Wall clock time and date at job start Sat Apr 11 2020 05:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.46513 * 2 1 4 4 C 1.50705 * 119.99784 * 274.99804 * 3 2 1 5 5 C 1.32991 * 120.00017 * 95.00230 * 3 2 1 6 6 C 1.47099 * 119.99833 * 185.84234 * 5 3 2 7 7 O 1.21616 * 120.00096 * 4.97959 * 6 5 3 8 8 N 1.34780 * 120.00144 * 184.97781 * 6 5 3 9 9 C 1.46497 * 120.00011 * 174.86764 * 8 6 5 10 10 C 1.52992 * 113.38559 * 307.72493 * 9 8 6 11 11 C 1.53002 * 109.47212 * 291.35694 * 10 9 8 12 12 O 1.42900 * 109.47457 * 184.28900 * 11 10 9 13 13 C 1.53516 * 114.16849 * 174.64638 * 9 8 6 14 14 N 1.47481 * 87.99633 * 272.40673 * 13 9 8 15 15 C 1.46896 * 111.00309 * 221.26450 * 14 13 9 16 16 C 1.50697 * 109.47261 * 170.00000 * 15 14 13 17 17 O 1.21288 * 120.00275 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99909 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00118 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99528 * 0.02562 * 19 18 16 21 21 C 1.38952 * 120.00172 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99755 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99941 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47263 * 59.99837 * 23 21 19 25 25 H 1.48503 * 109.46912 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46888 * 299.99702 * 23 21 19 27 27 C 1.47482 * 87.83711 * 332.95972 * 14 13 9 28 28 H 1.08991 * 109.47403 * 60.00141 * 1 2 3 29 29 H 1.09008 * 109.46994 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47178 * 299.99622 * 1 2 3 31 31 H 1.08996 * 109.47136 * 240.00359 * 2 1 3 32 32 H 1.09004 * 109.47344 * 119.99465 * 2 1 3 33 33 H 1.08996 * 109.47097 * 234.89055 * 4 3 2 34 34 H 1.08999 * 109.47125 * 354.89367 * 4 3 2 35 35 H 1.09001 * 109.46937 * 114.88911 * 4 3 2 36 36 H 1.08003 * 120.00006 * 5.84974 * 5 3 2 37 37 H 0.96998 * 119.99569 * 354.86661 * 8 6 5 38 38 H 1.09002 * 109.47197 * 51.35470 * 10 9 8 39 39 H 1.09000 * 109.47284 * 171.35761 * 10 9 8 40 40 H 1.09001 * 109.46737 * 304.28101 * 11 10 9 41 41 H 1.08995 * 109.47626 * 64.28340 * 11 10 9 42 42 H 0.96694 * 114.00504 * 180.02562 * 12 11 10 43 43 H 1.08994 * 113.47506 * 157.61457 * 13 9 8 44 44 H 1.08998 * 113.47766 * 27.20107 * 13 9 8 45 45 H 1.08997 * 109.47550 * 290.00268 * 15 14 13 46 46 H 1.09006 * 109.46772 * 49.99919 * 15 14 13 47 47 H 0.97005 * 119.99955 * 359.97438 * 18 16 15 48 48 H 0.97002 * 119.99650 * 180.02562 * 22 21 19 49 49 H 1.09001 * 113.47465 * 141.77057 * 27 14 13 50 50 H 1.08999 * 113.47481 * 272.18149 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.1761 2.1692 -1.3002 5 6 2.3485 2.0144 1.1473 6 6 2.7152 3.4389 1.1619 7 8 2.6420 4.0961 0.1413 8 7 3.1324 4.0157 2.3064 9 6 3.6043 5.4026 2.2980 10 6 4.6867 5.6694 1.2502 11 6 5.9714 4.9392 1.6468 12 8 7.0109 5.2681 0.7230 13 6 3.9241 5.9661 3.6897 14 7 2.5086 6.3664 3.7960 15 6 2.3823 7.6988 4.4016 16 6 0.9592 8.1770 4.2714 17 8 0.1314 7.4766 3.7280 18 7 0.6062 9.3829 4.7587 19 6 -0.6886 9.8178 4.6408 20 1 -1.4259 9.1937 4.1576 21 6 -1.0527 11.0609 5.1437 22 7 -0.1559 11.8195 5.7329 23 14 -2.8171 11.6530 4.9836 24 1 -3.7226 10.7048 5.6807 25 1 -2.9447 12.9997 5.5961 26 1 -3.1865 11.7250 3.5470 27 6 2.4797 6.4501 2.3238 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.1952 2.5446 -1.3925 34 1 1.9593 1.4983 -2.1314 35 1 1.4777 3.0060 -1.3170 36 1 2.3362 1.4505 2.0684 37 1 3.1201 3.5126 3.1355 38 1 4.3488 5.3086 0.2787 39 1 4.8806 6.7405 1.1927 40 1 6.2676 5.2442 2.6505 41 1 5.7978 3.8633 1.6304 42 1 7.8564 4.8393 0.9133 43 1 4.6135 6.8101 3.6685 44 1 4.2147 5.2025 4.4111 45 1 2.6527 7.6458 5.4562 46 1 3.0477 8.3947 3.8905 47 1 1.2682 9.9430 5.1937 48 1 -0.4101 12.6872 6.0843 49 1 1.5460 6.0957 1.8870 50 1 2.7828 7.4235 1.9382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485405091.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:17 Heat of formation + Delta-G solvation = -73.442148 kcal Electronic energy + Delta-G solvation = -30033.774928 eV Core-core repulsion = 25869.513547 eV Total energy + Delta-G solvation = -4164.261382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07349 -39.23710 -37.85334 -36.96416 -36.27556 -34.19196 -33.74199 -31.83479 -31.21808 -30.95498 -29.05682 -27.77765 -26.09225 -25.34883 -24.42227 -23.76046 -22.08970 -21.36976 -19.31963 -19.19016 -18.65653 -17.88081 -17.56241 -17.01379 -16.17790 -15.93640 -15.46145 -15.33586 -14.99448 -14.82192 -14.72482 -14.44377 -14.35429 -14.12884 -13.87112 -13.66825 -13.32166 -13.15779 -12.91581 -12.71127 -12.41625 -12.32416 -12.07041 -11.95568 -11.82800 -11.63735 -11.58257 -11.53103 -11.33210 -11.19454 -11.10093 -10.92929 -10.44997 -10.41695 -10.20076 -10.16059 -9.48440 -9.40385 -9.34284 -8.92595 -8.71570 -8.23958 -7.95077 -6.40481 -3.81173 1.26969 3.10724 3.21283 3.26592 3.28511 3.31406 3.82693 3.92027 4.07835 4.25909 4.32405 4.44985 4.57897 4.86815 4.92988 4.93753 4.97365 5.00950 5.08143 5.14986 5.22215 5.28990 5.31429 5.38423 5.41919 5.49327 5.57416 5.59867 5.62384 5.66247 5.69789 5.75314 5.83375 5.86750 5.91173 5.96436 6.17569 6.22094 6.28988 6.37586 6.38505 6.53466 6.68369 7.15285 7.42231 7.56278 7.58756 8.06687 8.31466 8.62749 9.19281 9.55151 10.07263 10.77297 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.002604 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.173658 B =10750.311747 C =12615.817816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.030 4.030 4 C -0.117 4.117 5 C -0.231 4.231 6 C 0.549 3.451 7 O -0.533 6.533 8 N -0.696 5.696 9 C 0.152 3.848 10 C -0.122 4.122 11 C 0.082 3.918 12 O -0.574 6.574 13 C -0.007 4.007 14 N -0.439 5.439 15 C 0.008 3.992 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.017 3.983 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.403 0.597 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.376 0.624 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.056 0.944 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.095 0.905 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.471 -20.599 -7.067 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.032 4.032 4 C -0.173 4.173 5 C -0.252 4.252 6 C 0.339 3.661 7 O -0.412 6.412 8 N -0.347 5.347 9 C 0.064 3.936 10 C -0.160 4.160 11 C 0.005 3.995 12 O -0.379 6.379 13 C -0.137 4.137 14 N -0.161 5.161 15 C -0.124 4.124 16 C 0.229 3.771 17 O -0.460 6.460 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.113 4.113 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.107 0.893 36 H 0.142 0.858 37 H 0.239 0.761 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.223 0.777 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.074 0.926 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.114 0.886 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.852 -20.422 -7.927 24.907 hybrid contribution 0.491 0.844 0.928 1.347 sum 12.343 -19.578 -6.999 24.179 Atomic orbital electron populations 1.21718 0.93954 1.02009 1.02806 1.20762 0.96762 0.92659 1.03072 1.22548 0.89860 0.95288 0.95505 1.21029 1.03922 0.99630 0.92679 1.22353 1.09558 0.94292 0.98981 1.18487 0.76744 0.87715 0.83114 1.90754 1.52609 1.65057 1.32819 1.45346 1.66063 1.12424 1.10865 1.21249 0.94480 0.82730 0.95151 1.21734 0.91772 1.01529 1.01005 1.22093 0.87798 0.98118 0.91515 1.86496 1.22659 1.73795 1.54950 1.24272 0.93257 1.00679 0.95453 1.68859 1.14948 1.22910 1.09398 1.22504 0.97573 0.90912 1.01418 1.19643 0.89042 0.83378 0.85035 1.90536 1.52035 1.56051 1.47415 1.41856 1.11250 1.15334 1.51721 1.19646 0.86408 1.01036 1.35726 0.88026 1.25253 0.99874 0.96072 0.96727 1.69605 1.34278 1.11753 1.38784 0.85920 0.81982 0.77630 0.78710 1.19901 1.20964 1.19893 1.24117 0.99772 0.97443 0.89974 0.92225 0.92113 0.92137 0.90649 0.90852 0.90373 0.93118 0.89336 0.85833 0.76140 0.88267 0.90221 0.93782 0.93964 0.77719 0.90019 0.89394 0.89024 0.92554 0.77519 0.91840 0.88613 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.10 -0.66 6.04 -27.88 -0.17 -0.83 16 3 C -0.03 -0.29 5.36 -101.16 -0.54 -0.83 16 4 C -0.12 -1.21 8.34 36.01 0.30 -0.91 16 5 C -0.23 -2.34 9.63 -37.81 -0.36 -2.71 16 6 C 0.55 7.07 7.41 -12.66 -0.09 6.98 16 7 O -0.53 -8.39 11.16 5.26 0.06 -8.33 16 8 N -0.70 -8.07 5.26 -48.40 -0.25 -8.33 16 9 C 0.15 1.92 0.70 -131.46 -0.09 1.82 16 10 C -0.12 -1.50 4.94 -26.73 -0.13 -1.63 16 11 C 0.08 0.81 6.89 37.16 0.26 1.07 16 12 O -0.57 -5.96 13.66 -35.23 -0.48 -6.44 16 13 C -0.01 -0.08 6.20 -7.54 -0.05 -0.13 16 14 N -0.44 -7.24 6.06 -245.81 -1.49 -8.73 16 15 C 0.01 0.14 5.31 -4.98 -0.03 0.12 16 16 C 0.44 10.72 7.62 -10.99 -0.08 10.64 16 17 O -0.58 -16.11 15.34 5.55 0.09 -16.02 16 18 N -0.56 -14.57 5.29 -10.96 -0.06 -14.63 16 19 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.84 13.05 55.50 0.72 -24.11 16 23 Si 0.93 21.42 29.55 -169.99 -5.02 16.40 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.02 0.28 6.11 -7.44 -0.05 0.24 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.45 8.11 -51.93 -0.42 0.02 16 32 H 0.07 0.43 7.99 -51.93 -0.41 0.02 16 33 H 0.08 0.90 7.41 -51.93 -0.38 0.51 16 34 H 0.05 0.42 7.98 -51.93 -0.41 0.01 16 35 H 0.09 1.12 7.09 -51.93 -0.37 0.75 16 36 H 0.12 0.97 8.00 -52.48 -0.42 0.55 16 37 H 0.40 3.80 8.66 -40.82 -0.35 3.45 16 38 H 0.10 1.46 5.96 -51.93 -0.31 1.15 16 39 H 0.08 1.00 7.99 -51.93 -0.42 0.58 16 40 H 0.04 0.37 7.49 -51.93 -0.39 -0.02 16 41 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.38 2.05 9.12 45.56 0.42 2.46 16 43 H 0.08 0.86 7.73 -51.93 -0.40 0.46 16 44 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 46 H 0.06 0.90 7.56 -51.93 -0.39 0.51 16 47 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.10 1.95 8.13 -51.93 -0.42 1.53 16 50 H 0.07 1.22 7.56 -51.93 -0.39 0.83 16 LS Contribution 409.31 15.07 6.17 6.17 Total: -1.00 -35.09 409.31 -8.64 -43.73 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -7.45 Total: 15.27 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -0.91 Total: 5.03 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -1.08 Total: -55.80 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.34 Total: -30.79 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.09 -8.64 -43.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485405091.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.712 kcal (2) G-P(sol) polarization free energy of solvation -35.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds