Wall clock time and date at job start Sat Apr 11 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99931 * 2 1 4 4 C 1.53008 * 109.46921 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47122 * 65.00250 * 4 3 2 6 6 C 1.36930 * 120.00141 * 270.00053 * 5 4 3 7 7 H 1.08002 * 120.00210 * 141.45757 * 6 5 4 8 8 C 1.38820 * 119.99876 * 321.45627 * 6 5 4 9 9 N 1.31617 * 120.00002 * 338.83692 * 8 6 5 10 10 Si 1.86803 * 119.99797 * 158.83283 * 8 6 5 11 11 H 1.48498 * 109.47273 * 90.00057 * 10 8 6 12 12 H 1.48507 * 109.46842 * 210.00127 * 10 8 6 13 13 H 1.48501 * 109.47292 * 329.99587 * 10 8 6 14 14 C 1.46500 * 120.00122 * 89.99720 * 5 4 3 15 15 C 1.53000 * 109.47469 * 264.71136 * 14 5 4 16 16 N 1.46494 * 109.47238 * 179.97438 * 15 14 5 17 17 C 1.34777 * 119.99949 * 179.72091 * 16 15 14 18 18 O 1.21615 * 120.00154 * 0.28052 * 17 16 15 19 19 C 1.47421 * 120.00418 * 180.27839 * 17 16 15 20 20 C 1.36088 * 126.45234 * 180.02562 * 19 17 16 21 21 O 1.34262 * 106.94996 * 179.97438 * 20 19 17 22 22 C 1.34056 * 108.22543 * 0.02562 * 21 20 19 23 23 C 1.50702 * 125.37657 * 179.97438 * 22 21 20 24 24 C 1.53003 * 109.46963 * 240.02333 * 23 22 21 25 25 C 1.52994 * 109.46998 * 0.02562 * 23 22 21 26 26 C 1.52995 * 109.46996 * 120.02114 * 23 22 21 27 27 N 1.29930 * 109.24224 * 359.71581 * 22 21 20 28 28 H 1.09002 * 109.47308 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46915 * 299.99546 * 1 2 3 30 30 H 1.09004 * 109.47581 * 59.99703 * 1 2 3 31 31 H 1.08998 * 109.46820 * 60.00906 * 3 2 1 32 32 H 1.08998 * 109.47038 * 300.00092 * 3 2 1 33 33 H 1.09001 * 109.47133 * 305.00547 * 4 3 2 34 34 H 1.09000 * 109.46569 * 185.00235 * 4 3 2 35 35 H 0.96996 * 119.99786 * 180.02562 * 9 8 6 36 36 H 1.08992 * 109.47518 * 144.70866 * 14 5 4 37 37 H 1.09007 * 109.47015 * 24.70931 * 14 5 4 38 38 H 1.09005 * 109.47072 * 59.99619 * 15 14 5 39 39 H 1.08998 * 109.46945 * 300.00006 * 15 14 5 40 40 H 0.96998 * 120.00456 * 0.02562 * 16 15 14 41 41 H 1.07997 * 126.52551 * 359.97438 * 20 19 17 42 42 H 1.08994 * 109.47206 * 59.99870 * 24 23 22 43 43 H 1.08997 * 109.46746 * 180.02562 * 24 23 22 44 44 H 1.09002 * 109.47031 * 299.99965 * 24 23 22 45 45 H 1.09005 * 109.47360 * 60.00142 * 25 23 22 46 46 H 1.09003 * 109.47462 * 179.97438 * 25 23 22 47 47 H 1.08998 * 109.47823 * 300.00094 * 25 23 22 48 48 H 1.09002 * 109.47080 * 59.99985 * 26 23 22 49 49 H 1.09005 * 109.47193 * 179.97438 * 26 23 22 50 50 H 1.08997 * 109.47554 * 299.99987 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0967 -0.7969 -1.3370 7 1 3.8066 -1.3099 -2.2421 8 6 4.5923 -1.5177 -0.2591 9 7 5.3198 -0.9147 0.6571 10 14 4.2265 -3.3434 -0.1089 11 1 5.2889 -4.1194 -0.7975 12 1 4.1867 -3.7238 1.3261 13 1 2.9129 -3.6383 -0.7357 14 6 4.2863 1.4007 -2.4148 15 6 3.0582 1.4883 -3.3231 16 7 3.3687 2.3251 -4.4848 17 6 2.4321 2.5406 -5.4297 18 8 1.3276 2.0446 -5.3154 19 6 2.7464 3.3776 -6.6019 20 6 1.9055 3.6803 -7.6281 21 8 2.5901 4.4633 -8.4772 22 6 3.8244 4.6376 -7.9841 23 6 4.9150 5.4525 -8.6304 24 6 6.1179 4.5534 -8.9234 25 6 4.3961 6.0525 -9.9386 26 6 5.3382 6.5787 -7.6853 27 7 3.9302 3.9975 -6.8584 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8463 0.8901 32 1 1.6885 1.8464 -0.8900 33 1 3.8515 0.5681 0.8409 34 1 3.9785 2.1765 0.0890 35 1 5.6664 -1.4184 1.4101 36 1 5.1163 0.9608 -2.9676 37 1 4.5623 2.4005 -2.0796 38 1 2.2281 1.9283 -2.7703 39 1 2.7822 0.4886 -3.6584 40 1 4.2497 2.7204 -4.5763 41 1 0.8823 3.3529 -7.7386 42 1 5.8164 3.7511 -9.5966 43 1 6.9068 5.1429 -9.3904 44 1 6.4875 4.1260 -7.9913 45 1 3.5392 6.6931 -9.7299 46 1 5.1848 6.6423 -10.4059 47 1 4.0945 5.2503 -10.6120 48 1 5.7079 6.1513 -6.7532 49 1 6.1274 7.1679 -8.1525 50 1 4.4813 7.2192 -7.4766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486427879.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:49 Heat of formation + Delta-G solvation = -71.252462 kcal Electronic energy + Delta-G solvation = -29895.483130 eV Core-core repulsion = 25731.316700 eV Total energy + Delta-G solvation = -4164.166430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.54656 -40.64631 -38.93257 -37.94558 -37.43644 -35.97473 -35.62522 -33.35716 -31.32342 -30.80164 -29.18882 -28.22851 -28.20902 -27.16607 -26.14941 -24.87262 -24.23390 -23.15480 -22.22676 -21.70012 -20.55074 -19.07756 -18.61823 -17.90737 -17.56847 -17.39687 -16.99791 -16.68367 -16.51543 -16.28875 -16.16683 -15.65273 -15.40228 -15.35379 -15.04747 -14.91778 -14.78205 -14.39049 -14.31098 -13.65954 -13.42496 -13.24735 -13.08056 -13.03810 -12.71067 -12.60003 -12.59275 -12.51451 -12.41474 -12.40904 -12.36019 -12.06181 -11.96631 -11.95920 -11.77736 -11.74204 -11.55324 -11.40915 -10.47475 -10.40571 -10.23104 -9.97487 -8.54790 -7.79599 -5.39871 0.02182 0.91469 1.44841 1.48693 1.49174 1.59446 2.00545 2.17359 2.56228 2.72879 3.18400 3.33877 3.57216 3.66747 3.78257 3.89804 3.94237 4.07043 4.18272 4.26024 4.39969 4.41861 4.50551 4.54805 4.55810 4.69514 4.69813 4.75085 4.76180 4.80657 4.85781 4.85921 4.90159 4.94644 4.96831 4.96993 5.06336 5.08154 5.15863 5.29326 5.35729 5.38343 5.40899 5.70685 5.77610 6.26572 6.45643 6.56491 6.64316 7.04083 7.22047 7.87559 8.38153 9.18668 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.002390 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.103698 B =11712.645405 C =12384.071427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.052 3.948 4 C 0.142 3.858 5 N -0.585 5.585 6 C -0.246 4.246 7 H 0.042 0.958 8 C -0.021 4.021 9 N -0.915 5.915 10 Si 0.948 3.052 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.144 3.856 15 C 0.119 3.881 16 N -0.697 5.697 17 C 0.595 3.405 18 O -0.576 6.576 19 C -0.096 4.096 20 C 0.025 3.975 21 O -0.189 6.189 22 C 0.209 3.791 23 C 0.030 3.970 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.138 4.138 27 N -0.475 5.475 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.035 0.965 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.250 0.750 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.038 0.962 40 H 0.415 0.585 41 H 0.255 0.745 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.096 0.904 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.098 0.902 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.130 17.888 -19.427 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C -0.027 4.027 4 C 0.016 3.984 5 N -0.305 5.305 6 C -0.376 4.376 7 H 0.059 0.941 8 C -0.219 4.219 9 N -0.560 5.560 10 Si 0.777 3.223 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.017 3.983 15 C -0.007 4.007 16 N -0.347 5.347 17 C 0.382 3.618 18 O -0.457 6.457 19 C -0.215 4.215 20 C -0.049 4.049 21 O -0.075 6.075 22 C -0.001 4.001 23 C 0.029 3.971 24 C -0.197 4.197 25 C -0.201 4.201 26 C -0.196 4.196 27 N -0.204 5.204 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.252 0.748 41 H 0.270 0.730 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.115 0.885 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.117 0.883 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.133 17.279 -18.770 25.602 hybrid contribution -0.952 -1.054 0.196 1.434 sum -3.085 16.225 -18.574 24.854 Atomic orbital electron populations 1.22807 0.81755 1.02603 0.99864 1.88131 1.19420 1.28719 1.95158 1.23338 0.97004 0.84022 0.98340 1.21027 0.89462 0.96610 0.91328 1.43660 1.76073 1.02431 1.08347 1.18843 1.35157 0.83040 1.00578 0.94060 1.25585 0.96499 1.00732 0.99056 1.70075 1.34801 1.36812 1.14283 0.85605 0.77921 0.82261 0.76513 1.21045 1.21729 1.20678 1.20992 0.93262 0.95269 0.88793 1.22001 1.00259 0.92861 0.85565 1.45756 1.16274 1.50631 1.22040 1.17094 0.84017 0.79347 0.81381 1.90793 1.23524 1.52760 1.78590 1.21625 0.92736 1.07244 0.99940 1.25739 0.99547 0.91958 0.87704 1.84430 1.24146 1.53459 1.45457 1.27075 0.84858 0.98290 0.89877 1.19465 0.88171 0.93395 0.96081 1.21931 0.96052 0.99314 1.02379 1.21932 1.02632 1.01480 0.94083 1.21925 1.02526 0.96293 0.98840 1.70666 1.23080 1.11254 1.15397 0.89919 0.93164 0.94591 0.93224 0.94712 0.91380 0.92194 0.94052 0.93486 0.91719 0.92947 0.94302 0.74849 0.72953 0.92553 0.88252 0.92551 0.91892 0.88512 0.92000 0.92490 0.88285 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.40 -17.89 10.18 -148.98 -1.52 -19.41 16 3 C 0.05 2.10 6.28 71.98 0.45 2.56 16 4 C 0.14 6.59 5.76 86.38 0.50 7.08 16 5 N -0.58 -28.87 2.41 -701.98 -1.69 -30.56 16 6 C -0.25 -13.74 8.95 84.04 0.75 -12.99 16 7 H 0.04 2.39 7.91 -2.91 -0.02 2.37 16 8 C -0.02 -1.22 4.95 84.86 0.42 -0.80 16 9 N -0.92 -53.70 11.53 21.65 0.25 -53.45 16 10 Si 0.95 46.95 29.60 68.60 2.03 48.98 16 11 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 13 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 14 C 0.14 5.86 5.83 86.38 0.50 6.36 16 15 C 0.12 4.64 5.97 86.38 0.52 5.16 16 16 N -0.70 -23.09 5.55 -466.38 -2.59 -25.68 16 17 C 0.60 20.20 7.81 86.66 0.68 20.87 16 18 O -0.58 -22.97 16.89 -4.08 -0.07 -23.04 16 19 C -0.10 -2.66 6.99 40.41 0.28 -2.37 16 20 C 0.02 0.53 11.95 67.32 0.80 1.33 16 21 O -0.19 -3.69 10.11 0.28 0.00 -3.69 16 22 C 0.21 4.17 6.44 88.39 0.57 4.74 16 23 C 0.03 0.38 0.99 -52.93 -0.05 0.33 16 24 C -0.14 -1.61 8.46 71.98 0.61 -1.00 16 25 C -0.14 -1.19 8.01 71.98 0.58 -0.61 16 26 C -0.14 -1.52 8.45 71.98 0.61 -0.91 16 27 N -0.47 -11.95 11.05 -293.03 -3.24 -15.19 16 28 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.03 1.37 6.48 -2.39 -0.02 1.35 16 33 H 0.07 3.70 5.58 -2.39 -0.01 3.68 16 34 H 0.06 2.49 7.86 -2.39 -0.02 2.47 16 35 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 36 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 37 H 0.06 2.33 7.83 -2.38 -0.02 2.31 16 38 H 0.05 2.13 6.48 -2.38 -0.02 2.11 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.41 12.15 8.20 -92.71 -0.76 11.39 16 41 H 0.25 3.86 8.06 -2.91 -0.02 3.83 16 42 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 46 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 50 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -72.62 415.27 1.81 -70.81 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.17 Total: 19.32 kcal Atomic # 6 Polarization: 23.44 SS G_CDS: 8.46 Total: 31.90 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -7.27 Total: -124.87 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -1.58 Total: -46.14 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -72.62 1.81 -70.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486427879.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.443 kcal (2) G-P(sol) polarization free energy of solvation -72.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds