Wall clock time and date at job start Sat Apr 11 2020 05:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00280 * 2 1 4 4 C 1.53003 * 109.47147 * 124.99954 * 3 2 1 5 5 C 1.53000 * 109.47128 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47111 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99790 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99779 * 179.97438 * 6 5 4 9 9 C 1.47154 * 120.98376 * 0.02562 * 8 6 5 10 10 C 1.53291 * 108.38266 * 230.51416 * 9 8 6 11 11 O 1.42957 * 109.22684 * 307.70060 * 10 9 8 12 12 C 1.42959 * 114.16741 * 62.57852 * 11 10 9 13 13 H 1.08999 * 109.55248 * 57.37726 * 12 11 10 14 14 C 1.53006 * 109.51200 * 177.49556 * 12 11 10 15 15 N 1.46898 * 109.47138 * 299.75017 * 14 12 11 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00058 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00498 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99920 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47208 * 89.99447 * 24 22 20 26 26 H 1.48492 * 109.47264 * 210.00335 * 24 22 20 27 27 H 1.48508 * 109.46806 * 329.99819 * 24 22 20 28 28 C 1.47150 * 120.97843 * 179.97438 * 8 6 5 29 29 H 1.08001 * 119.99642 * 179.97438 * 1 2 3 30 30 H 1.07992 * 119.99869 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00463 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.46630 * 5.00387 * 3 2 1 33 33 H 1.08998 * 109.47820 * 245.00537 * 3 2 1 34 34 H 1.08999 * 109.47106 * 60.00152 * 4 3 2 35 35 H 1.09008 * 109.47001 * 300.00450 * 4 3 2 36 36 H 1.09003 * 109.47167 * 60.00115 * 5 4 3 37 37 H 1.08999 * 109.46901 * 299.99894 * 5 4 3 38 38 H 1.08995 * 109.68022 * 350.23934 * 9 8 6 39 39 H 1.09002 * 109.67903 * 110.75695 * 9 8 6 40 40 H 1.08996 * 109.51283 * 67.62737 * 10 9 8 41 41 H 1.08997 * 109.50907 * 187.77594 * 10 9 8 42 42 H 1.08997 * 109.46770 * 179.74963 * 14 12 11 43 43 H 1.08995 * 109.47019 * 59.75177 * 14 12 11 44 44 H 1.00904 * 110.99913 * 303.95145 * 15 14 12 45 45 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 46 46 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 47 47 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 48 48 H 0.97002 * 120.00283 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.68468 * 9.76826 * 28 8 6 50 50 H 1.08995 * 109.71556 * 249.22628 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7997 2.6582 1.1820 6 6 4.7562 2.6860 2.3463 7 8 4.8197 1.7393 3.1016 8 7 5.5410 3.7630 2.5480 9 6 5.4813 4.9236 1.6454 10 6 6.9090 5.2692 1.2072 11 8 7.7364 5.4071 2.3648 12 6 7.8616 4.2127 3.1404 13 1 8.2551 3.4113 2.5151 14 6 8.8141 4.4614 4.3117 15 7 10.1351 4.8444 3.7957 16 6 11.0782 5.0911 4.8947 17 6 12.4193 5.4800 4.3280 18 8 12.5741 5.5457 3.1268 19 7 13.4467 5.7548 5.1560 20 6 14.6666 6.1091 4.6404 21 1 14.8044 6.1676 3.5708 22 6 15.7256 6.3930 5.4939 23 7 16.8951 6.7321 4.9998 24 14 15.4870 6.2925 7.3440 25 1 15.8041 4.9187 7.8101 26 1 16.3900 7.2631 8.0130 27 1 14.0769 6.6159 7.6794 28 6 6.4821 3.8133 3.6781 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 3.7400 0.5065 1.0921 35 1 2.4773 1.2354 2.1131 36 1 3.0945 3.4846 1.2718 37 1 4.3575 2.7561 0.2507 38 1 4.8782 4.6782 0.7713 39 1 5.0415 5.7730 2.1682 40 1 7.2985 4.4720 0.5741 41 1 6.9022 6.2064 0.6508 42 1 8.9055 3.5517 4.9050 43 1 8.4210 5.2641 4.9355 44 1 10.4929 4.1447 3.1629 45 1 10.7010 5.8981 5.5230 46 1 11.1853 4.1855 5.4918 47 1 13.3227 5.7026 6.1166 48 1 17.6345 6.9299 5.5957 49 1 6.5419 2.8326 4.1501 50 1 6.1438 4.5508 4.4058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484687951.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:12 Heat of formation + Delta-G solvation = -92.292657 kcal Electronic energy + Delta-G solvation = -28604.315106 eV Core-core repulsion = 24439.236305 eV Total energy + Delta-G solvation = -4165.078801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.74801 -38.89468 -38.35415 -36.44808 -35.74293 -34.90864 -33.89269 -33.00549 -31.96347 -31.59486 -28.90733 -28.31773 -26.78969 -25.06610 -23.75039 -23.17766 -22.25775 -21.36838 -20.34037 -19.35350 -19.34902 -18.33622 -17.61960 -17.08304 -16.55675 -16.31634 -16.03005 -15.62829 -15.53004 -15.22469 -15.04482 -14.78730 -14.52568 -14.20672 -14.02642 -13.88550 -13.65953 -13.39651 -13.23141 -12.92223 -12.79296 -12.61755 -12.29532 -12.14531 -12.13356 -11.97463 -11.79920 -11.64927 -11.44892 -11.35071 -11.18122 -11.13944 -10.87407 -10.57578 -10.33084 -10.11240 -9.95255 -9.78236 -9.54701 -8.90053 -8.55725 -8.16692 -8.08849 -6.28754 -3.80051 1.82578 2.23092 2.46037 3.04774 3.08441 3.16731 3.49474 3.77563 3.95994 4.04402 4.12528 4.25372 4.44289 4.46609 4.54218 4.68985 4.70712 4.75406 4.76996 4.87393 4.91437 4.97255 5.01877 5.06770 5.13071 5.23144 5.26545 5.29308 5.31534 5.39087 5.45722 5.48245 5.52611 5.66197 5.66453 5.77549 5.83258 5.85440 5.96555 5.97840 6.18025 6.31092 6.92724 6.96452 7.12181 7.58697 7.61224 7.75606 8.17188 8.62673 8.97672 9.45141 9.85967 10.84464 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032802 B = 0.001539 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.407554 B =18187.676293 C =18455.041199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.095 4.095 4 C -0.100 4.100 5 C -0.140 4.140 6 C 0.515 3.485 7 O -0.539 6.539 8 N -0.617 5.617 9 C 0.070 3.930 10 C 0.045 3.955 11 O -0.349 6.349 12 C 0.084 3.916 13 H 0.062 0.938 14 C 0.068 3.932 15 N -0.658 5.658 16 C 0.048 3.952 17 C 0.451 3.549 18 O -0.563 6.563 19 N -0.592 5.592 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.042 3.958 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.083 3.917 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.055 0.945 41 H 0.108 0.892 42 H 0.045 0.955 43 H 0.082 0.918 44 H 0.349 0.651 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.101 0.899 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.304 -8.436 -5.956 33.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.138 4.138 5 C -0.180 4.180 6 C 0.304 3.696 7 O -0.416 6.416 8 N -0.352 5.352 9 C -0.053 4.053 10 C -0.033 4.033 11 O -0.267 6.267 12 C 0.024 3.976 13 H 0.080 0.920 14 C -0.062 4.062 15 N -0.291 5.291 16 C -0.085 4.085 17 C 0.237 3.763 18 O -0.445 6.445 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.040 4.040 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.126 0.874 42 H 0.063 0.937 43 H 0.101 0.899 44 H 0.169 0.831 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.119 0.881 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -32.003 -7.999 -6.358 33.594 hybrid contribution 0.035 -1.020 1.727 2.006 sum -31.968 -9.019 -4.631 33.537 Atomic orbital electron populations 1.23861 0.95979 1.01852 1.01654 1.22957 0.96040 0.98579 0.99429 1.20798 0.98167 0.95587 0.98717 1.21304 0.97756 0.96067 0.98711 1.21736 0.98103 1.00846 0.97277 1.20785 0.80798 0.81457 0.86539 1.90708 1.68187 1.34998 1.47675 1.48182 1.40188 1.17495 1.29307 1.22552 0.99414 0.88825 0.94480 1.22961 0.88628 1.02957 0.88757 1.88194 1.68176 1.32767 1.37518 1.22472 0.93397 0.88265 0.93443 0.91966 1.21916 0.89775 0.99999 0.94530 1.59948 1.00957 1.51269 1.16877 1.21720 0.92696 1.00619 0.93430 1.19695 0.84977 0.84196 0.87458 1.90568 1.83303 1.55890 1.14691 1.42202 1.10903 1.62790 1.07234 1.19438 0.84527 1.42991 0.96384 0.86295 1.25028 0.95153 0.97466 0.98478 1.69621 1.01431 1.45729 1.35468 0.86673 0.78398 0.78869 0.85459 1.19695 1.20187 1.19456 1.22301 0.88835 1.04058 0.88837 0.88548 0.88634 0.87322 0.91431 0.90823 0.90942 0.91029 0.88781 0.88705 0.88804 0.90196 0.92694 0.87383 0.93702 0.89946 0.83104 0.89371 0.93812 0.79698 0.91648 0.88108 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.05 14.32 29.01 0.42 -0.63 16 2 C -0.15 -0.87 9.52 -36.03 -0.34 -1.21 16 3 C -0.10 -0.47 5.66 -27.88 -0.16 -0.63 16 4 C -0.10 -0.65 4.49 -26.73 -0.12 -0.77 16 5 C -0.14 -0.79 4.07 -27.88 -0.11 -0.90 16 6 C 0.52 4.88 7.71 -10.98 -0.08 4.80 16 7 O -0.54 -7.17 15.45 5.56 0.09 -7.09 16 8 N -0.62 -5.35 3.02 -172.25 -0.52 -5.87 16 9 C 0.07 0.43 6.54 -3.53 -0.02 0.41 16 10 C 0.04 0.36 6.98 37.31 0.26 0.63 16 11 O -0.35 -4.23 10.25 -35.23 -0.36 -4.59 16 12 C 0.08 0.91 2.99 -26.55 -0.08 0.83 16 13 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 14 C 0.07 0.79 5.38 -3.82 -0.02 0.77 16 15 N -0.66 -10.42 6.00 -115.05 -0.69 -11.11 16 16 C 0.05 0.80 6.17 -4.97 -0.03 0.77 16 17 C 0.45 10.39 7.82 -10.99 -0.09 10.31 16 18 O -0.56 -15.38 15.78 5.55 0.09 -15.29 16 19 N -0.59 -14.25 5.09 -10.96 -0.06 -14.31 16 20 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 21 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.96 13.96 55.50 0.77 -25.19 16 24 Si 0.88 19.50 27.74 -169.99 -4.71 14.78 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 28 C 0.08 0.79 5.93 -3.51 -0.02 0.77 16 29 H 0.10 0.44 8.06 -52.49 -0.42 0.02 16 30 H 0.10 0.44 7.84 -52.49 -0.41 0.03 16 31 H 0.11 0.59 8.06 -52.48 -0.42 0.17 16 32 H 0.07 0.28 7.79 -51.93 -0.40 -0.12 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 35 H 0.07 0.56 8.10 -51.92 -0.42 0.14 16 36 H 0.09 0.36 8.02 -51.93 -0.42 -0.05 16 37 H 0.09 0.38 7.66 -51.93 -0.40 -0.02 16 38 H 0.09 0.32 6.05 -51.93 -0.31 0.00 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.35 5.75 8.43 -39.29 -0.33 5.42 16 45 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.10 1.04 7.08 -51.93 -0.37 0.68 16 50 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 409.31 15.07 6.17 6.17 Total: -1.00 -36.28 409.31 -8.23 -44.50 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -8.35 Total: 10.67 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -0.65 Total: 7.33 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.49 Total: -56.48 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.19 Total: -26.97 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.28 -8.23 -44.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484687951.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.789 kcal (2) G-P(sol) polarization free energy of solvation -36.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds