Wall clock time and date at job start Sat Apr 11 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00280 * 2 1 4 4 C 1.53003 * 109.47147 * 124.99954 * 3 2 1 5 5 C 1.53000 * 109.47128 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47111 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99790 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99779 * 179.97438 * 6 5 4 9 9 C 1.47154 * 120.98376 * 0.02562 * 8 6 5 10 10 C 1.53291 * 108.38266 * 230.51416 * 9 8 6 11 11 O 1.42957 * 109.22684 * 307.70060 * 10 9 8 12 12 C 1.42959 * 114.16741 * 62.57852 * 11 10 9 13 13 H 1.08999 * 109.55248 * 57.37726 * 12 11 10 14 14 C 1.53006 * 109.51200 * 177.49556 * 12 11 10 15 15 N 1.46898 * 109.47138 * 299.75017 * 14 12 11 16 16 C 1.46906 * 110.99888 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47140 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00058 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00498 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99920 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47208 * 89.99447 * 24 22 20 26 26 H 1.48492 * 109.47264 * 210.00335 * 24 22 20 27 27 H 1.48508 * 109.46806 * 329.99819 * 24 22 20 28 28 C 1.47150 * 120.97843 * 179.97438 * 8 6 5 29 29 H 1.08001 * 119.99642 * 179.97438 * 1 2 3 30 30 H 1.07992 * 119.99869 * 359.97438 * 1 2 3 31 31 H 1.08005 * 120.00463 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.46630 * 5.00387 * 3 2 1 33 33 H 1.08998 * 109.47820 * 245.00537 * 3 2 1 34 34 H 1.08999 * 109.47106 * 60.00152 * 4 3 2 35 35 H 1.09008 * 109.47001 * 300.00450 * 4 3 2 36 36 H 1.09003 * 109.47167 * 60.00115 * 5 4 3 37 37 H 1.08999 * 109.46901 * 299.99894 * 5 4 3 38 38 H 1.08995 * 109.68022 * 350.23934 * 9 8 6 39 39 H 1.09002 * 109.67903 * 110.75695 * 9 8 6 40 40 H 1.08996 * 109.51283 * 67.62737 * 10 9 8 41 41 H 1.08997 * 109.50907 * 187.77594 * 10 9 8 42 42 H 1.08997 * 109.46770 * 179.74963 * 14 12 11 43 43 H 1.08995 * 109.47019 * 59.75177 * 14 12 11 44 44 H 1.00904 * 110.99913 * 303.95145 * 15 14 12 45 45 H 1.09004 * 109.47040 * 299.99934 * 16 15 14 46 46 H 1.09000 * 109.47033 * 59.99886 * 16 15 14 47 47 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 48 48 H 0.97002 * 120.00283 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.68468 * 9.76826 * 28 8 6 50 50 H 1.08995 * 109.71556 * 249.22628 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.7997 2.6582 1.1820 6 6 4.7562 2.6860 2.3463 7 8 4.8197 1.7393 3.1016 8 7 5.5410 3.7630 2.5480 9 6 5.4813 4.9236 1.6454 10 6 6.9090 5.2692 1.2072 11 8 7.7364 5.4071 2.3648 12 6 7.8616 4.2127 3.1404 13 1 8.2551 3.4113 2.5151 14 6 8.8141 4.4614 4.3117 15 7 10.1351 4.8444 3.7957 16 6 11.0782 5.0911 4.8947 17 6 12.4193 5.4800 4.3280 18 8 12.5741 5.5457 3.1268 19 7 13.4467 5.7548 5.1560 20 6 14.6666 6.1091 4.6404 21 1 14.8044 6.1676 3.5708 22 6 15.7256 6.3930 5.4939 23 7 16.8951 6.7321 4.9998 24 14 15.4870 6.2925 7.3440 25 1 15.8041 4.9187 7.8101 26 1 16.3900 7.2631 8.0130 27 1 14.0769 6.6159 7.6794 28 6 6.4821 3.8133 3.6781 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5399 0.9353 0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4027 -0.9314 34 1 3.7400 0.5065 1.0921 35 1 2.4773 1.2354 2.1131 36 1 3.0945 3.4846 1.2718 37 1 4.3575 2.7561 0.2507 38 1 4.8782 4.6782 0.7713 39 1 5.0415 5.7730 2.1682 40 1 7.2985 4.4720 0.5741 41 1 6.9022 6.2064 0.6508 42 1 8.9055 3.5517 4.9050 43 1 8.4210 5.2641 4.9355 44 1 10.4929 4.1447 3.1629 45 1 10.7010 5.8981 5.5230 46 1 11.1853 4.1855 5.4918 47 1 13.3227 5.7026 6.1166 48 1 17.6345 6.9299 5.5957 49 1 6.5419 2.8326 4.1501 50 1 6.1438 4.5508 4.4058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484687951.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:11 Heat of formation + Delta-G solvation = -120.761440 kcal Electronic energy + Delta-G solvation = -28605.549605 eV Core-core repulsion = 24439.236305 eV Total energy + Delta-G solvation = -4166.313300 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.45782 -40.30822 -39.56441 -36.92382 -36.86746 -35.93921 -35.66836 -33.76634 -33.55317 -32.71124 -29.71845 -29.17378 -27.82047 -26.37763 -24.89251 -24.04356 -22.95464 -22.12936 -21.27116 -20.75530 -20.25897 -19.97664 -18.32650 -18.01053 -17.62673 -17.16566 -17.00681 -16.87198 -16.46834 -16.19881 -16.11055 -15.88853 -15.42365 -15.21005 -14.96856 -14.87517 -14.77361 -14.47340 -14.31548 -14.18453 -14.08668 -13.42121 -13.35870 -13.20313 -13.06371 -12.85084 -12.69532 -12.55803 -12.44387 -12.41029 -12.19770 -11.97286 -11.76827 -11.64959 -11.61737 -11.50917 -11.13011 -10.83002 -10.43916 -10.24479 -10.18746 -9.61303 -9.29765 -8.40828 -6.01866 1.31200 1.36183 1.41637 1.45393 1.54689 1.82994 1.96409 2.23734 2.70908 2.77040 3.15772 3.34090 3.47772 3.78327 3.83773 3.90081 3.97980 4.04796 4.05103 4.16087 4.25105 4.30356 4.35201 4.35388 4.41142 4.47871 4.55480 4.59914 4.64309 4.65602 4.67110 4.71313 4.84189 4.87506 4.92569 4.99023 5.07293 5.21769 5.29657 5.40385 5.52828 5.79089 5.89110 5.91144 6.01968 6.22925 6.29172 6.39690 6.60466 6.88540 7.07369 7.40253 7.97202 8.76910 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032802 B = 0.001539 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.407554 B =18187.676293 C =18455.041199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C -0.089 4.089 4 C -0.096 4.096 5 C -0.133 4.133 6 C 0.508 3.492 7 O -0.586 6.586 8 N -0.618 5.618 9 C 0.074 3.926 10 C 0.037 3.963 11 O -0.379 6.379 12 C 0.089 3.911 13 H 0.050 0.950 14 C 0.070 3.930 15 N -0.680 5.680 16 C 0.063 3.937 17 C 0.448 3.552 18 O -0.615 6.615 19 N -0.591 5.591 20 C -0.331 4.331 21 H 0.054 0.946 22 C -0.014 4.014 23 N -0.935 5.935 24 Si 0.965 3.035 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.231 1.231 28 C 0.088 3.912 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.123 0.877 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.341 0.659 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.390 0.610 48 H 0.279 0.721 49 H 0.089 0.911 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.219 -8.085 -4.144 36.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.186 4.186 3 C -0.126 4.126 4 C -0.135 4.135 5 C -0.172 4.172 6 C 0.299 3.701 7 O -0.467 6.467 8 N -0.352 5.352 9 C -0.047 4.047 10 C -0.040 4.040 11 O -0.297 6.297 12 C 0.030 3.970 13 H 0.068 0.932 14 C -0.059 4.059 15 N -0.312 5.312 16 C -0.070 4.070 17 C 0.236 3.764 18 O -0.499 6.499 19 N -0.232 5.232 20 C -0.460 4.460 21 H 0.072 0.928 22 C -0.212 4.212 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.154 1.154 28 C -0.036 4.036 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.141 0.859 42 H 0.084 0.916 43 H 0.110 0.890 44 H 0.159 0.841 45 H 0.132 0.868 46 H 0.097 0.903 47 H 0.226 0.774 48 H 0.089 0.911 49 H 0.108 0.892 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -34.959 -7.632 -4.556 36.072 hybrid contribution 0.941 -1.126 0.993 1.772 sum -34.019 -8.758 -3.563 35.308 Atomic orbital electron populations 1.24016 0.95974 1.02510 1.01043 1.23098 0.96417 0.99022 1.00027 1.20762 0.97981 0.95503 0.98332 1.21221 0.97557 0.96088 0.98584 1.21791 0.97821 1.01159 0.96408 1.21504 0.80941 0.80718 0.86910 1.90687 1.69719 1.36712 1.49547 1.48319 1.39513 1.18090 1.29254 1.22706 0.98496 0.88194 0.95350 1.23197 0.89350 1.03752 0.87733 1.88140 1.69416 1.33363 1.38805 1.22369 0.93887 0.87680 0.93040 0.93226 1.22005 0.87608 1.01216 0.95060 1.59940 1.02311 1.51867 1.17066 1.21642 0.88711 1.02910 0.93699 1.20997 0.86817 0.81760 0.86822 1.90544 1.84590 1.57417 1.17351 1.42021 1.09673 1.63205 1.08345 1.19021 0.87432 1.45475 0.94059 0.92762 1.26111 0.93913 0.95819 1.05395 1.69804 1.02815 1.46570 1.38349 0.85361 0.80492 0.79505 0.76138 1.18134 1.20001 1.15399 1.22155 0.88484 1.03565 0.89397 0.88232 0.87752 0.87826 0.90133 0.89659 0.92893 0.92929 0.86023 0.86322 0.85407 0.89152 0.93116 0.85892 0.91612 0.89011 0.84054 0.86759 0.90273 0.77416 0.91138 0.89235 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.88 14.32 67.78 0.97 -0.91 16 2 C -0.17 -1.76 9.52 25.65 0.24 -1.52 16 3 C -0.09 -0.70 5.66 29.85 0.17 -0.53 16 4 C -0.10 -1.15 4.49 30.60 0.14 -1.01 16 5 C -0.13 -1.15 4.07 29.85 0.12 -1.03 16 6 C 0.51 8.97 7.71 87.66 0.68 9.65 16 7 O -0.59 -15.70 15.45 -3.03 -0.05 -15.75 16 8 N -0.62 -9.61 3.02 -817.27 -2.47 -12.08 16 9 C 0.07 0.69 6.54 86.35 0.56 1.26 16 10 C 0.04 0.54 6.98 72.08 0.50 1.04 16 11 O -0.38 -8.78 10.25 -148.98 -1.53 -10.31 16 12 C 0.09 1.86 2.99 30.71 0.09 1.95 16 13 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 14 C 0.07 1.50 5.38 86.31 0.46 1.96 16 15 N -0.68 -20.70 6.00 -517.92 -3.11 -23.81 16 16 C 0.06 1.93 6.17 85.56 0.53 2.46 16 17 C 0.45 20.63 7.82 87.66 0.69 21.31 16 18 O -0.61 -34.94 15.78 -3.06 -0.05 -34.99 16 19 N -0.59 -28.22 5.09 -306.99 -1.56 -29.78 16 20 C -0.33 -19.64 10.16 84.04 0.85 -18.79 16 21 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 23 N -0.93 -56.81 13.96 21.66 0.30 -56.51 16 24 Si 0.97 38.98 27.74 68.60 1.90 40.88 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 27 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 28 C 0.09 1.57 5.93 86.37 0.51 2.08 16 29 H 0.10 0.83 8.06 -2.91 -0.02 0.81 16 30 H 0.10 0.78 7.84 -2.91 -0.02 0.76 16 31 H 0.10 1.14 8.06 -2.91 -0.02 1.11 16 32 H 0.08 0.44 7.79 -2.39 -0.02 0.42 16 33 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 35 H 0.05 0.82 8.10 -2.38 -0.02 0.80 16 36 H 0.12 0.44 8.02 -2.39 -0.02 0.42 16 37 H 0.12 0.51 7.66 -2.39 -0.02 0.49 16 38 H 0.13 0.31 6.05 -2.39 -0.01 0.30 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.34 11.23 8.43 -89.69 -0.76 10.47 16 45 H 0.11 3.00 8.14 -2.38 -0.02 2.98 16 46 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.39 15.32 5.76 -92.71 -0.53 14.79 16 48 H 0.28 15.48 8.31 -92.71 -0.77 14.70 16 49 H 0.09 1.82 7.08 -2.39 -0.02 1.80 16 50 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -86.27 409.31 0.02 -86.24 By element: Atomic # 1 Polarization: 38.88 SS G_CDS: -0.41 Total: 38.47 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 6.99 Total: 17.62 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -6.83 Total: -122.17 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -1.62 Total: -61.05 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.90 Total: 40.88 kcal Total: -86.27 0.02 -86.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484687951.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.518 kcal (2) G-P(sol) polarization free energy of solvation -86.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds