -4.04 -0.02 1.35 16 10 C 0.08 0.97 2.84 -26.69 -0.08 0.89 16 11 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 12 C 0.03 0.33 4.93 -3.71 -0.02 0.31 16 13 N -0.51 -8.35 4.46 -235.74 -1.05 -9.40 16 14 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 15 C 0.44 10.22 7.49 -10.99 -0.08 10.14 16 16 O -0.58 -15.13 13.92 5.55 0.08 -15.05 16 17 N -0.56 -14.02 5.29 -10.96 -0.06 -14.07 16 18 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 20 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 21 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 22 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 C 0.01 0.22 5.29 -3.71 -0.02 0.20 16 27 C 0.07 0.90 7.01 37.21 0.26 1.16 16 28 O -0.38 -4.91 10.42 -35.23 -0.37 -5.28 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.35 8.03 -51.93 -0.42 -0.07 16 34 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 35 H 0.05 0.36 8.09 -51.93 -0.42 -0.06 16 36 H 0.09 0.95 6.14 -51.93 -0.32 0.63 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.40 3.27 8.46 -40.82 -0.35 2.92 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 43 H 0.05 0.81 8.12 -51.93 -0.42 0.38 16 44 H 0.09 1.43 8.04 -51.93 -0.42 1.01 16 45 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.11 2.17 5.88 -51.93 -0.31 1.87 16 49 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 50 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 407.21 15.07 6.14 6.14 Total: -1.00 -32.28 407.21 -8.94 -41.22 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -8.39 Total: 11.05 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -0.72 Total: 8.02 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.72 Total: -54.40 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.22 Total: -27.81 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.28 -8.94 -41.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482187667.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.104 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds