Wall clock time and date at job start Sat Apr 11 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47425 * 2 1 4 4 C 1.52991 * 109.47467 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47366 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47375 * 304.99891 * 5 4 3 7 7 C 1.53003 * 109.47154 * 184.99799 * 5 4 3 8 8 N 1.46508 * 109.46944 * 185.00222 * 7 5 4 9 9 C 1.36933 * 119.99690 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00123 * 359.97438 * 9 8 7 11 11 C 1.38816 * 119.99790 * 180.02562 * 9 8 7 12 12 N 1.31620 * 120.00096 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00025 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47143 * 59.99790 * 13 11 9 15 15 H 1.48496 * 109.46865 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46945 * 300.00031 * 13 11 9 17 17 N 1.46502 * 109.46578 * 65.00127 * 5 4 3 18 18 C 1.34773 * 119.99972 * 274.99471 * 17 5 4 19 19 O 1.21283 * 120.00139 * 0.02562 * 18 17 5 20 20 C 1.50703 * 120.00188 * 180.02562 * 18 17 5 21 21 H 1.09006 * 109.46852 * 299.99869 * 20 18 17 22 22 C 1.53001 * 109.47161 * 60.00072 * 20 18 17 23 23 N 1.46497 * 109.47383 * 180.02562 * 20 18 17 24 24 C 1.33872 * 122.76512 * 119.99406 * 23 20 18 25 25 O 1.21233 * 125.39808 * 0.02840 * 24 23 20 26 26 C 1.51311 * 109.20933 * 179.75759 * 24 23 20 27 27 C 1.54226 * 103.55422 * 0.24888 * 26 24 23 28 28 C 1.33877 * 122.76044 * 300.21115 * 23 20 18 29 29 O 1.21223 * 125.39865 * 359.97210 * 28 23 20 30 30 H 1.08997 * 109.46893 * 60.00362 * 1 2 3 31 31 H 1.09005 * 109.47156 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47475 * 300.00202 * 1 2 3 33 33 H 1.09004 * 109.47203 * 239.99626 * 2 1 3 34 34 H 1.09006 * 109.46762 * 119.99759 * 2 1 3 35 35 H 1.08994 * 109.47346 * 59.99132 * 3 2 1 36 36 H 1.09008 * 109.46793 * 300.00161 * 3 2 1 37 37 H 1.09004 * 109.47114 * 59.99655 * 4 3 2 38 38 H 1.08999 * 109.47443 * 299.99804 * 4 3 2 39 39 H 1.08997 * 109.47194 * 304.99973 * 7 5 4 40 40 H 1.08992 * 109.46886 * 65.00463 * 7 5 4 41 41 H 0.97002 * 119.99948 * 0.02562 * 8 7 5 42 42 H 0.96995 * 119.99885 * 180.02562 * 12 11 9 43 43 H 0.97003 * 120.00297 * 95.00574 * 17 5 4 44 44 H 1.08999 * 109.46854 * 180.02562 * 22 20 18 45 45 H 1.08998 * 109.46967 * 299.99815 * 22 20 18 46 46 H 1.08996 * 109.46696 * 60.00308 * 22 20 18 47 47 H 1.08999 * 110.60546 * 118.76366 * 26 24 23 48 48 H 1.09001 * 110.61015 * 241.56985 * 26 24 23 49 49 H 1.09001 * 110.61135 * 118.52128 * 27 26 24 50 50 H 1.09008 * 110.60384 * 241.48509 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6458 3.4235 -0.8423 7 6 5.6049 2.8866 -0.1250 8 7 6.1031 4.2592 -0.0058 9 6 7.4470 4.5093 -0.0875 10 1 8.1396 3.6947 -0.2394 11 6 7.9191 5.8098 0.0260 12 7 7.0750 6.8025 0.2116 13 14 9.7522 6.1511 -0.0862 14 1 10.2600 5.6990 -1.4064 15 1 9.9944 7.6084 0.0642 16 1 10.4593 5.4171 0.9938 17 7 3.6919 3.5405 1.2513 18 6 2.4746 4.1076 1.3656 19 8 1.7003 4.0747 0.4327 20 6 2.0756 4.7825 2.6526 21 1 2.1065 4.0588 3.4672 22 6 3.0460 5.9273 2.9503 23 7 0.7167 5.3146 2.5241 24 6 -0.2902 4.9296 3.3179 25 8 -0.2065 4.1182 4.2148 26 6 -1.5478 5.6724 2.9227 27 6 -1.0897 6.5582 1.7462 28 6 0.3786 6.2227 1.6004 29 8 1.1308 6.7040 0.7806 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8898 36 1 1.6767 1.9563 -0.8901 37 1 3.9337 0.9284 -0.8891 38 1 3.9330 0.9288 0.8908 39 1 6.0351 2.2739 0.6671 40 1 5.8904 2.4795 -1.0949 41 1 5.4810 4.9908 0.1310 42 1 7.4049 7.7112 0.2906 43 1 4.3111 3.5667 1.9976 44 1 2.7576 6.4152 3.8814 45 1 4.0568 5.5311 3.0462 46 1 3.0150 6.6509 2.1358 47 1 -2.3200 4.9744 2.5993 48 1 -1.9077 6.2846 3.7495 49 1 -1.6341 6.3009 0.8375 50 1 -1.2200 7.6133 1.9869 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485464921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:22 Heat of formation + Delta-G solvation = -101.489233 kcal Electronic energy + Delta-G solvation = -31569.389372 eV Core-core repulsion = 27403.911777 eV Total energy + Delta-G solvation = -4165.477594 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.09910 -39.65685 -38.54135 -36.63733 -35.80056 -34.93307 -34.32297 -33.51041 -31.54893 -30.47206 -29.81774 -27.21553 -26.28718 -24.74558 -24.13834 -22.51548 -22.27544 -21.49302 -20.74162 -20.15819 -19.20647 -17.69071 -17.23155 -17.09105 -16.64242 -16.27946 -15.83727 -15.27428 -14.83765 -14.73558 -14.50193 -14.23813 -14.04751 -13.98818 -13.83637 -13.80740 -13.33091 -13.20842 -13.11258 -12.75174 -12.70424 -12.38076 -12.24703 -12.08092 -11.92056 -11.77486 -11.56105 -11.31368 -11.07421 -10.91361 -10.83669 -10.78769 -10.58190 -10.37674 -10.31949 -10.18811 -10.03090 -9.95497 -9.72449 -9.31947 -8.91159 -8.63213 -6.95983 -5.77105 -3.07393 1.49559 2.29667 2.67623 2.83903 3.42600 3.47254 3.48399 3.49179 3.92446 4.08107 4.25626 4.55334 4.60905 4.77711 4.87063 4.93949 4.95180 5.05854 5.18069 5.19085 5.23457 5.35217 5.40078 5.40689 5.46795 5.53758 5.55397 5.69826 5.82944 5.87664 5.88718 5.94806 5.97667 6.04287 6.16300 6.21542 6.27299 6.31368 6.44865 6.48205 6.62389 6.70216 6.78498 6.94060 7.26813 7.67662 7.72235 7.84023 8.40070 8.47000 9.52072 10.07858 10.43594 11.44644 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.003921 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.437539 B = 7138.757969 C = 9208.079294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.110 4.110 4 C -0.126 4.126 5 C 0.140 3.860 6 H 0.088 0.912 7 C 0.145 3.855 8 N -0.731 5.731 9 C -0.245 4.245 10 H 0.069 0.931 11 C -0.010 4.010 12 N -0.928 5.928 13 Si 0.906 3.094 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 N -0.703 5.703 18 C 0.513 3.487 19 O -0.527 6.527 20 C 0.109 3.891 21 H 0.124 0.876 22 C -0.162 4.162 23 N -0.556 5.556 24 C 0.529 3.471 25 O -0.492 6.492 26 C -0.154 4.154 27 C -0.155 4.155 28 C 0.527 3.473 29 O -0.452 6.452 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.033 0.967 41 H 0.387 0.613 42 H 0.256 0.744 43 H 0.404 0.596 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.897 -5.981 6.608 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.148 4.148 4 C -0.165 4.165 5 C 0.035 3.965 6 H 0.106 0.894 7 C 0.017 3.983 8 N -0.376 5.376 9 C -0.376 4.376 10 H 0.087 0.913 11 C -0.206 4.206 12 N -0.576 5.576 13 Si 0.737 3.263 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 N -0.354 5.354 18 C 0.296 3.704 19 O -0.403 6.403 20 C 0.003 3.997 21 H 0.142 0.858 22 C -0.220 4.220 23 N -0.300 5.300 24 C 0.318 3.682 25 O -0.364 6.364 26 C -0.194 4.194 27 C -0.195 4.195 28 C 0.315 3.685 29 O -0.320 6.320 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.221 0.779 42 H 0.066 0.934 43 H 0.239 0.761 44 H 0.086 0.914 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.137 0.863 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.774 -6.181 5.918 20.632 hybrid contribution 1.262 0.439 0.332 1.377 sum -17.511 -5.742 6.250 19.460 Atomic orbital electron populations 1.21733 0.96299 1.00851 1.01733 1.21572 0.95599 0.97717 1.01379 1.21645 0.94849 0.95316 1.02982 1.21978 0.96012 0.96334 1.02223 1.21316 0.96102 0.92302 0.86731 0.89441 1.20958 0.89144 0.89460 0.98777 1.42346 1.05400 1.01974 1.87860 1.19155 0.83626 0.92463 1.42370 0.91260 1.24739 0.97570 0.95662 1.02644 1.69661 1.32888 0.99003 1.56072 0.86288 0.85248 0.76885 0.77840 1.21295 1.21709 1.21296 1.45824 1.15480 1.56773 1.17319 1.20225 0.82635 0.78475 0.89015 1.90693 1.51431 1.58550 1.39661 1.21275 0.81708 0.98512 0.98210 0.85809 1.22124 0.98700 0.97802 1.03382 1.46487 1.10828 1.39736 1.32923 1.20819 0.86115 0.81032 0.80200 1.90765 1.84533 1.32089 1.29039 1.22435 0.96745 1.00118 1.00071 1.22449 0.93248 1.02928 1.00882 1.20658 0.90955 0.77684 0.79194 1.90841 1.57302 1.50944 1.32944 0.92863 0.93270 0.93086 0.92385 0.92582 0.92106 0.91604 0.91089 0.91923 0.95812 0.94928 0.77885 0.93440 0.76131 0.91431 0.89287 0.89695 0.86298 0.86273 0.86272 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.26 16 2 C -0.13 -1.46 5.93 -26.73 -0.16 -1.62 16 3 C -0.11 -1.54 3.82 -26.74 -0.10 -1.64 16 4 C -0.13 -1.75 4.89 -26.74 -0.13 -1.88 16 5 C 0.14 2.35 2.42 -67.93 -0.16 2.18 16 6 H 0.09 1.71 7.58 -51.93 -0.39 1.31 16 7 C 0.14 2.80 5.82 -4.04 -0.02 2.78 16 8 N -0.73 -18.00 5.43 -59.91 -0.33 -18.33 16 9 C -0.25 -6.72 9.99 -15.06 -0.15 -6.87 16 10 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 13 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 N -0.70 -11.17 4.36 -53.81 -0.23 -11.40 16 18 C 0.51 8.38 5.36 -10.99 -0.06 8.32 16 19 O -0.53 -9.83 11.92 -10.97 -0.13 -9.97 16 20 C 0.11 1.51 3.12 -69.08 -0.22 1.29 16 21 H 0.12 1.54 7.41 -51.93 -0.38 1.16 16 22 C -0.16 -2.28 9.07 37.16 0.34 -1.94 16 23 N -0.56 -7.14 2.28 -109.48 -0.25 -7.38 16 24 C 0.53 5.92 8.08 -11.09 -0.09 5.83 16 25 O -0.49 -6.84 17.23 5.60 0.10 -6.74 16 26 C -0.15 -0.97 7.03 -26.94 -0.19 -1.16 16 27 C -0.16 -1.14 7.03 -26.94 -0.19 -1.33 16 28 C 0.53 6.99 6.70 -11.09 -0.07 6.91 16 29 O -0.45 -8.11 15.12 -10.92 -0.17 -8.27 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.94 5.65 -51.93 -0.29 0.64 16 36 H 0.07 1.03 7.85 -51.92 -0.41 0.62 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.39 10.24 7.33 -40.82 -0.30 9.94 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.40 6.06 8.02 -40.82 -0.33 5.73 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 1.26 7.56 -51.93 -0.39 0.87 16 46 H 0.08 1.45 6.66 -51.93 -0.35 1.11 16 47 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.12 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 403.11 15.07 6.07 6.07 Total: -1.00 -35.07 403.11 -8.48 -43.55 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -8.31 Total: 13.07 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -0.94 Total: 9.26 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -0.09 Total: -64.17 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.20 Total: -24.98 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.07 -8.48 -43.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485464921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.936 kcal (2) G-P(sol) polarization free energy of solvation -35.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds