Wall clock time and date at job start Sat Apr 11 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.67590 * 2 1 4 4 O 1.21274 * 119.99760 * 120.49667 * 3 2 1 5 5 N 1.34774 * 119.99438 * 300.22750 * 3 2 1 6 6 C 1.46507 * 119.99592 * 180.27199 * 5 3 2 7 7 C 1.52991 * 109.47236 * 176.55036 * 6 5 3 8 8 N 1.46505 * 109.54372 * 54.54744 * 7 6 5 9 9 C 1.36935 * 119.99738 * 62.01094 * 8 7 6 10 10 H 1.07992 * 120.00069 * 354.01394 * 9 8 7 11 11 C 1.38816 * 119.99797 * 174.01201 * 9 8 7 12 12 N 1.31623 * 119.99914 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99925 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47260 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46990 * 119.99944 * 13 11 9 16 16 H 1.48500 * 109.46661 * 239.99704 * 13 11 9 17 17 C 1.53178 * 109.54675 * 294.36964 * 7 6 5 18 18 C 1.53104 * 109.16108 * 183.23952 * 17 7 6 19 19 O 1.42902 * 109.48256 * 57.47429 * 18 17 7 20 20 C 1.42906 * 114.10188 * 298.88756 * 19 18 17 21 21 C 1.53099 * 109.41083 * 61.15917 * 20 19 18 22 22 C 1.53340 * 109.67598 * 120.50237 * 2 1 3 23 23 C 1.52925 * 108.67652 * 52.23427 * 22 2 1 24 24 N 1.45753 * 110.48469 * 50.75135 * 23 22 2 25 25 C 1.33345 * 124.11105 * 340.95424 * 24 23 22 26 26 O 1.21282 * 118.25026 * 182.17159 * 25 24 23 27 27 C 1.50185 * 123.51049 * 2.17523 * 25 24 23 28 28 H 1.09003 * 109.47052 * 59.99652 * 1 2 3 29 29 H 1.08993 * 109.47600 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46760 * 300.00325 * 1 2 3 31 31 H 0.96998 * 120.00959 * 0.26723 * 5 3 2 32 32 H 1.09004 * 109.47021 * 296.55272 * 6 5 3 33 33 H 1.09004 * 109.46594 * 56.55214 * 6 5 3 34 34 H 0.96996 * 119.99718 * 242.01258 * 8 7 6 35 35 H 0.96997 * 119.99489 * 179.97438 * 12 11 9 36 36 H 1.09000 * 109.52353 * 303.05848 * 17 7 6 37 37 H 1.09004 * 109.51798 * 63.24384 * 17 7 6 38 38 H 1.09001 * 109.40484 * 297.49436 * 18 17 7 39 39 H 1.08997 * 109.49231 * 177.50834 * 18 17 7 40 40 H 1.09006 * 109.47721 * 301.18221 * 20 19 18 41 41 H 1.08997 * 109.48415 * 181.14507 * 20 19 18 42 42 H 1.09000 * 109.51773 * 182.48526 * 21 20 19 43 43 H 1.08991 * 109.52143 * 62.29811 * 21 20 19 44 44 H 1.09003 * 109.60916 * 171.99347 * 22 2 1 45 45 H 1.09001 * 109.60196 * 292.48350 * 22 2 1 46 46 H 1.09003 * 109.30110 * 171.06755 * 23 22 2 47 47 H 1.09006 * 109.29983 * 290.65204 * 23 22 2 48 48 H 0.97002 * 117.94313 * 160.92049 * 24 23 22 49 49 H 1.08999 * 109.41157 * 222.31979 * 27 25 24 50 50 H 1.08997 * 109.38488 * 102.57216 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0374 1.4191 0.0000 4 8 2.7435 1.8105 0.9050 5 7 1.7110 2.2513 -1.0085 6 6 2.2091 3.6291 -1.0116 7 6 1.7676 4.3282 -2.2989 8 7 0.3129 4.2247 -2.4386 9 6 -0.5071 4.7904 -1.4990 10 1 -0.0845 5.2279 -0.6067 11 6 -1.8815 4.8014 -1.6936 12 7 -2.3964 4.2686 -2.7815 13 14 -3.0000 5.5736 -0.4122 14 1 -2.1799 6.0990 0.7087 15 1 -3.7660 6.6859 -1.0296 16 1 -3.9435 4.5491 0.1031 17 6 2.4463 3.6646 -3.5011 18 6 2.0624 4.4211 -4.7756 19 8 2.4400 5.7934 -4.6474 20 6 1.7985 6.4768 -3.5687 21 6 2.1736 5.8042 -2.2455 22 6 2.0463 -0.7329 1.2440 23 6 1.3757 -2.1053 1.3174 24 7 1.5041 -2.8044 0.0450 25 6 1.7825 -2.2047 -1.1130 26 8 1.8254 -2.8850 -2.1161 27 6 2.0461 -0.7317 -1.2416 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.1463 1.9383 -1.7324 32 1 1.8057 4.1632 -0.1513 33 1 3.2978 3.6219 -0.9571 34 1 -0.0693 3.7556 -3.1966 35 1 -3.3568 4.2760 -2.9172 36 1 3.5282 3.6965 -3.3721 37 1 2.1181 2.6280 -3.5783 38 1 0.9850 4.3531 -4.9265 39 1 2.5775 3.9806 -5.6292 40 1 0.7176 6.4356 -3.7038 41 1 2.1236 7.5170 -3.5527 42 1 1.6505 6.2965 -1.4256 43 1 3.2497 5.8806 -2.0903 44 1 3.1269 -0.8572 1.1733 45 1 1.7997 -0.1573 2.1362 46 1 1.8485 -2.6958 2.1023 47 1 0.3184 -1.9777 1.5499 48 1 1.3795 -3.7664 0.0403 49 1 1.5367 -0.3484 -2.1257 50 1 3.1183 -0.5634 -1.3414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484185601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:54 Heat of formation + Delta-G solvation = -116.959490 kcal Electronic energy + Delta-G solvation = -32072.620947 eV Core-core repulsion = 27906.472512 eV Total energy + Delta-G solvation = -4166.148435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.05370 -39.60176 -38.84792 -36.72191 -35.80079 -34.09773 -33.37736 -32.15971 -30.65932 -29.85114 -29.22217 -28.03392 -26.88103 -24.68512 -24.13306 -23.28175 -22.87373 -21.74251 -20.05634 -18.75064 -18.44437 -17.70388 -17.22656 -16.59615 -16.42794 -15.73955 -15.64832 -15.45662 -15.35246 -15.05409 -14.79177 -14.47998 -14.33220 -13.98073 -13.78056 -13.55803 -13.42219 -13.26983 -12.71377 -12.69057 -12.22952 -12.13588 -12.03628 -11.85160 -11.76013 -11.57777 -11.49055 -11.07735 -10.99095 -10.96949 -10.92967 -10.80680 -10.37705 -10.24304 -10.05121 -9.79609 -9.73515 -9.34512 -9.27344 -9.25009 -8.81898 -8.55012 -7.15577 -5.92347 -3.23107 2.50519 2.88180 3.11013 3.32766 3.40841 3.41799 3.48344 4.32164 4.37191 4.42581 4.46295 4.55506 4.60915 4.96514 5.02203 5.11829 5.16725 5.21313 5.28917 5.33474 5.46147 5.48713 5.51759 5.53265 5.62326 5.70913 5.72453 5.76481 5.85043 5.96273 5.98501 6.06294 6.09112 6.17463 6.23406 6.29115 6.39319 6.50258 6.53932 6.57248 6.69347 6.76213 6.92494 7.12498 7.60136 7.71091 7.92402 8.05148 8.24617 8.54732 9.37522 9.87740 10.24598 11.29203 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.004125 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.694834 B = 6785.595825 C = 8000.655179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 C 0.521 3.479 4 O -0.552 6.552 5 N -0.695 5.695 6 C 0.117 3.883 7 C 0.189 3.811 8 N -0.712 5.712 9 C -0.236 4.236 10 H 0.070 0.930 11 C -0.005 4.005 12 N -0.928 5.928 13 Si 0.900 3.100 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.293 1.293 17 C -0.151 4.151 18 C 0.066 3.934 19 O -0.393 6.393 20 C 0.070 3.930 21 C -0.152 4.152 22 C -0.111 4.111 23 C 0.108 3.892 24 N -0.720 5.720 25 C 0.528 3.472 26 O -0.557 6.557 27 C -0.124 4.124 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.403 0.597 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.398 0.602 49 H 0.108 0.892 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.437 -8.925 4.529 13.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C 0.306 3.694 4 O -0.431 6.431 5 N -0.345 5.345 6 C -0.009 4.009 7 C 0.096 3.904 8 N -0.355 5.355 9 C -0.367 4.367 10 H 0.088 0.912 11 C -0.201 4.201 12 N -0.576 5.576 13 Si 0.731 3.269 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.220 1.220 17 C -0.189 4.189 18 C -0.011 4.011 19 O -0.312 6.312 20 C -0.007 4.007 21 C -0.192 4.192 22 C -0.149 4.149 23 C -0.016 4.016 24 N -0.372 5.372 25 C 0.315 3.685 26 O -0.436 6.436 27 C -0.164 4.164 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.239 0.761 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.098 0.902 47 H 0.090 0.910 48 H 0.234 0.766 49 H 0.126 0.874 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.020 -8.520 4.643 13.248 hybrid contribution -1.472 -0.247 0.549 1.591 sum 7.548 -8.767 5.192 12.681 Atomic orbital electron populations 1.21973 0.91430 1.02758 1.04253 1.20890 0.98115 0.93191 0.96218 1.20112 0.80464 0.86698 0.82131 1.90660 1.38637 1.77568 1.36240 1.45767 1.51441 1.12318 1.24961 1.21833 0.96968 0.81637 1.00455 1.19836 0.86409 0.92822 0.91287 1.42495 0.97899 1.65857 1.29216 1.19087 0.87716 1.30823 0.99037 0.91172 1.24689 0.96811 1.01275 0.97344 1.69652 1.11432 1.49902 1.26585 0.86232 0.81059 0.78711 0.80854 1.20598 1.21879 1.21975 1.22353 1.00654 0.99754 0.96151 1.22459 1.00269 0.81977 0.96411 1.87799 1.68672 1.23080 1.51664 1.22453 0.98353 0.94452 0.85414 1.22446 0.99836 0.97801 0.99115 1.21725 1.00988 0.93976 0.98222 1.21500 1.01434 0.93707 0.84985 1.45474 1.72124 1.11695 1.07922 1.19974 0.75389 0.90468 0.82650 1.90770 1.52290 1.65158 1.35390 1.21742 1.04289 0.91181 0.99191 0.90772 0.91596 0.91240 0.76071 0.91635 0.92711 0.78070 0.93483 0.91242 0.91291 0.92199 0.90056 0.91234 0.90426 0.90465 0.92683 0.90392 0.88658 0.90242 0.91000 0.76638 0.87368 0.87795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 7.72 37.16 0.29 -1.46 16 2 C -0.08 -0.95 0.63 -155.44 -0.10 -1.04 16 3 C 0.52 7.89 6.47 -10.98 -0.07 7.82 16 4 O -0.55 -10.01 15.90 5.56 0.09 -9.92 16 5 N -0.70 -10.72 4.94 -60.29 -0.30 -11.02 16 6 C 0.12 1.96 4.36 -4.04 -0.02 1.94 16 7 C 0.19 3.16 0.41 -131.64 -0.05 3.11 16 8 N -0.71 -14.47 3.60 -47.06 -0.17 -14.64 16 9 C -0.24 -5.57 8.67 -15.06 -0.13 -5.70 16 10 H 0.07 1.69 6.78 -52.49 -0.36 1.34 16 11 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 12 N -0.93 -25.10 13.07 55.49 0.73 -24.37 16 13 Si 0.90 20.91 29.55 -169.99 -5.02 15.89 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 C -0.15 -2.21 4.80 -26.59 -0.13 -2.34 16 18 C 0.07 1.02 6.67 37.21 0.25 1.26 16 19 O -0.39 -6.73 10.77 -35.23 -0.38 -7.11 16 20 C 0.07 1.19 6.68 37.21 0.25 1.44 16 21 C -0.15 -2.52 4.79 -26.59 -0.13 -2.65 16 22 C -0.11 -1.10 4.34 -26.59 -0.12 -1.21 16 23 C 0.11 0.80 6.39 -4.48 -0.03 0.77 16 24 N -0.72 -6.58 5.24 -61.38 -0.32 -6.91 16 25 C 0.53 6.50 7.15 -11.87 -0.08 6.41 16 26 O -0.56 -9.03 17.78 5.56 0.10 -8.93 16 27 C -0.12 -1.41 4.65 -28.09 -0.13 -1.54 16 28 H 0.07 1.00 7.56 -51.93 -0.39 0.60 16 29 H 0.07 0.69 5.90 -51.93 -0.31 0.39 16 30 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 31 H 0.40 6.12 6.60 -40.82 -0.27 5.85 16 32 H 0.07 1.25 7.46 -51.93 -0.39 0.87 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.38 8.47 6.82 -40.82 -0.28 8.19 16 35 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.94 7.40 -51.93 -0.38 0.56 16 38 H 0.06 1.03 7.15 -51.93 -0.37 0.66 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.38 7.75 -51.93 -0.40 0.98 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.08 1.37 7.20 -51.93 -0.37 1.00 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 45 H 0.09 0.99 7.90 -51.93 -0.41 0.58 16 46 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.49 6.85 -51.93 -0.36 0.14 16 48 H 0.40 3.13 8.80 -40.82 -0.36 2.77 16 49 H 0.11 1.24 7.93 -51.93 -0.41 0.82 16 50 H 0.10 1.13 8.09 -51.93 -0.42 0.71 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -30.38 385.03 -7.77 -38.15 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: -8.00 Total: 16.47 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -0.30 Total: 6.59 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.06 Total: -56.94 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.19 Total: -25.96 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.38 -7.77 -38.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484185601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.805 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds