Wall clock time and date at job start Sat Apr 11 2020 05:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47425 * 2 1 4 4 C 1.52991 * 109.47467 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47366 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47375 * 304.99891 * 5 4 3 7 7 C 1.53003 * 109.47154 * 184.99799 * 5 4 3 8 8 N 1.46508 * 109.46944 * 185.00222 * 7 5 4 9 9 C 1.36933 * 119.99690 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00123 * 359.97438 * 9 8 7 11 11 C 1.38816 * 119.99790 * 180.02562 * 9 8 7 12 12 N 1.31620 * 120.00096 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00025 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47143 * 59.99790 * 13 11 9 15 15 H 1.48496 * 109.46865 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46945 * 300.00031 * 13 11 9 17 17 N 1.46502 * 109.46578 * 65.00127 * 5 4 3 18 18 C 1.34773 * 119.99972 * 274.99471 * 17 5 4 19 19 O 1.21283 * 120.00139 * 0.02562 * 18 17 5 20 20 C 1.50703 * 120.00188 * 180.02562 * 18 17 5 21 21 H 1.09006 * 109.46852 * 299.99869 * 20 18 17 22 22 C 1.53001 * 109.47161 * 60.00072 * 20 18 17 23 23 N 1.46497 * 109.47383 * 180.02562 * 20 18 17 24 24 C 1.33872 * 122.76512 * 119.99406 * 23 20 18 25 25 O 1.21233 * 125.39808 * 0.02840 * 24 23 20 26 26 C 1.51311 * 109.20933 * 179.75759 * 24 23 20 27 27 C 1.54226 * 103.55422 * 0.24888 * 26 24 23 28 28 C 1.33877 * 122.76044 * 300.21115 * 23 20 18 29 29 O 1.21223 * 125.39865 * 359.97210 * 28 23 20 30 30 H 1.08997 * 109.46893 * 60.00362 * 1 2 3 31 31 H 1.09005 * 109.47156 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47475 * 300.00202 * 1 2 3 33 33 H 1.09004 * 109.47203 * 239.99626 * 2 1 3 34 34 H 1.09006 * 109.46762 * 119.99759 * 2 1 3 35 35 H 1.08994 * 109.47346 * 59.99132 * 3 2 1 36 36 H 1.09008 * 109.46793 * 300.00161 * 3 2 1 37 37 H 1.09004 * 109.47114 * 59.99655 * 4 3 2 38 38 H 1.08999 * 109.47443 * 299.99804 * 4 3 2 39 39 H 1.08997 * 109.47194 * 304.99973 * 7 5 4 40 40 H 1.08992 * 109.46886 * 65.00463 * 7 5 4 41 41 H 0.97002 * 119.99948 * 0.02562 * 8 7 5 42 42 H 0.96995 * 119.99885 * 180.02562 * 12 11 9 43 43 H 0.97003 * 120.00297 * 95.00574 * 17 5 4 44 44 H 1.08999 * 109.46854 * 180.02562 * 22 20 18 45 45 H 1.08998 * 109.46967 * 299.99815 * 22 20 18 46 46 H 1.08996 * 109.46696 * 60.00308 * 22 20 18 47 47 H 1.08999 * 110.60546 * 118.76366 * 26 24 23 48 48 H 1.09001 * 110.61015 * 241.56985 * 26 24 23 49 49 H 1.09001 * 110.61135 * 118.52128 * 27 26 24 50 50 H 1.09008 * 110.60384 * 241.48509 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 1 3.6458 3.4235 -0.8423 7 6 5.6049 2.8866 -0.1250 8 7 6.1031 4.2592 -0.0058 9 6 7.4470 4.5093 -0.0875 10 1 8.1396 3.6947 -0.2394 11 6 7.9191 5.8098 0.0260 12 7 7.0750 6.8025 0.2116 13 14 9.7522 6.1511 -0.0862 14 1 10.2600 5.6990 -1.4064 15 1 9.9944 7.6084 0.0642 16 1 10.4593 5.4171 0.9938 17 7 3.6919 3.5405 1.2513 18 6 2.4746 4.1076 1.3656 19 8 1.7003 4.0747 0.4327 20 6 2.0756 4.7825 2.6526 21 1 2.1065 4.0588 3.4672 22 6 3.0460 5.9273 2.9503 23 7 0.7167 5.3146 2.5241 24 6 -0.2902 4.9296 3.3179 25 8 -0.2065 4.1182 4.2148 26 6 -1.5478 5.6724 2.9227 27 6 -1.0897 6.5582 1.7462 28 6 0.3786 6.2227 1.6004 29 8 1.1308 6.7040 0.7806 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8898 36 1 1.6767 1.9563 -0.8901 37 1 3.9337 0.9284 -0.8891 38 1 3.9330 0.9288 0.8908 39 1 6.0351 2.2739 0.6671 40 1 5.8904 2.4795 -1.0949 41 1 5.4810 4.9908 0.1310 42 1 7.4049 7.7112 0.2906 43 1 4.3111 3.5667 1.9976 44 1 2.7576 6.4152 3.8814 45 1 4.0568 5.5311 3.0462 46 1 3.0150 6.6509 2.1358 47 1 -2.3200 4.9744 2.5993 48 1 -1.9077 6.2846 3.7495 49 1 -1.6341 6.3009 0.8375 50 1 -1.2200 7.6133 1.9869 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485464921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:21 Heat of formation + Delta-G solvation = -125.271137 kcal Electronic energy + Delta-G solvation = -31570.420632 eV Core-core repulsion = 27403.911777 eV Total energy + Delta-G solvation = -4166.508855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.07065 -40.93956 -39.58856 -38.01141 -36.87716 -36.31072 -35.42222 -35.02581 -33.08645 -31.95723 -30.86986 -28.73674 -27.06571 -26.11574 -25.65311 -23.78827 -23.38895 -22.69377 -21.86160 -21.49629 -20.30257 -19.26403 -18.58579 -18.27485 -17.64235 -17.52185 -16.95668 -16.74712 -16.26135 -15.95536 -15.69251 -15.41560 -15.28781 -15.24235 -15.00408 -14.83959 -14.67237 -14.48181 -14.19717 -13.99104 -13.91925 -13.55615 -13.39099 -13.33554 -13.18006 -12.97578 -12.87953 -12.77624 -12.54186 -12.18780 -12.08904 -12.04861 -11.91049 -11.86459 -11.53432 -11.45392 -11.42114 -11.33706 -10.98471 -10.96928 -10.56278 -9.98711 -9.01909 -7.93489 -5.23987 0.57647 1.33434 1.47237 1.50007 1.53999 1.56135 1.73901 2.26695 2.55634 3.21479 3.30223 3.39887 3.51820 3.64127 3.65979 3.78140 3.84636 3.98387 4.02679 4.15302 4.19638 4.22476 4.27073 4.31833 4.51813 4.54401 4.57858 4.68198 4.75336 4.79920 4.87814 4.89917 4.90647 4.93073 4.94903 5.03680 5.05677 5.10354 5.18743 5.28314 5.36568 5.49438 5.51517 5.57907 5.85093 6.25623 6.37557 6.46502 6.80232 7.16600 7.33284 8.06500 8.30637 9.28742 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.003921 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.437539 B = 7138.757969 C = 9208.079294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C -0.101 4.101 4 C -0.117 4.117 5 C 0.151 3.849 6 H 0.053 0.947 7 C 0.146 3.854 8 N -0.743 5.743 9 C -0.247 4.247 10 H 0.079 0.921 11 C -0.071 4.071 12 N -0.966 5.966 13 Si 0.972 3.028 14 H -0.281 1.281 15 H -0.299 1.299 16 H -0.274 1.274 17 N -0.701 5.701 18 C 0.508 3.492 19 O -0.553 6.553 20 C 0.110 3.890 21 H 0.139 0.861 22 C -0.151 4.151 23 N -0.563 5.563 24 C 0.523 3.477 25 O -0.522 6.522 26 C -0.136 4.136 27 C -0.141 4.141 28 C 0.514 3.486 29 O -0.513 6.513 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.036 0.964 41 H 0.374 0.626 42 H 0.249 0.751 43 H 0.408 0.592 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.049 0.951 47 H 0.144 0.856 48 H 0.155 0.845 49 H 0.135 0.865 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.168 -7.395 7.689 22.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.139 4.139 4 C -0.156 4.156 5 C 0.046 3.954 6 H 0.072 0.928 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.379 4.379 10 H 0.097 0.903 11 C -0.263 4.263 12 N -0.616 5.616 13 Si 0.802 3.198 14 H -0.207 1.207 15 H -0.225 1.225 16 H -0.200 1.200 17 N -0.352 5.352 18 C 0.293 3.707 19 O -0.431 6.431 20 C 0.003 3.997 21 H 0.157 0.843 22 C -0.209 4.209 23 N -0.306 5.306 24 C 0.315 3.685 25 O -0.396 6.396 26 C -0.174 4.174 27 C -0.180 4.180 28 C 0.306 3.694 29 O -0.386 6.386 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.206 0.794 42 H 0.058 0.942 43 H 0.244 0.756 44 H 0.109 0.891 45 H 0.101 0.899 46 H 0.068 0.932 47 H 0.162 0.838 48 H 0.173 0.827 49 H 0.153 0.847 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.064 -7.655 7.019 22.592 hybrid contribution 1.635 0.818 -0.020 1.829 sum -18.428 -6.837 6.999 20.865 Atomic orbital electron populations 1.21717 0.95751 1.01895 1.01086 1.21545 0.96105 0.95843 1.02359 1.21504 0.94737 0.96686 1.00947 1.21914 0.95930 0.94067 1.03641 1.21114 0.94249 0.93990 0.86092 0.92824 1.21106 0.90719 0.86981 0.99267 1.42524 1.04525 1.03706 1.87846 1.19589 0.84946 0.92722 1.40628 0.90330 1.25543 1.01744 0.95645 1.03397 1.69841 1.34705 0.99006 1.58048 0.85235 0.80346 0.76144 0.78124 1.20719 1.22499 1.20018 1.45793 1.15609 1.56743 1.17062 1.20682 0.82335 0.78020 0.89665 1.90669 1.52213 1.59433 1.40803 1.21200 0.82962 0.98432 0.97074 0.84310 1.21987 0.98702 0.97172 1.03003 1.46761 1.10650 1.39774 1.33436 1.21741 0.87065 0.80566 0.79120 1.90750 1.85086 1.33538 1.30251 1.22581 0.94330 1.00017 1.00510 1.22578 0.88368 1.04917 1.02175 1.21803 0.93184 0.76558 0.77875 1.90812 1.59442 1.53033 1.35284 0.93432 0.91341 0.93853 0.91322 0.91570 0.93828 0.94016 0.89748 0.90232 0.93986 0.94617 0.79431 0.94188 0.75619 0.89148 0.89899 0.93194 0.83776 0.82714 0.84690 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.91 71.98 0.71 -2.29 16 2 C -0.12 -2.63 5.93 30.59 0.18 -2.45 16 3 C -0.10 -2.80 3.82 30.59 0.12 -2.69 16 4 C -0.12 -3.14 4.89 30.59 0.15 -2.99 16 5 C 0.15 5.17 2.42 44.99 0.11 5.28 16 6 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 7 C 0.15 5.65 5.82 86.38 0.50 6.15 16 8 N -0.74 -37.37 5.43 -343.45 -1.87 -39.23 16 9 C -0.25 -13.62 9.99 84.04 0.84 -12.78 16 10 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 11 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 12 N -0.97 -59.56 13.06 21.65 0.28 -59.27 16 13 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 14 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 15 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 16 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 17 N -0.70 -23.14 4.36 -442.53 -1.93 -25.07 16 18 C 0.51 17.44 5.36 87.66 0.47 17.91 16 19 O -0.55 -21.80 11.92 12.76 0.15 -21.65 16 20 C 0.11 3.14 3.12 44.25 0.14 3.28 16 21 H 0.14 3.49 7.41 -2.38 -0.02 3.47 16 22 C -0.15 -4.46 9.07 71.98 0.65 -3.81 16 23 N -0.56 -14.45 2.28 -738.13 -1.68 -16.13 16 24 C 0.52 10.91 8.08 87.99 0.71 11.62 16 25 O -0.52 -13.87 17.23 -2.88 -0.05 -13.92 16 26 C -0.14 -1.21 7.03 30.46 0.21 -1.00 16 27 C -0.14 -1.71 7.03 30.46 0.21 -1.49 16 28 C 0.51 13.76 6.70 87.99 0.59 14.35 16 29 O -0.51 -19.52 15.12 12.94 0.20 -19.33 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.04 1.36 5.65 -2.39 -0.01 1.34 16 36 H 0.04 1.35 7.85 -2.38 -0.02 1.33 16 37 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.37 20.65 7.33 -92.71 -0.68 19.97 16 42 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 43 H 0.41 12.63 8.02 -92.71 -0.74 11.88 16 44 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.08 2.49 7.56 -2.39 -0.02 2.48 16 46 H 0.05 1.85 6.66 -2.39 -0.02 1.83 16 47 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.16 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.15 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -80.47 403.11 2.73 -77.74 By element: Atomic # 1 Polarization: 43.74 SS G_CDS: -0.47 Total: 43.27 kcal Atomic # 6 Polarization: 19.44 SS G_CDS: 6.07 Total: 25.51 kcal Atomic # 7 Polarization: -134.51 SS G_CDS: -5.20 Total: -139.70 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: 0.30 Total: -54.90 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -80.47 2.73 -77.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485464921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.528 kcal (2) G-P(sol) polarization free energy of solvation -80.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds