Wall clock time and date at job start Sat Apr 11 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.46848 * 2 1 4 4 C 1.50701 * 119.99763 * 275.00013 * 3 2 1 5 5 C 1.32990 * 120.00381 * 95.00108 * 3 2 1 6 6 C 1.47101 * 120.00055 * 172.83753 * 5 3 2 7 7 O 1.21614 * 120.00536 * 354.00991 * 6 5 3 8 8 N 1.34776 * 120.00081 * 174.00760 * 6 5 3 9 9 C 1.46506 * 120.00392 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47217 * 180.02562 * 9 8 6 11 11 H 1.09000 * 109.50471 * 305.07990 * 10 9 8 12 12 C 1.53092 * 109.50470 * 185.00160 * 10 9 8 13 13 N 1.47019 * 109.25978 * 183.21363 * 12 10 9 14 14 C 1.46901 * 111.00358 * 182.38741 * 13 12 10 15 15 C 1.50700 * 109.47341 * 169.99961 * 14 13 12 16 16 O 1.21293 * 119.99743 * 0.02562 * 15 14 13 17 17 N 1.34767 * 119.99901 * 180.02562 * 15 14 13 18 18 C 1.37103 * 119.99751 * 180.02562 * 17 15 14 19 19 H 1.07996 * 119.99899 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99778 * 180.02562 * 18 17 15 21 21 N 1.31403 * 120.00226 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99848 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46848 * 59.99883 * 22 20 18 24 24 H 1.48499 * 109.47125 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47031 * 300.00202 * 22 20 18 26 26 C 1.47015 * 110.74981 * 58.61446 * 13 12 10 27 27 C 1.53098 * 109.25839 * 301.38547 * 26 13 12 28 28 O 1.43005 * 109.50905 * 65.21472 * 10 9 8 29 29 H 1.08999 * 109.47203 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47252 * 300.00036 * 1 2 3 31 31 H 1.08994 * 109.47660 * 60.00084 * 1 2 3 32 32 H 1.09001 * 109.47252 * 239.99964 * 2 1 3 33 33 H 1.09000 * 109.47544 * 119.99489 * 2 1 3 34 34 H 1.09001 * 109.47191 * 264.39213 * 4 3 2 35 35 H 1.09003 * 109.47234 * 24.38974 * 4 3 2 36 36 H 1.08999 * 109.47271 * 144.39202 * 4 3 2 37 37 H 1.07998 * 120.00069 * 352.83949 * 5 3 2 38 38 H 0.97002 * 119.99789 * 0.02562 * 8 6 5 39 39 H 1.09000 * 109.46843 * 59.99606 * 9 8 6 40 40 H 1.08998 * 109.46523 * 300.00251 * 9 8 6 41 41 H 1.09001 * 109.50887 * 303.14439 * 12 10 9 42 42 H 1.09002 * 109.51512 * 63.23269 * 12 10 9 43 43 H 1.09003 * 109.46957 * 290.00366 * 14 13 12 44 44 H 1.08999 * 109.46930 * 50.00090 * 14 13 12 45 45 H 0.96998 * 120.00625 * 0.02562 * 17 15 14 46 46 H 0.97004 * 120.00047 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.51002 * 61.32026 * 26 13 12 48 48 H 1.09000 * 109.50779 * 181.41065 * 26 13 12 49 49 H 1.08997 * 109.51084 * 176.78770 * 27 26 13 50 50 H 1.09005 * 109.50417 * 296.87594 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.1761 2.1691 -1.3002 5 6 2.3485 2.0144 1.1473 6 6 2.9855 3.3403 1.1383 7 8 3.3221 3.8462 0.0849 8 7 3.1961 3.9946 2.2976 9 6 3.8300 5.3154 2.2887 10 6 3.9512 5.8326 3.7235 11 1 2.9697 5.8239 4.1976 12 6 4.4980 7.2625 3.7069 13 7 4.6849 7.7263 5.0894 14 6 5.1561 9.1173 5.1190 15 6 5.1018 9.6362 6.5328 16 8 4.7096 8.9177 7.4278 17 7 5.4890 10.8985 6.8026 18 6 5.4401 11.3704 8.0890 19 1 5.0909 10.7306 8.8859 20 6 5.8388 12.6721 8.3671 21 7 6.2632 13.4507 7.3973 22 14 5.7714 13.3153 10.1196 23 1 6.6411 12.4806 10.9869 24 1 6.2472 14.7217 10.1494 25 1 4.3732 13.2546 10.6158 26 6 5.6081 6.8418 5.8152 27 6 5.0501 5.4162 5.8106 28 8 4.8455 4.9940 4.4596 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.2045 2.0905 -1.6528 35 1 1.5036 1.7398 -2.0428 36 1 1.9243 3.2183 -1.1454 37 1 2.1378 1.5229 2.0856 38 1 2.9280 3.5910 3.1379 39 1 3.2229 6.0058 1.7032 40 1 4.8228 5.2388 1.8454 41 1 5.4546 7.2803 3.1846 42 1 3.7919 7.9165 3.1953 43 1 6.1827 9.1610 4.7550 44 1 4.5185 9.7305 4.4822 45 1 5.8023 11.4733 6.0868 46 1 6.5419 14.3593 7.5916 47 1 6.5825 6.8528 5.3266 48 1 5.7125 7.1891 6.8431 49 1 5.7585 4.7464 6.2980 50 1 4.1012 5.3950 6.3468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482187667.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:48 Heat of formation + Delta-G solvation = -125.411592 kcal Electronic energy + Delta-G solvation = -28922.807896 eV Core-core repulsion = 24756.292951 eV Total energy + Delta-G solvation = -4166.514946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20263 -40.66506 -39.75277 -37.29642 -36.69655 -35.81945 -35.71573 -33.29050 -32.77505 -31.73479 -30.42133 -29.14222 -27.79912 -26.64823 -25.19997 -24.89094 -23.55541 -22.01956 -21.40081 -21.02216 -19.90133 -19.60963 -18.03410 -17.93237 -17.49378 -17.14127 -16.94388 -16.58108 -16.41669 -16.07344 -15.88332 -15.64675 -15.55314 -15.37258 -15.12509 -14.87591 -14.67836 -14.50260 -14.13767 -13.94378 -13.56535 -13.48706 -13.45716 -13.21195 -13.01623 -12.99546 -12.86089 -12.59370 -12.43763 -12.36172 -12.26275 -12.22871 -12.12583 -11.73631 -11.61075 -11.43077 -10.84101 -10.61657 -10.27224 -10.21604 -10.00601 -9.82104 -9.34012 -8.46515 -5.95354 0.42991 1.39690 1.41878 1.52586 2.04060 2.15570 2.29954 2.32762 2.63175 2.70138 3.20129 3.33450 3.72224 3.78772 3.88538 3.92908 3.98533 4.07566 4.16379 4.27288 4.31955 4.35600 4.41878 4.45307 4.46804 4.49902 4.57255 4.61235 4.64217 4.67303 4.78988 4.86004 4.88175 4.94545 5.01679 5.03868 5.11450 5.16006 5.38333 5.40586 5.45666 5.61455 5.64028 5.77079 5.95087 6.04790 6.14251 6.59822 6.61848 7.12412 7.29616 7.55703 8.10898 8.70527 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034410 B = 0.001603 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.523251 B =17460.230891 C =17759.282222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.024 4.024 4 C -0.123 4.123 5 C -0.243 4.243 6 C 0.537 3.463 7 O -0.580 6.580 8 N -0.714 5.714 9 C 0.139 3.861 10 C 0.091 3.909 11 H 0.079 0.921 12 C 0.026 3.974 13 N -0.528 5.528 14 C 0.057 3.943 15 C 0.442 3.558 16 O -0.613 6.613 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.081 0.919 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.272 1.272 26 C 0.015 3.985 27 C 0.077 3.923 28 O -0.386 6.386 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.149 0.851 38 H 0.413 0.587 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.113 0.887 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.035 0.965 48 H 0.079 0.921 49 H 0.117 0.883 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.039 -23.857 -15.208 29.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.026 4.026 4 C -0.179 4.179 5 C -0.264 4.264 6 C 0.329 3.671 7 O -0.463 6.463 8 N -0.365 5.365 9 C 0.014 3.986 10 C 0.033 3.967 11 H 0.097 0.903 12 C -0.103 4.103 13 N -0.254 5.254 14 C -0.074 4.074 15 C 0.229 3.771 16 O -0.499 6.499 17 N -0.210 5.210 18 C -0.463 4.463 19 H 0.099 0.901 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.113 4.113 27 C 0.000 4.000 28 O -0.305 6.305 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.167 0.833 38 H 0.250 0.750 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.123 0.877 43 H 0.083 0.917 44 H 0.131 0.869 45 H 0.229 0.771 46 H 0.087 0.913 47 H 0.053 0.947 48 H 0.097 0.903 49 H 0.134 0.866 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.351 -23.929 -15.171 29.538 hybrid contribution 1.009 1.332 0.785 1.846 sum -7.341 -22.598 -14.386 27.776 Atomic orbital electron populations 1.21726 0.93575 1.02877 1.02234 1.20826 0.97077 0.90864 1.04425 1.22808 0.89174 0.95839 0.94739 1.21077 1.02023 1.00292 0.94534 1.22454 1.08137 0.95426 1.00340 1.19030 0.78760 0.86291 0.83027 1.90750 1.53707 1.70134 1.31733 1.45738 1.61833 1.19358 1.09597 1.21185 0.98655 0.84781 0.93981 1.22290 0.93847 0.88675 0.91894 0.90348 1.22781 1.01783 0.96860 0.88843 1.61750 1.48522 1.00869 1.14219 1.21751 1.00963 0.90618 0.94061 1.20662 0.82514 0.82434 0.91466 1.90452 1.52462 1.57818 1.49166 1.41925 1.57882 1.11738 1.09501 1.19636 1.43017 0.97385 0.86288 0.90150 1.26029 0.95990 0.95659 1.03510 1.69665 1.43718 1.08895 1.33847 0.84993 0.78778 0.77379 0.77213 1.19694 1.19605 1.19710 1.22878 0.93511 0.94447 1.00460 1.22621 1.01283 0.93227 0.82832 1.87956 1.66330 1.51788 1.24443 0.90809 0.92611 0.92606 0.89394 0.89540 0.91427 0.90862 0.91489 0.83295 0.75027 0.89216 0.91790 0.93344 0.87721 0.91652 0.86862 0.77074 0.91329 0.94661 0.90316 0.86552 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 71.98 0.71 -0.33 16 2 C -0.09 -0.78 6.08 29.85 0.18 -0.60 16 3 C -0.02 -0.33 5.36 -17.62 -0.09 -0.43 16 4 C -0.12 -2.04 8.48 71.24 0.60 -1.44 16 5 C -0.24 -3.71 9.60 23.43 0.22 -3.49 16 6 C 0.54 11.43 7.61 86.57 0.66 12.09 16 7 O -0.58 -16.18 13.28 -4.07 -0.05 -16.23 16 8 N -0.71 -13.06 5.50 -466.71 -2.57 -15.63 16 9 C 0.14 2.73 5.34 86.38 0.46 3.19 16 10 C 0.09 1.93 2.84 30.62 0.09 2.02 16 11 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 12 C 0.03 0.60 4.93 86.31 0.43 1.03 16 13 N -0.53 -16.69 4.46 -899.76 -4.01 -20.70 16 14 C 0.06 1.95 5.45 85.56 0.47 2.42 16 15 C 0.44 20.67 7.49 87.66 0.66 21.33 16 16 O -0.61 -32.86 13.92 -3.07 -0.04 -32.90 16 17 N -0.57 -29.11 5.29 -306.99 -1.62 -30.74 16 18 C -0.33 -18.76 9.68 84.04 0.81 -17.94 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.76 16 20 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 21 N -0.92 -49.43 13.05 21.66 0.28 -49.15 16 22 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 C 0.02 0.48 5.29 86.31 0.46 0.93 16 27 C 0.08 1.94 7.01 72.01 0.50 2.44 16 28 O -0.39 -9.18 10.42 -148.98 -1.55 -10.73 16 29 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.09 0.56 8.03 -2.39 -0.02 0.54 16 34 H 0.07 1.27 8.04 -2.39 -0.02 1.25 16 35 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 36 H 0.07 1.45 6.14 -2.39 -0.01 1.43 16 37 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 38 H 0.41 5.95 8.46 -92.71 -0.78 5.17 16 39 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.10 2.11 8.09 -2.39 -0.02 2.09 16 43 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 44 H 0.11 3.37 8.04 -2.39 -0.02 3.35 16 45 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 46 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 47 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.08 3.07 5.88 -2.39 -0.01 3.06 16 49 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -70.70 407.21 -1.49 -72.19 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: -0.57 Total: 38.23 kcal Atomic # 6 Polarization: 14.42 SS G_CDS: 6.63 Total: 21.05 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -7.92 Total: -116.22 kcal Atomic # 8 Polarization: -58.21 SS G_CDS: -1.65 Total: -59.86 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -70.70 -1.49 -72.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482187667.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.222 kcal (2) G-P(sol) polarization free energy of solvation -70.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds