Wall clock time and date at job start Sat Apr 11 2020 05:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 C 1.52994 * 109.47025 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47306 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46892 * 305.00508 * 5 4 3 7 7 C 1.52996 * 109.47530 * 184.99714 * 5 4 3 8 8 N 1.46498 * 109.47059 * 184.99929 * 7 5 4 9 9 C 1.36943 * 119.99752 * 179.72430 * 8 7 5 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 7 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 7 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 120.00044 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00049 * 13 11 9 17 17 N 1.46506 * 109.46609 * 64.99913 * 5 4 3 18 18 C 1.34782 * 119.99726 * 274.99704 * 17 5 4 19 19 O 1.21278 * 120.00302 * 0.02562 * 18 17 5 20 20 C 1.50704 * 119.99703 * 179.97438 * 18 17 5 21 21 H 1.09006 * 109.46761 * 60.00688 * 20 18 17 22 22 C 1.52993 * 109.47155 * 300.00949 * 20 18 17 23 23 N 1.46498 * 109.47155 * 180.02562 * 20 18 17 24 24 C 1.33877 * 122.75742 * 59.70943 * 23 20 18 25 25 O 1.21225 * 125.39972 * 359.97438 * 24 23 20 26 26 C 1.51321 * 109.20518 * 179.83917 * 24 23 20 27 27 C 1.54228 * 103.55132 * 0.39528 * 26 24 23 28 28 C 1.33872 * 122.76465 * 240.00396 * 23 20 18 29 29 O 1.21227 * 125.39678 * 0.02562 * 28 23 20 30 30 H 1.09001 * 109.47619 * 300.00358 * 1 2 3 31 31 H 1.09003 * 109.47243 * 60.00697 * 1 2 3 32 32 H 1.09001 * 109.46772 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47619 * 239.99641 * 2 1 3 34 34 H 1.09003 * 109.47243 * 119.99303 * 2 1 3 35 35 H 1.08994 * 109.47070 * 59.99773 * 3 2 1 36 36 H 1.09003 * 109.46541 * 299.99733 * 3 2 1 37 37 H 1.09001 * 109.47619 * 59.99641 * 4 3 2 38 38 H 1.09003 * 109.47243 * 299.99303 * 4 3 2 39 39 H 1.09004 * 109.47066 * 65.00196 * 7 5 4 40 40 H 1.08994 * 109.46974 * 305.00344 * 7 5 4 41 41 H 0.97001 * 120.00384 * 0.02562 * 8 7 5 42 42 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 43 43 H 0.97000 * 120.00390 * 95.00648 * 17 5 4 44 44 H 1.09008 * 109.46861 * 180.02562 * 22 20 18 45 45 H 1.09006 * 109.47073 * 299.99549 * 22 20 18 46 46 H 1.08993 * 109.47749 * 59.99770 * 22 20 18 47 47 H 1.08990 * 110.80026 * 241.78382 * 26 24 23 48 48 H 1.08999 * 110.54292 * 118.87776 * 26 24 23 49 49 H 1.09001 * 110.60191 * 241.25586 * 27 26 24 50 50 H 1.08997 * 110.73945 * 118.35802 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1250 8 7 6.1029 4.2594 -0.0058 9 6 7.4473 4.5089 -0.0814 10 1 8.1399 3.6943 -0.2333 11 6 7.9197 5.8087 0.0373 12 7 7.0755 6.8014 0.2229 13 14 9.7535 6.1491 -0.0665 14 1 10.4826 4.8729 -0.2777 15 1 10.0232 7.0666 -1.2027 16 1 10.2124 6.7786 1.1978 17 7 3.6918 3.5407 1.2513 18 6 2.4744 4.1078 1.3655 19 8 1.7001 4.0748 0.4327 20 6 2.0749 4.7817 2.6529 21 1 2.7662 5.5972 2.8658 22 6 2.1180 3.7651 3.7955 23 7 0.7161 5.3139 2.5243 24 6 -0.3429 4.5397 2.2570 25 8 -0.3113 3.3390 2.0925 26 6 -1.5860 5.4003 2.1959 27 6 -1.0547 6.8225 2.4672 28 6 0.4319 6.6152 2.6588 29 8 1.2379 7.4891 2.8959 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.9337 0.9286 -0.8891 38 1 3.9329 0.9290 0.8909 39 1 5.8903 2.4797 -1.0950 40 1 6.0350 2.2741 0.6671 41 1 5.4808 4.9910 0.1309 42 1 7.4056 7.7097 0.3054 43 1 4.3109 3.5669 1.9976 44 1 1.8286 4.2526 4.7266 45 1 1.4267 2.9497 3.5826 46 1 3.1288 3.3688 3.8913 47 1 -2.2998 5.1043 2.9646 48 1 -2.0425 5.3433 1.2077 49 1 -1.5042 7.2340 3.3709 50 1 -1.2444 7.4745 1.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485464842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:14 Heat of formation + Delta-G solvation = -102.006256 kcal Electronic energy + Delta-G solvation = -31637.430110 eV Core-core repulsion = 27471.930095 eV Total energy + Delta-G solvation = -4165.500014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.11371 -39.65277 -38.54218 -36.62403 -35.80499 -34.85033 -34.37328 -33.50458 -31.54756 -30.45769 -29.88110 -27.15888 -26.29553 -24.85387 -24.10306 -22.52613 -22.23789 -21.50738 -20.64050 -20.14827 -19.21463 -17.71254 -17.26958 -17.06054 -16.73053 -16.15555 -15.83974 -15.31513 -14.85487 -14.68717 -14.54124 -14.24972 -14.06782 -13.98987 -13.78245 -13.66009 -13.40082 -13.24132 -13.12057 -12.79323 -12.67032 -12.52708 -12.29526 -12.09637 -11.88807 -11.83307 -11.57521 -11.24638 -11.03632 -10.88229 -10.79869 -10.72161 -10.57311 -10.30941 -10.28648 -10.13423 -10.00517 -9.98715 -9.73661 -9.32466 -8.92995 -8.62861 -6.97270 -5.78808 -3.09065 1.50035 2.27416 2.65954 2.85438 3.41433 3.45429 3.47652 3.49874 3.93097 4.07152 4.24407 4.55055 4.59723 4.73071 4.82562 4.94020 4.97135 5.16579 5.18752 5.20189 5.30383 5.35240 5.37987 5.46130 5.49909 5.54782 5.55829 5.59040 5.67984 5.88413 5.92698 5.97832 6.02747 6.05038 6.13552 6.23338 6.30571 6.38481 6.46851 6.57933 6.68575 6.76267 6.79436 6.94725 7.28726 7.67686 7.69281 7.82738 8.38604 8.46777 9.50569 10.06155 10.41411 11.43390 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009736 B = 0.003969 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.312809 B = 7052.456329 C = 9385.753551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.126 4.126 5 C 0.141 3.859 6 H 0.086 0.914 7 C 0.145 3.855 8 N -0.732 5.732 9 C -0.244 4.244 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.929 5.929 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.291 1.291 17 N -0.703 5.703 18 C 0.513 3.487 19 O -0.527 6.527 20 C 0.106 3.894 21 H 0.132 0.868 22 C -0.160 4.160 23 N -0.556 5.556 24 C 0.533 3.467 25 O -0.465 6.465 26 C -0.156 4.156 27 C -0.154 4.154 28 C 0.525 3.475 29 O -0.479 6.479 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.033 0.967 40 H 0.025 0.975 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.404 0.596 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.557 -7.246 7.314 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.150 4.150 4 C -0.165 4.165 5 C 0.036 3.964 6 H 0.104 0.896 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.375 4.375 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.354 5.354 18 C 0.297 3.703 19 O -0.403 6.403 20 C 0.000 4.000 21 H 0.150 0.850 22 C -0.218 4.218 23 N -0.300 5.300 24 C 0.321 3.679 25 O -0.335 6.335 26 C -0.195 4.195 27 C -0.194 4.194 28 C 0.314 3.686 29 O -0.350 6.350 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.042 0.958 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.239 0.761 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.135 0.865 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.445 -7.496 6.644 21.873 hybrid contribution 1.328 0.630 0.247 1.491 sum -18.116 -6.865 6.891 20.563 Atomic orbital electron populations 1.21713 0.96155 1.00466 1.02132 1.21534 0.95762 0.97723 1.00958 1.21675 0.94314 0.95408 1.03595 1.21982 0.96413 0.96084 1.02041 1.21315 0.95977 0.92496 0.86608 0.89583 1.20967 0.89218 0.89361 0.98814 1.42359 1.05390 1.01987 1.87914 1.19255 0.83584 0.92546 1.42090 0.91092 1.24754 0.97676 0.95670 1.02648 1.69679 1.32801 0.99046 1.56243 0.86127 0.85105 0.77763 0.77218 1.20559 1.21865 1.21850 1.45831 1.15475 1.56765 1.17336 1.20190 0.82474 0.78734 0.88878 1.90697 1.51148 1.58597 1.39857 1.21271 0.83756 0.99571 0.95413 0.85042 1.22100 1.04432 0.98912 0.96360 1.46455 1.09209 1.10399 1.63909 1.20610 0.85562 0.87671 0.74026 1.90740 1.85639 1.12973 1.44107 1.22437 0.96987 0.93397 1.06713 1.22440 0.91874 0.98556 1.06505 1.20851 0.92061 0.81228 0.74449 1.90826 1.54829 1.45156 1.44149 0.92409 0.93116 0.93669 0.92800 0.92806 0.90839 0.91983 0.91298 0.92026 0.94885 0.95772 0.78046 0.93488 0.76132 0.91145 0.90331 0.89920 0.86473 0.86295 0.86306 0.86153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.15 0.37 -1.41 16 2 C -0.12 -1.53 5.93 -26.73 -0.16 -1.68 16 3 C -0.11 -1.64 3.82 -26.73 -0.10 -1.75 16 4 C -0.13 -1.78 4.89 -26.73 -0.13 -1.92 16 5 C 0.14 2.36 2.42 -67.93 -0.16 2.20 16 6 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 7 C 0.14 2.80 5.82 -4.04 -0.02 2.78 16 8 N -0.73 -18.08 5.43 -59.91 -0.33 -18.41 16 9 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 10 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 12 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 13 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 N -0.70 -11.15 4.36 -53.80 -0.23 -11.39 16 18 C 0.51 8.35 5.36 -10.98 -0.06 8.29 16 19 O -0.53 -9.78 11.91 -11.09 -0.13 -9.92 16 20 C 0.11 1.45 3.12 -69.08 -0.22 1.23 16 21 H 0.13 1.91 7.41 -51.93 -0.38 1.53 16 22 C -0.16 -1.73 9.07 37.15 0.34 -1.40 16 23 N -0.56 -7.02 2.28 -109.49 -0.25 -7.27 16 24 C 0.53 6.27 6.69 -11.08 -0.07 6.20 16 25 O -0.46 -6.76 15.04 -11.05 -0.17 -6.92 16 26 C -0.16 -1.04 7.03 -26.94 -0.19 -1.22 16 27 C -0.15 -1.03 7.03 -26.94 -0.19 -1.22 16 28 C 0.53 6.36 8.08 -11.09 -0.09 6.27 16 29 O -0.48 -7.66 17.23 5.60 0.10 -7.56 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 1.20 5.58 -51.93 -0.29 0.91 16 36 H 0.06 1.02 7.85 -51.93 -0.41 0.62 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.39 10.23 7.33 -40.82 -0.30 9.93 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.40 6.05 8.02 -40.82 -0.33 5.73 16 44 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 45 H 0.08 0.93 6.66 -51.93 -0.35 0.58 16 46 H 0.08 0.80 7.56 -51.93 -0.39 0.41 16 47 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.12 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 402.96 15.07 6.07 6.07 Total: -1.00 -35.20 402.96 -8.48 -43.68 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -8.31 Total: 12.70 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -0.94 Total: 9.10 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: -0.09 Total: -64.46 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.20 Total: -24.40 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.20 -8.48 -43.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485464842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.321 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds