Wall clock time and date at job start Sat Apr 11 2020 05:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50708 * 109.46513 * 2 1 4 4 C 1.50705 * 119.99784 * 274.99804 * 3 2 1 5 5 C 1.32991 * 120.00017 * 95.00230 * 3 2 1 6 6 C 1.47099 * 119.99833 * 185.84234 * 5 3 2 7 7 O 1.21616 * 120.00096 * 4.97959 * 6 5 3 8 8 N 1.34780 * 120.00144 * 184.97781 * 6 5 3 9 9 C 1.46497 * 120.00011 * 174.86764 * 8 6 5 10 10 C 1.52992 * 113.38559 * 307.72493 * 9 8 6 11 11 C 1.53002 * 109.47212 * 291.35694 * 10 9 8 12 12 O 1.42900 * 109.47457 * 184.28900 * 11 10 9 13 13 C 1.53516 * 114.16849 * 174.64638 * 9 8 6 14 14 N 1.47481 * 87.99633 * 272.40673 * 13 9 8 15 15 C 1.46896 * 111.00309 * 221.26450 * 14 13 9 16 16 C 1.50697 * 109.47261 * 170.00000 * 15 14 13 17 17 O 1.21288 * 120.00275 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99909 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00118 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99528 * 0.02562 * 19 18 16 21 21 C 1.38952 * 120.00172 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99755 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99941 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47263 * 59.99837 * 23 21 19 25 25 H 1.48503 * 109.46912 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46888 * 299.99702 * 23 21 19 27 27 C 1.47482 * 87.83711 * 332.95972 * 14 13 9 28 28 H 1.08991 * 109.47403 * 60.00141 * 1 2 3 29 29 H 1.09008 * 109.46994 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47178 * 299.99622 * 1 2 3 31 31 H 1.08996 * 109.47136 * 240.00359 * 2 1 3 32 32 H 1.09004 * 109.47344 * 119.99465 * 2 1 3 33 33 H 1.08996 * 109.47097 * 234.89055 * 4 3 2 34 34 H 1.08999 * 109.47125 * 354.89367 * 4 3 2 35 35 H 1.09001 * 109.46937 * 114.88911 * 4 3 2 36 36 H 1.08003 * 120.00006 * 5.84974 * 5 3 2 37 37 H 0.96998 * 119.99569 * 354.86661 * 8 6 5 38 38 H 1.09002 * 109.47197 * 51.35470 * 10 9 8 39 39 H 1.09000 * 109.47284 * 171.35761 * 10 9 8 40 40 H 1.09001 * 109.46737 * 304.28101 * 11 10 9 41 41 H 1.08995 * 109.47626 * 64.28340 * 11 10 9 42 42 H 0.96694 * 114.00504 * 180.02562 * 12 11 10 43 43 H 1.08994 * 113.47506 * 157.61457 * 13 9 8 44 44 H 1.08998 * 113.47766 * 27.20107 * 13 9 8 45 45 H 1.08997 * 109.47550 * 290.00268 * 15 14 13 46 46 H 1.09006 * 109.46772 * 49.99919 * 15 14 13 47 47 H 0.97005 * 119.99955 * 359.97438 * 18 16 15 48 48 H 0.97002 * 119.99650 * 180.02562 * 22 21 19 49 49 H 1.09001 * 113.47465 * 141.77057 * 27 14 13 50 50 H 1.08999 * 113.47481 * 272.18149 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.1761 2.1692 -1.3002 5 6 2.3485 2.0144 1.1473 6 6 2.7152 3.4389 1.1619 7 8 2.6420 4.0961 0.1413 8 7 3.1324 4.0157 2.3064 9 6 3.6043 5.4026 2.2980 10 6 4.6867 5.6694 1.2502 11 6 5.9714 4.9392 1.6468 12 8 7.0109 5.2681 0.7230 13 6 3.9241 5.9661 3.6897 14 7 2.5086 6.3664 3.7960 15 6 2.3823 7.6988 4.4016 16 6 0.9592 8.1770 4.2714 17 8 0.1314 7.4766 3.7280 18 7 0.6062 9.3829 4.7587 19 6 -0.6886 9.8178 4.6408 20 1 -1.4259 9.1937 4.1576 21 6 -1.0527 11.0609 5.1437 22 7 -0.1559 11.8195 5.7329 23 14 -2.8171 11.6530 4.9836 24 1 -3.7226 10.7048 5.6807 25 1 -2.9447 12.9997 5.5961 26 1 -3.1865 11.7250 3.5470 27 6 2.4797 6.4501 2.3238 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.1952 2.5446 -1.3925 34 1 1.9593 1.4983 -2.1314 35 1 1.4777 3.0060 -1.3170 36 1 2.3362 1.4505 2.0684 37 1 3.1201 3.5126 3.1355 38 1 4.3488 5.3086 0.2787 39 1 4.8806 6.7405 1.1927 40 1 6.2676 5.2442 2.6505 41 1 5.7978 3.8633 1.6304 42 1 7.8564 4.8393 0.9133 43 1 4.6135 6.8101 3.6685 44 1 4.2147 5.2025 4.4111 45 1 2.6527 7.6458 5.4562 46 1 3.0477 8.3947 3.8905 47 1 1.2682 9.9430 5.1937 48 1 -0.4101 12.6872 6.0843 49 1 1.5460 6.0957 1.8870 50 1 2.7828 7.4235 1.9382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485405091.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:16 Heat of formation + Delta-G solvation = -104.137729 kcal Electronic energy + Delta-G solvation = -30035.105989 eV Core-core repulsion = 25869.513547 eV Total energy + Delta-G solvation = -4165.592442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20764 -40.43261 -39.58125 -37.79842 -37.05521 -36.01138 -35.11217 -33.33258 -32.78167 -31.66147 -30.38194 -28.68360 -27.34718 -26.96805 -25.43815 -24.80120 -23.17371 -22.36300 -21.01471 -20.34380 -19.92374 -19.50193 -18.39670 -17.99670 -17.74489 -17.10545 -16.75526 -16.55547 -16.35297 -16.06649 -15.77662 -15.66485 -15.38451 -15.34818 -15.10551 -14.77552 -14.60162 -14.43724 -13.96333 -13.69681 -13.58042 -13.50342 -13.32423 -13.10780 -13.04150 -12.93458 -12.61832 -12.60772 -12.57173 -12.46089 -12.22908 -12.19344 -12.11215 -11.75693 -11.55121 -11.47767 -10.91581 -10.41069 -10.38274 -10.26186 -10.04926 -9.92861 -9.72819 -8.49663 -5.98498 0.43648 1.36684 1.38391 1.49470 2.02064 2.16346 2.26152 2.33369 2.80927 2.98147 3.16910 3.32121 3.41206 3.71582 3.85525 3.90241 4.09153 4.16055 4.23542 4.27239 4.32177 4.36146 4.40292 4.43476 4.44828 4.48940 4.55075 4.64818 4.65651 4.70625 4.78046 4.83492 4.84134 4.95159 5.03072 5.08209 5.13166 5.20976 5.27101 5.35334 5.37373 5.57375 5.61609 5.65640 5.82808 6.02172 6.57265 6.68193 6.92787 7.09728 7.36504 7.52539 8.09319 8.67554 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011059 B = 0.002604 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.173658 B =10750.311747 C =12615.817816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.027 4.027 4 C -0.114 4.114 5 C -0.240 4.240 6 C 0.539 3.461 7 O -0.571 6.571 8 N -0.689 5.689 9 C 0.167 3.833 10 C -0.118 4.118 11 C 0.090 3.910 12 O -0.596 6.596 13 C 0.009 3.991 14 N -0.460 5.460 15 C 0.020 3.980 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.075 0.925 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.272 1.272 25 H -0.267 1.267 26 H -0.274 1.274 27 C 0.007 3.993 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.152 0.848 37 H 0.416 0.584 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.398 0.602 43 H 0.104 0.896 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.080 0.920 47 H 0.397 0.603 48 H 0.279 0.721 49 H 0.045 0.955 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.213 -22.037 -5.646 27.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.029 4.029 4 C -0.170 4.170 5 C -0.261 4.261 6 C 0.330 3.670 7 O -0.453 6.453 8 N -0.340 5.340 9 C 0.079 3.921 10 C -0.157 4.157 11 C 0.012 3.988 12 O -0.405 6.405 13 C -0.120 4.120 14 N -0.182 5.182 15 C -0.111 4.111 16 C 0.226 3.774 17 O -0.508 6.508 18 N -0.211 5.211 19 C -0.465 4.465 20 H 0.093 0.907 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.815 3.185 24 H -0.197 1.197 25 H -0.191 1.191 26 H -0.199 1.199 27 C -0.124 4.124 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.170 0.830 37 H 0.254 0.746 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.248 0.752 43 H 0.122 0.878 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.098 0.902 47 H 0.231 0.769 48 H 0.088 0.912 49 H 0.064 0.936 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.646 -21.875 -6.464 26.580 hybrid contribution -0.049 1.276 0.407 1.341 sum 13.597 -20.599 -6.057 25.414 Atomic orbital electron populations 1.21731 0.94152 1.02886 1.01793 1.20807 0.96355 0.90796 1.04762 1.22814 0.88849 0.96643 0.94626 1.20935 1.02264 0.99252 0.94532 1.22492 1.10220 0.92858 1.00507 1.19075 0.76194 0.88880 0.82828 1.90752 1.54161 1.66174 1.34211 1.45306 1.65506 1.11979 1.11238 1.21060 0.92588 0.82218 0.96249 1.21630 0.93170 1.01520 0.99378 1.22003 0.86454 0.97931 0.92396 1.86439 1.24004 1.74467 1.55575 1.24354 0.90694 1.01893 0.95017 1.68828 1.18881 1.21960 1.08581 1.22422 0.93032 0.92114 1.03561 1.20805 0.91440 0.82238 0.82961 1.90509 1.54293 1.57105 1.48885 1.41922 1.10636 1.16169 1.52346 1.19584 0.87444 1.01906 1.37575 0.90743 1.26017 1.03802 0.95526 0.95762 1.69658 1.35758 1.12023 1.38491 0.85017 0.77183 0.77706 0.78602 1.19697 1.19128 1.19938 1.24082 0.99131 0.98687 0.90477 0.93111 0.90267 0.93352 0.89114 0.89021 0.91806 0.90970 0.92257 0.83007 0.74593 0.91343 0.90698 0.91136 0.93417 0.75194 0.87770 0.85965 0.86282 0.90218 0.76903 0.91200 0.93590 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.89 71.98 0.71 -1.19 16 2 C -0.09 -1.06 6.04 29.85 0.18 -0.87 16 3 C -0.03 -0.50 5.36 -17.61 -0.09 -0.60 16 4 C -0.11 -2.46 8.34 71.24 0.59 -1.87 16 5 C -0.24 -4.70 9.63 23.43 0.23 -4.47 16 6 C 0.54 14.20 7.41 86.57 0.64 14.84 16 7 O -0.57 -19.31 11.16 -4.08 -0.05 -19.36 16 8 N -0.69 -15.55 5.26 -425.28 -2.24 -17.79 16 9 C 0.17 4.12 0.70 4.11 0.00 4.12 16 10 C -0.12 -2.86 4.94 30.59 0.15 -2.71 16 11 C 0.09 1.56 6.89 71.98 0.50 2.06 16 12 O -0.60 -11.26 13.66 -148.98 -2.03 -13.29 16 13 C 0.01 0.18 6.20 83.58 0.52 0.70 16 14 N -0.46 -14.76 6.06 -931.59 -5.65 -20.41 16 15 C 0.02 0.70 5.31 85.56 0.45 1.15 16 16 C 0.44 21.65 7.62 87.66 0.67 22.31 16 17 O -0.62 -36.35 15.34 -3.05 -0.05 -36.39 16 18 N -0.57 -30.24 5.29 -306.98 -1.62 -31.86 16 19 C -0.34 -19.65 9.68 84.04 0.81 -18.83 16 20 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 22 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 23 Si 0.99 44.00 29.55 68.60 2.03 46.02 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 C 0.01 0.24 6.11 83.64 0.51 0.75 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.05 0.73 8.14 -2.38 -0.02 0.72 16 31 H 0.09 0.82 8.11 -2.39 -0.02 0.80 16 32 H 0.09 0.79 7.99 -2.39 -0.02 0.77 16 33 H 0.06 1.55 7.41 -2.39 -0.02 1.54 16 34 H 0.07 1.19 7.98 -2.39 -0.02 1.17 16 35 H 0.06 1.64 7.09 -2.39 -0.02 1.63 16 36 H 0.15 2.03 8.00 -2.91 -0.02 2.00 16 37 H 0.42 7.04 8.66 -92.71 -0.80 6.24 16 38 H 0.07 2.12 5.96 -2.39 -0.01 2.10 16 39 H 0.07 1.85 7.99 -2.39 -0.02 1.83 16 40 H 0.07 0.87 7.49 -2.39 -0.02 0.86 16 41 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.40 3.36 9.12 -74.06 -0.68 2.68 16 43 H 0.10 1.74 7.73 -2.39 -0.02 1.72 16 44 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.12 3.49 8.14 -2.39 -0.02 3.47 16 46 H 0.08 2.40 7.56 -2.38 -0.02 2.38 16 47 H 0.40 19.66 7.90 -92.70 -0.73 18.93 16 48 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 49 H 0.05 2.03 8.13 -2.39 -0.02 2.01 16 50 H 0.07 2.33 7.56 -2.39 -0.02 2.31 16 Total: -1.00 -81.31 409.31 -4.22 -85.53 By element: Atomic # 1 Polarization: 43.48 SS G_CDS: -1.24 Total: 42.24 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 6.34 Total: 15.25 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -9.23 Total: -119.99 kcal Atomic # 8 Polarization: -66.92 SS G_CDS: -2.13 Total: -69.04 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -81.31 -4.22 -85.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485405091.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.610 kcal (2) G-P(sol) polarization free energy of solvation -81.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds