Wall clock time and date at job start Sat Apr 11 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47557 * 2 1 4 4 C 1.52993 * 109.47494 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47494 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47224 * 54.99401 * 5 4 3 7 7 C 1.53001 * 109.47477 * 175.00075 * 5 4 3 8 8 N 1.46493 * 109.47086 * 174.99605 * 7 5 4 9 9 C 1.36945 * 119.99892 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99422 * 359.72792 * 9 8 7 11 11 C 1.38811 * 120.00031 * 179.72716 * 9 8 7 12 12 N 1.31614 * 119.99700 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 0.02562 * 11 9 8 14 14 H 1.48503 * 109.47294 * 90.00155 * 13 11 9 15 15 H 1.48499 * 109.47218 * 210.00015 * 13 11 9 16 16 H 1.48505 * 109.47256 * 330.00020 * 13 11 9 17 17 N 1.46499 * 109.46722 * 295.00000 * 5 4 3 18 18 C 1.34776 * 120.00310 * 85.00117 * 17 5 4 19 19 O 1.21279 * 119.99651 * 359.97438 * 18 17 5 20 20 C 1.50699 * 120.00219 * 179.97438 * 18 17 5 21 21 H 1.09001 * 109.46919 * 299.99661 * 20 18 17 22 22 C 1.53001 * 109.47369 * 59.99724 * 20 18 17 23 23 N 1.46501 * 109.47001 * 179.97438 * 20 18 17 24 24 C 1.33873 * 122.76635 * 299.70585 * 23 20 18 25 25 O 1.21233 * 125.39134 * 359.97438 * 24 23 20 26 26 C 1.51311 * 109.20806 * 179.84500 * 24 23 20 27 27 C 1.54229 * 103.55549 * 0.38635 * 26 24 23 28 28 C 1.33881 * 122.75825 * 120.00210 * 23 20 18 29 29 O 1.21219 * 125.39944 * 0.02562 * 28 23 20 30 30 H 1.08995 * 109.47344 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46695 * 300.00228 * 1 2 3 32 32 H 1.08995 * 109.46658 * 59.99861 * 1 2 3 33 33 H 1.08998 * 109.47324 * 239.99612 * 2 1 3 34 34 H 1.09006 * 109.46966 * 119.99709 * 2 1 3 35 35 H 1.08998 * 109.47120 * 59.99487 * 3 2 1 36 36 H 1.08998 * 109.46922 * 300.00178 * 3 2 1 37 37 H 1.08998 * 109.47378 * 59.99619 * 4 3 2 38 38 H 1.09006 * 109.46976 * 299.99676 * 4 3 2 39 39 H 1.08998 * 109.47065 * 54.99382 * 7 5 4 40 40 H 1.09001 * 109.46892 * 294.99646 * 7 5 4 41 41 H 0.97000 * 120.00738 * 359.73142 * 8 7 5 42 42 H 0.97004 * 120.00256 * 179.97438 * 12 11 9 43 43 H 0.97008 * 119.99748 * 264.99743 * 17 5 4 44 44 H 1.09002 * 109.46666 * 59.99886 * 22 20 18 45 45 H 1.08999 * 109.47048 * 180.02562 * 22 20 18 46 46 H 1.09000 * 109.46861 * 300.00523 * 22 20 18 47 47 H 1.09001 * 110.79237 * 241.77569 * 26 24 23 48 48 H 1.08997 * 110.54897 * 118.88159 * 26 24 23 49 49 H 1.08999 * 110.60503 * 241.26138 * 27 26 24 50 50 H 1.09000 * 110.73567 * 118.35930 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0802 2.8849 0.0000 6 1 3.6459 3.4235 0.8422 7 6 5.6051 2.8866 0.1251 8 7 6.1032 4.2591 0.0058 9 6 7.4471 4.5092 0.0875 10 1 8.1393 3.6951 0.2443 11 6 7.9197 5.8090 -0.0311 12 7 9.2113 6.0494 0.0479 13 14 6.7224 7.2170 -0.3016 14 1 6.2901 7.7585 1.0119 15 1 7.3879 8.2893 -1.0842 16 1 5.5372 6.7227 -1.0475 17 7 3.6921 3.5405 -1.2513 18 6 2.4748 4.1076 -1.3656 19 8 1.7005 4.0747 -0.4328 20 6 2.0758 4.7826 -2.6526 21 1 2.7672 5.5982 -2.8646 22 6 2.1193 3.7669 -3.7960 23 7 0.7169 5.3146 -2.5241 24 6 -0.3439 4.5387 -2.2691 25 8 -0.3141 3.3363 -2.1177 26 6 -1.5853 5.4008 -2.1965 27 6 -1.0538 6.8232 -2.4665 28 6 0.4328 6.6161 -2.6577 29 8 1.2387 7.4900 -2.8948 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.6768 1.9563 0.8899 36 1 1.6768 1.9563 -0.8900 37 1 3.9331 0.9287 -0.8908 38 1 3.9338 0.9285 0.8892 39 1 6.0353 2.2738 -0.6670 40 1 5.8905 2.4794 1.0950 41 1 5.4816 4.9903 -0.1346 42 1 9.5416 6.9576 -0.0353 43 1 4.3113 3.5666 -1.9975 44 1 1.4279 2.9513 -3.5839 45 1 1.8312 4.2552 -4.7269 46 1 3.1302 3.3706 -3.8917 47 1 -2.0397 5.3423 -1.2075 48 1 -2.3009 5.1064 -2.9642 49 1 -1.2440 7.4724 -1.6118 50 1 -1.5026 7.2380 -3.3692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485464826.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:10 Heat of formation + Delta-G solvation = -122.868623 kcal Electronic energy + Delta-G solvation = -31807.229489 eV Core-core repulsion = 27640.824814 eV Total energy + Delta-G solvation = -4166.404674 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.10285 -41.00880 -39.59862 -38.10735 -36.89615 -36.36375 -35.46968 -35.06200 -33.37764 -32.16080 -30.91893 -28.98154 -27.08706 -26.10359 -25.56168 -23.58210 -23.41598 -22.78955 -21.81817 -21.57796 -20.39885 -19.74798 -18.66189 -18.38148 -17.69092 -17.39080 -16.99565 -16.80174 -16.41040 -15.96081 -15.86030 -15.64281 -15.25763 -15.02237 -14.95068 -14.83562 -14.66048 -14.55007 -14.45462 -14.05252 -13.94384 -13.70493 -13.47077 -13.37022 -13.29787 -13.00031 -12.98901 -12.92732 -12.63117 -12.18275 -12.11167 -11.99458 -11.89784 -11.84076 -11.57445 -11.47425 -11.45203 -11.28624 -11.08250 -10.98862 -10.59088 -10.06263 -9.36096 -8.07845 -5.40627 0.54603 1.28997 1.30197 1.33126 1.38504 1.47403 1.72900 2.18536 2.40449 3.18026 3.24896 3.28069 3.39013 3.54966 3.63524 3.74897 3.83202 3.85066 4.05928 4.11018 4.15045 4.17193 4.26800 4.31023 4.50714 4.55860 4.58233 4.67086 4.73682 4.80634 4.88159 4.88300 4.90707 4.91638 4.97569 4.98822 5.06006 5.13411 5.17360 5.33834 5.38320 5.53422 5.60553 5.72342 5.81763 6.16186 6.34152 6.40038 6.77051 7.01925 7.09451 7.77536 7.95041 9.13563 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009203 B = 0.004694 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.875225 B = 5963.172200 C = 8430.808484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.103 4.103 4 C -0.118 4.118 5 C 0.148 3.852 6 H 0.065 0.935 7 C 0.149 3.851 8 N -0.757 5.757 9 C -0.230 4.230 10 H 0.066 0.934 11 C -0.052 4.052 12 N -0.978 5.978 13 Si 0.943 3.057 14 H -0.288 1.288 15 H -0.292 1.292 16 H -0.260 1.260 17 N -0.707 5.707 18 C 0.507 3.493 19 O -0.549 6.549 20 C 0.099 3.901 21 H 0.120 0.880 22 C -0.150 4.150 23 N -0.565 5.565 24 C 0.520 3.480 25 O -0.498 6.498 26 C -0.141 4.141 27 C -0.138 4.138 28 C 0.517 3.483 29 O -0.529 6.529 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.038 0.962 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.362 0.638 42 H 0.258 0.742 43 H 0.410 0.590 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.134 0.866 48 H 0.152 0.848 49 H 0.138 0.862 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.402 -6.331 -8.809 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C -0.140 4.140 4 C -0.156 4.156 5 C 0.043 3.957 6 H 0.083 0.917 7 C 0.023 3.977 8 N -0.403 5.403 9 C -0.361 4.361 10 H 0.084 0.916 11 C -0.245 4.245 12 N -0.629 5.629 13 Si 0.772 3.228 14 H -0.215 1.215 15 H -0.219 1.219 16 H -0.185 1.185 17 N -0.359 5.359 18 C 0.292 3.708 19 O -0.427 6.427 20 C -0.007 4.007 21 H 0.138 0.862 22 C -0.208 4.208 23 N -0.308 5.308 24 C 0.312 3.688 25 O -0.370 6.370 26 C -0.180 4.180 27 C -0.177 4.177 28 C 0.309 3.691 29 O -0.404 6.404 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.195 0.805 42 H 0.067 0.933 43 H 0.246 0.754 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.113 0.887 47 H 0.152 0.848 48 H 0.170 0.830 49 H 0.156 0.844 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -27.275 -6.635 -8.145 29.228 hybrid contribution 0.707 1.274 -0.133 1.463 sum -26.568 -5.361 -8.278 28.340 Atomic orbital electron populations 1.21667 0.95901 1.01441 1.01054 1.21512 0.95975 0.96176 1.02005 1.21521 0.94420 0.96561 1.01526 1.21915 0.96035 0.94066 1.03618 1.21185 0.93885 0.94394 0.86254 0.91694 1.21108 0.90692 0.85834 1.00088 1.42709 1.03653 1.04705 1.89228 1.19054 0.83642 0.93456 1.39929 0.91581 1.25307 0.96866 0.99430 1.02851 1.69841 1.13420 1.20440 1.59177 0.85602 0.79198 0.80187 0.77792 1.21461 1.21867 1.18550 1.45903 1.15783 1.56903 1.17298 1.20693 0.82095 0.78446 0.89534 1.90685 1.51650 1.59486 1.40894 1.21289 0.84928 0.99599 0.94907 0.86242 1.22061 1.05062 0.97934 0.95752 1.46769 1.08840 1.11077 1.64092 1.21594 0.86730 0.87740 0.72764 1.90730 1.86235 1.14447 1.45557 1.22561 0.94909 0.91739 1.08795 1.22583 0.87271 0.99027 1.08847 1.21881 0.94242 0.80257 0.72766 1.90783 1.56735 1.46239 1.46615 0.91694 0.93795 0.93830 0.91816 0.91626 0.94298 0.92620 0.90335 0.89849 0.93488 0.93733 0.80482 0.93264 0.75396 0.91126 0.89473 0.88739 0.84768 0.83015 0.84416 0.82798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.91 71.98 0.71 -2.40 16 2 C -0.12 -2.63 5.93 30.59 0.18 -2.45 16 3 C -0.10 -2.77 3.82 30.59 0.12 -2.65 16 4 C -0.12 -2.95 4.89 30.59 0.15 -2.80 16 5 C 0.15 4.53 2.42 44.99 0.11 4.64 16 6 H 0.06 2.31 7.58 -2.39 -0.02 2.29 16 7 C 0.15 5.32 5.82 86.38 0.50 5.82 16 8 N -0.76 -34.67 5.24 -343.46 -1.80 -36.47 16 9 C -0.23 -12.89 10.47 84.03 0.88 -12.01 16 10 H 0.07 4.00 8.06 -2.91 -0.02 3.97 16 11 C -0.05 -3.09 5.50 84.86 0.47 -2.62 16 12 N -0.98 -62.48 13.97 21.65 0.30 -62.18 16 13 Si 0.94 47.07 27.74 68.60 1.90 48.97 16 14 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 15 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16 16 H -0.26 -11.99 6.52 99.48 0.65 -11.34 16 17 N -0.71 -20.54 4.36 -442.55 -1.93 -22.47 16 18 C 0.51 15.41 5.36 87.66 0.47 15.88 16 19 O -0.55 -19.39 11.97 12.12 0.15 -19.24 16 20 C 0.10 2.51 3.12 44.24 0.14 2.65 16 21 H 0.12 3.22 7.41 -2.39 -0.02 3.20 16 22 C -0.15 -2.88 9.06 71.98 0.65 -2.23 16 23 N -0.56 -12.84 2.27 -738.14 -1.68 -14.52 16 24 C 0.52 10.72 6.70 87.99 0.59 11.31 16 25 O -0.50 -13.45 15.11 12.26 0.19 -13.26 16 26 C -0.14 -1.19 7.03 30.46 0.21 -0.98 16 27 C -0.14 -1.15 7.03 30.46 0.21 -0.94 16 28 C 0.52 10.93 8.08 87.99 0.71 11.64 16 29 O -0.53 -15.69 17.23 -2.84 -0.05 -15.74 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.04 1.22 7.84 -2.39 -0.02 1.20 16 36 H 0.06 1.71 5.63 -2.39 -0.01 1.70 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 1.91 8.14 -2.38 -0.02 1.90 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.36 16.60 5.19 -92.71 -0.48 16.12 16 42 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 43 H 0.41 10.89 8.02 -92.70 -0.74 10.14 16 44 H 0.07 1.53 6.62 -2.39 -0.02 1.51 16 45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.09 1.55 7.56 -2.39 -0.02 1.53 16 47 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.15 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.15 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -81.11 399.97 2.86 -78.25 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: -0.33 Total: 33.80 kcal Atomic # 6 Polarization: 16.75 SS G_CDS: 6.11 Total: 22.85 kcal Atomic # 7 Polarization: -130.53 SS G_CDS: -5.10 Total: -135.64 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: 0.28 Total: -48.25 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.90 Total: 48.97 kcal Total: -81.11 2.86 -78.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485464826.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.614 kcal (2) G-P(sol) polarization free energy of solvation -81.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds