Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 110.45548 * 2 1 4 4 O 1.21275 * 120.00189 * 118.57606 * 3 2 1 5 5 N 1.34775 * 119.99904 * 298.84905 * 3 2 1 6 6 C 1.46505 * 119.99941 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47029 * 174.97420 * 6 5 3 8 8 H 1.09000 * 109.88076 * 55.33005 * 7 6 5 9 9 C 1.54318 * 109.88917 * 294.12594 * 7 6 5 10 10 C 1.55138 * 103.01896 * 218.30993 * 9 7 6 11 11 C 1.54904 * 101.65113 * 35.65696 * 10 9 7 12 12 N 1.47437 * 109.88744 * 176.35930 * 7 6 5 13 13 C 1.46900 * 111.00149 * 356.14642 * 12 7 6 14 14 C 1.50699 * 109.47426 * 176.74465 * 13 12 7 15 15 O 1.21291 * 119.99694 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00262 * 180.02562 * 14 13 12 17 17 C 1.37099 * 120.00109 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00105 * 0.02562 * 17 16 14 19 19 C 1.38946 * 120.00158 * 179.97438 * 17 16 14 20 20 N 1.31417 * 119.99816 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00436 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47120 * 89.99641 * 21 19 17 23 23 H 1.48499 * 109.47357 * 209.99972 * 21 19 17 24 24 H 1.48507 * 109.46958 * 330.00011 * 21 19 17 25 25 C 1.54510 * 110.62706 * 122.68321 * 2 1 3 26 26 C 1.54486 * 104.05889 * 118.70368 * 25 2 1 27 27 O 1.44426 * 104.80566 * 336.01645 * 26 25 2 28 28 C 1.44430 * 105.26958 * 40.51406 * 27 26 25 29 29 H 1.09007 * 109.47388 * 59.30181 * 1 2 3 30 30 H 1.09006 * 109.47251 * 179.29761 * 1 2 3 31 31 H 1.09004 * 109.47084 * 299.29752 * 1 2 3 32 32 H 0.97003 * 119.99868 * 0.02562 * 5 3 2 33 33 H 1.09000 * 109.47197 * 294.97419 * 6 5 3 34 34 H 1.08999 * 109.46916 * 54.97583 * 6 5 3 35 35 H 1.08998 * 110.70695 * 336.69579 * 9 7 6 36 36 H 1.08999 * 110.70533 * 99.92816 * 9 7 6 37 37 H 1.08999 * 110.99146 * 277.56345 * 10 9 7 38 38 H 1.08999 * 111.02257 * 153.75905 * 10 9 7 39 39 H 1.09003 * 110.37070 * 204.09651 * 11 10 9 40 40 H 1.08998 * 110.46971 * 81.80451 * 11 10 9 41 41 H 1.08997 * 109.47324 * 296.74225 * 13 12 7 42 42 H 1.08996 * 109.47219 * 56.74203 * 13 12 7 43 43 H 0.96999 * 119.99807 * 0.02562 * 16 14 13 44 44 H 0.96999 * 120.00031 * 180.02562 * 20 19 17 45 45 H 1.08993 * 110.51232 * 237.34750 * 25 2 1 46 46 H 1.08999 * 110.51275 * 0.06121 * 25 2 1 47 47 H 1.08997 * 110.36811 * 217.18960 * 26 25 2 48 48 H 1.08993 * 110.46537 * 94.90279 * 26 25 2 49 49 H 1.09005 * 110.37276 * 200.65168 * 28 27 26 50 50 H 1.09006 * 110.46871 * 78.36930 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4120 0.0000 4 8 2.7393 1.8046 0.9223 5 7 1.7645 2.2402 -1.0223 6 6 2.2770 3.6127 -1.0226 7 6 1.9092 4.2941 -2.3422 8 1 0.8318 4.2414 -2.4989 9 6 2.6473 3.6081 -3.5109 10 6 3.0242 4.7977 -4.4326 11 6 3.3311 5.9096 -3.3987 12 7 2.3441 5.7026 -2.3176 13 6 2.9137 6.0550 -1.0102 14 6 3.4188 7.4743 -1.0482 15 8 3.3148 8.1279 -2.0646 16 7 3.9868 8.0171 0.0469 17 6 4.4467 9.3082 0.0121 18 1 4.3534 9.8905 -0.8927 19 6 5.0319 9.8679 1.1412 20 7 5.1441 9.1599 2.2426 21 14 5.6579 11.6272 1.0941 22 1 4.5699 12.5509 1.5045 23 1 6.8057 11.7694 2.0255 24 1 6.0957 11.9601 -0.2854 25 6 2.0743 -0.7809 1.2171 26 6 2.8801 -1.9399 0.5895 27 8 2.3101 -2.1160 -0.7258 28 6 2.0712 -0.7796 -1.2188 29 1 -0.3634 0.5247 -0.8837 30 1 -0.3634 -1.0276 -0.0126 31 1 -0.3633 0.5029 0.8962 32 1 1.2149 1.9275 -1.7580 33 1 1.8360 4.1653 -0.1930 34 1 3.3612 3.5956 -0.9124 35 1 3.5422 3.0977 -3.1550 36 1 1.9866 2.9132 -4.0293 37 1 2.1860 5.0782 -5.0705 38 1 3.9060 4.5657 -5.0298 39 1 3.1998 6.8934 -3.8492 40 1 4.3448 5.8019 -3.0127 41 1 2.1455 5.9632 -0.2424 42 1 3.7394 5.3816 -0.7802 43 1 4.0709 7.4940 0.8594 44 1 5.5522 9.5507 3.0310 45 1 2.7243 -0.1457 1.8188 46 1 1.2534 -1.1690 1.8201 47 1 2.7603 -2.8484 1.1797 48 1 3.9344 -1.6739 0.5137 49 1 1.3301 -0.7968 -2.0179 50 1 3.0000 -0.3325 -1.5734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493149614.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = -134.920861 kcal Electronic energy + Delta-G solvation = -30474.227182 eV Core-core repulsion = 26307.299883 eV Total energy + Delta-G solvation = -4166.927299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.85070 -41.03372 -39.65262 -39.10271 -36.10016 -35.73369 -34.59281 -33.53385 -33.00995 -31.26818 -30.34579 -28.34871 -27.54984 -26.35022 -26.10495 -23.99408 -23.26677 -22.36422 -21.61172 -20.86718 -20.30467 -19.75159 -18.44743 -18.24596 -17.27607 -17.10309 -16.77372 -16.66643 -16.39334 -16.30275 -15.98623 -15.94136 -15.66257 -15.62016 -15.07737 -14.74301 -14.38440 -14.29247 -14.15662 -13.68090 -13.52595 -13.51099 -13.31911 -13.22344 -13.06085 -12.99901 -12.83648 -12.45240 -12.33355 -12.27526 -12.14715 -12.04721 -11.96304 -11.90085 -11.80218 -11.59783 -11.49721 -10.87457 -10.78771 -10.32422 -10.16041 -10.04295 -9.26709 -8.48842 -5.98338 1.35776 1.39191 1.50436 1.52512 1.96837 2.00814 2.26300 2.78863 2.96354 3.16995 3.26493 3.30803 3.52323 3.68329 3.74539 3.77101 3.83597 3.96211 4.12716 4.18470 4.20116 4.22378 4.29114 4.37511 4.41612 4.53042 4.57655 4.59225 4.67192 4.73911 4.76230 4.81720 4.88462 4.94220 4.97445 5.04635 5.06009 5.08137 5.23647 5.26815 5.28780 5.37875 5.38354 5.71260 5.81526 5.97821 6.10331 6.45393 6.56340 7.09307 7.15555 7.51562 8.06532 8.68722 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.002496 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.013322 B =11215.105628 C =12609.575723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 C 0.521 3.479 4 O -0.580 6.580 5 N -0.703 5.703 6 C 0.106 3.894 7 C 0.066 3.934 8 H 0.114 0.886 9 C -0.128 4.128 10 C -0.122 4.122 11 C 0.052 3.948 12 N -0.511 5.511 13 C 0.048 3.952 14 C 0.439 3.561 15 O -0.612 6.612 16 N -0.574 5.574 17 C -0.332 4.332 18 H 0.081 0.919 19 C -0.015 4.015 20 N -0.922 5.922 21 Si 0.995 3.005 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.271 1.271 25 C -0.147 4.147 26 C 0.044 3.956 27 O -0.383 6.383 28 C 0.059 3.941 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.418 0.582 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.019 0.981 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.394 0.606 44 H 0.278 0.722 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.112 0.888 48 H 0.055 0.945 49 H 0.130 0.870 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.772 -24.619 -7.676 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.113 4.113 3 C 0.308 3.692 4 O -0.459 6.459 5 N -0.356 5.356 6 C -0.019 4.019 7 C -0.042 4.042 8 H 0.132 0.868 9 C -0.166 4.166 10 C -0.160 4.160 11 C -0.076 4.076 12 N -0.235 5.235 13 C -0.083 4.083 14 C 0.226 3.774 15 O -0.498 6.498 16 N -0.211 5.211 17 C -0.461 4.461 18 H 0.099 0.901 19 C -0.215 4.215 20 N -0.563 5.563 21 Si 0.818 3.182 22 H -0.195 1.195 23 H -0.196 1.196 24 H -0.196 1.196 25 C -0.185 4.185 26 C -0.033 4.033 27 O -0.302 6.302 28 C -0.018 4.018 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.256 0.744 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.123 0.877 42 H 0.080 0.920 43 H 0.227 0.773 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.130 0.870 48 H 0.073 0.927 49 H 0.148 0.852 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.745 -23.707 -7.708 26.765 hybrid contribution 1.317 0.733 1.007 1.813 sum -8.427 -22.973 -6.701 25.371 Atomic orbital electron populations 1.21858 0.89139 1.04358 1.03519 1.22183 0.99805 0.90740 0.98578 1.20793 0.79146 0.87902 0.81351 1.90717 1.40447 1.77679 1.37077 1.45693 1.53710 1.11876 1.24281 1.21931 0.98714 0.82539 0.98679 1.22863 1.02154 0.85711 0.93482 0.86837 1.22901 1.00833 0.97761 0.95141 1.22730 1.02666 0.93640 0.96930 1.22971 0.92220 1.00296 0.92115 1.63551 1.38088 1.19944 1.01961 1.22016 0.99485 0.92583 0.94231 1.20697 0.82624 0.90181 0.83881 1.90471 1.61856 1.64721 1.32763 1.41954 1.53075 1.13372 1.12748 1.19672 1.37143 0.89999 0.99318 0.90084 1.26101 0.97122 1.04108 0.94159 1.69695 1.44799 1.39095 1.02736 0.84898 0.78092 0.76912 0.78251 1.19520 1.19581 1.19591 1.23055 1.01398 0.96857 0.97188 1.23530 0.96639 0.99465 0.83632 1.89119 1.83041 1.26097 1.31906 1.23594 1.01057 0.81988 0.95144 0.89699 0.89602 0.92419 0.74377 0.92016 0.92890 0.91520 0.86847 0.89620 0.89683 0.91693 0.96256 0.87685 0.92034 0.77284 0.91304 0.90496 0.88573 0.86996 0.92656 0.85210 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.21 71.98 0.59 -0.61 16 2 C -0.11 -1.55 0.88 -51.91 -0.05 -1.60 16 3 C 0.52 10.85 6.40 87.66 0.56 11.41 16 4 O -0.58 -18.21 15.29 -3.01 -0.05 -18.26 16 5 N -0.70 -11.21 5.21 -463.06 -2.41 -13.62 16 6 C 0.11 2.37 3.71 86.38 0.32 2.69 16 7 C 0.07 1.36 3.49 45.26 0.16 1.52 16 8 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 9 C -0.13 -2.03 6.16 31.77 0.20 -1.83 16 10 C -0.12 -2.52 7.08 31.98 0.23 -2.30 16 11 C 0.05 1.69 5.19 86.77 0.45 2.14 16 12 N -0.51 -16.22 5.10 -865.11 -4.41 -20.63 16 13 C 0.05 1.77 4.21 85.56 0.36 2.13 16 14 C 0.44 21.63 7.44 87.66 0.65 22.29 16 15 O -0.61 -34.00 13.61 -3.06 -0.04 -34.05 16 16 N -0.57 -30.76 5.29 -306.99 -1.62 -32.38 16 17 C -0.33 -19.32 9.68 84.04 0.81 -18.51 16 18 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 19 C -0.02 -0.84 5.50 84.92 0.47 -0.38 16 20 N -0.92 -51.56 13.05 21.66 0.28 -51.27 16 21 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 C -0.15 -2.36 6.32 31.61 0.20 -2.16 16 26 C 0.04 0.64 7.63 72.49 0.55 1.19 16 27 O -0.38 -6.18 11.65 -148.98 -1.74 -7.91 16 28 C 0.06 0.71 6.66 72.48 0.48 1.19 16 29 H 0.08 0.42 7.71 -2.38 -0.02 0.40 16 30 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.42 3.43 7.92 -92.71 -0.73 2.70 16 33 H 0.06 1.61 6.44 -2.39 -0.02 1.60 16 34 H 0.05 1.43 6.81 -2.39 -0.02 1.42 16 35 H 0.07 1.13 7.79 -2.39 -0.02 1.11 16 36 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 2.59 6.85 -2.39 -0.02 2.58 16 40 H 0.02 0.69 7.73 -2.39 -0.02 0.67 16 41 H 0.11 3.57 6.84 -2.39 -0.02 3.56 16 42 H 0.06 2.17 6.40 -2.39 -0.02 2.15 16 43 H 0.39 20.45 7.90 -92.71 -0.73 19.72 16 44 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 45 H 0.08 1.67 6.51 -2.39 -0.02 1.65 16 46 H 0.10 1.24 7.74 -2.39 -0.02 1.22 16 47 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.13 0.76 7.87 -2.38 -0.02 0.74 16 50 H 0.06 0.77 7.86 -2.38 -0.02 0.75 16 Total: -1.00 -76.99 391.61 -2.47 -79.46 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: -0.50 Total: 35.54 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 5.99 Total: 17.18 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -8.17 Total: -117.90 kcal Atomic # 8 Polarization: -58.39 SS G_CDS: -1.82 Total: -60.22 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -76.99 -2.47 -79.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493149614.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.456 kcal (2) G-P(sol) polarization free energy of solvation -76.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds