Wall clock time and date at job start Sat Apr 11 2020 05:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50696 * 110.45720 * 2 1 4 4 O 1.21278 * 120.00275 * 241.14873 * 3 2 1 5 5 N 1.34785 * 119.99959 * 61.15063 * 3 2 1 6 6 C 1.46505 * 119.99833 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.46706 * 186.60735 * 6 5 3 8 8 H 1.08999 * 110.33112 * 299.40678 * 7 6 5 9 9 C 1.54908 * 110.37111 * 177.03676 * 7 6 5 10 10 C 1.55401 * 101.74189 * 204.19051 * 9 7 6 11 11 C 1.54313 * 102.89562 * 35.48004 * 10 9 7 12 12 N 1.47441 * 107.37582 * 337.89164 * 11 10 9 13 13 C 1.46897 * 111.00176 * 236.66080 * 12 11 10 14 14 C 1.50692 * 109.47316 * 283.76611 * 13 12 11 15 15 O 1.21290 * 120.00196 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99858 * 180.02562 * 14 13 12 17 17 C 1.37102 * 119.99888 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99988 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99863 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00220 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 120.00014 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46946 * 89.99744 * 21 19 17 23 23 H 1.48501 * 109.47197 * 209.99907 * 21 19 17 24 24 H 1.48500 * 109.46842 * 330.00204 * 21 19 17 25 25 C 1.54508 * 110.62897 * 237.31395 * 2 1 3 26 26 C 1.54482 * 104.06620 * 241.29781 * 25 2 1 27 27 O 1.44418 * 104.80003 * 336.02122 * 26 25 2 28 28 C 1.44426 * 105.27899 * 40.51369 * 27 26 25 29 29 H 1.09003 * 109.47632 * 60.70068 * 1 2 3 30 30 H 1.09005 * 109.47546 * 180.70114 * 1 2 3 31 31 H 1.09004 * 109.47311 * 300.70204 * 1 2 3 32 32 H 0.96994 * 119.99982 * 0.02562 * 5 3 2 33 33 H 1.08995 * 109.46533 * 66.61229 * 6 5 3 34 34 H 1.08999 * 109.47132 * 306.60822 * 6 5 3 35 35 H 1.09000 * 110.99169 * 322.19402 * 9 7 6 36 36 H 1.09004 * 110.99101 * 85.96912 * 9 7 6 37 37 H 1.08995 * 110.67349 * 277.17665 * 10 9 7 38 38 H 1.08998 * 110.84656 * 153.86174 * 10 9 7 39 39 H 1.09003 * 109.88746 * 218.40233 * 11 10 9 40 40 H 1.09005 * 109.89215 * 97.38841 * 11 10 9 41 41 H 1.08997 * 109.47039 * 43.76683 * 13 12 11 42 42 H 1.08999 * 109.46915 * 163.76432 * 13 12 11 43 43 H 0.96995 * 120.00481 * 0.02562 * 16 14 13 44 44 H 0.96999 * 120.00043 * 180.02562 * 20 19 17 45 45 H 1.08994 * 110.50887 * 359.94515 * 25 2 1 46 46 H 1.09009 * 110.50857 * 122.65053 * 25 2 1 47 47 H 1.08996 * 110.37332 * 217.18906 * 26 25 2 48 48 H 1.08995 * 110.46292 * 94.90149 * 26 25 2 49 49 H 1.08999 * 110.37640 * 200.65926 * 28 27 26 50 50 H 1.08993 * 110.46955 * 78.36412 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0566 1.4119 0.0000 4 8 2.7434 1.8030 -0.9199 5 7 1.7644 2.2402 1.0224 6 6 2.2770 3.6127 1.0227 7 6 1.9435 4.2812 2.3578 8 1 0.8641 4.3140 2.5058 9 6 2.5409 5.7096 2.4097 10 6 2.6668 5.9442 3.9407 11 6 3.0383 4.5448 4.4743 12 7 2.5941 3.5591 3.4718 13 6 1.6790 2.5771 4.0685 14 6 2.4675 1.5896 4.8894 15 8 3.6732 1.6938 4.9699 16 7 1.8329 0.5905 5.5341 17 6 2.5504 -0.3082 6.2805 18 1 3.6240 -0.2154 6.3522 19 6 1.8963 -1.3385 6.9448 20 7 0.5900 -1.4518 6.8572 21 14 2.8737 -2.5627 7.9624 22 1 2.9863 -2.0680 9.3581 23 1 2.1806 -3.8760 7.9571 24 1 4.2315 -2.7172 7.3811 25 6 2.0743 -0.7809 -1.2170 26 6 2.8801 -1.9400 -0.5896 27 8 3.2417 -1.4678 0.7265 28 6 2.0712 -0.7797 1.2189 29 1 -0.3634 0.5029 -0.8962 30 1 -0.3634 -1.0276 0.0126 31 1 -0.3634 0.5247 0.8836 32 1 1.2155 1.9273 1.7583 33 1 1.8147 4.1731 0.2102 34 1 3.3580 3.5968 0.8842 35 1 3.5192 5.7413 1.9302 36 1 1.8629 6.4331 1.9570 37 1 1.7164 6.2762 4.3586 38 1 3.4570 6.6624 4.1594 39 1 2.5324 4.3631 5.4225 40 1 4.1175 4.4744 4.6108 41 1 0.9618 3.0909 4.7086 42 1 1.1467 2.0490 3.2774 43 1 0.8688 0.5069 5.4695 44 1 0.1333 -2.1708 7.3212 45 1 1.2534 -1.1689 -1.8200 46 1 2.7243 -0.1456 -1.8188 47 1 3.7742 -2.1431 -1.1788 48 1 2.2639 -2.8360 -0.5153 49 1 2.3441 -0.0914 2.0188 50 1 1.3287 -1.4952 1.5718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493149616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:42 Heat of formation + Delta-G solvation = -107.635913 kcal Electronic energy + Delta-G solvation = -31760.755724 eV Core-core repulsion = 27595.011589 eV Total energy + Delta-G solvation = -4165.744135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.68029 -39.49788 -38.17537 -37.57630 -34.65028 -33.93799 -33.66619 -32.03779 -31.14148 -30.32592 -29.33356 -26.83812 -26.46637 -25.28997 -24.18355 -23.15841 -21.97620 -21.24722 -20.40243 -19.36955 -19.07586 -17.88619 -17.37880 -16.39818 -16.13956 -15.97108 -15.84194 -15.39034 -15.20986 -14.75735 -14.70518 -14.51288 -14.11717 -13.85617 -13.80871 -13.63473 -13.25594 -12.98273 -12.82758 -12.54540 -12.43316 -12.22729 -12.08035 -11.70931 -11.70750 -11.42747 -11.41631 -11.29630 -11.22785 -11.05481 -11.03617 -10.96984 -10.71214 -10.59101 -10.38688 -10.21701 -9.91656 -9.50150 -9.45038 -8.96072 -8.50639 -7.97935 -7.93974 -6.42317 -3.82520 2.70139 3.15895 3.19201 3.27184 3.33810 3.84709 3.88533 4.04697 4.21797 4.29281 4.52705 4.57271 4.67294 4.84907 4.89106 4.92362 5.07599 5.10753 5.15263 5.17714 5.22405 5.25099 5.42498 5.46252 5.51449 5.53512 5.59718 5.64478 5.68298 5.72909 5.75652 5.79376 5.81529 5.90017 5.91323 5.95064 6.00442 6.12025 6.15614 6.24735 6.40615 6.51822 6.85901 7.16379 7.18816 7.53408 7.55563 8.05751 8.28291 8.61056 9.18648 9.52872 10.05247 10.75340 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007558 B = 0.005039 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3703.959892 B = 5555.028386 C = 8450.437805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 C 0.533 3.467 4 O -0.541 6.541 5 N -0.720 5.720 6 C 0.137 3.863 7 C 0.055 3.945 8 H 0.059 0.941 9 C -0.117 4.117 10 C -0.142 4.142 11 C 0.055 3.945 12 N -0.497 5.497 13 C 0.041 3.959 14 C 0.442 3.558 15 O -0.568 6.568 16 N -0.566 5.566 17 C -0.295 4.295 18 H 0.102 0.898 19 C 0.024 3.976 20 N -0.903 5.903 21 Si 0.927 3.073 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.141 4.141 26 C 0.043 3.957 27 O -0.363 6.363 28 C 0.059 3.941 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.397 0.603 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.390 0.610 44 H 0.271 0.729 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.059 0.941 49 H 0.099 0.901 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.522 8.081 -12.631 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.123 4.123 3 C 0.319 3.681 4 O -0.418 6.418 5 N -0.374 5.374 6 C 0.013 3.987 7 C -0.054 4.054 8 H 0.077 0.923 9 C -0.156 4.156 10 C -0.181 4.181 11 C -0.073 4.073 12 N -0.222 5.222 13 C -0.091 4.091 14 C 0.227 3.773 15 O -0.450 6.450 16 N -0.204 5.204 17 C -0.425 4.425 18 H 0.120 0.880 19 C -0.178 4.178 20 N -0.545 5.545 21 Si 0.754 3.246 22 H -0.205 1.205 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.179 4.179 26 C -0.034 4.034 27 O -0.281 6.281 28 C -0.019 4.019 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.235 0.765 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.223 0.777 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.116 0.884 47 H 0.109 0.891 48 H 0.077 0.923 49 H 0.117 0.883 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.688 7.984 -13.211 15.871 hybrid contribution -1.494 -0.495 1.209 1.985 sum -5.182 7.489 -12.002 15.066 Atomic orbital electron populations 1.21802 0.91348 1.03354 1.02683 1.22212 0.97811 0.93648 0.98662 1.20115 0.79575 0.86610 0.81784 1.90634 1.38345 1.76742 1.36059 1.46119 1.54052 1.13370 1.23879 1.21370 1.00665 0.81156 0.95498 1.22863 0.97215 0.93439 0.91896 0.92309 1.22669 1.01792 0.94387 0.96732 1.22881 1.01723 0.98213 0.95285 1.22746 1.02350 0.88401 0.93753 1.63127 1.36588 1.14033 1.08438 1.22201 0.94084 0.95032 0.97763 1.19674 0.88614 0.84272 0.84778 1.90549 1.14030 1.75047 1.65368 1.41852 1.09688 1.25069 1.43746 1.19674 0.93636 1.05139 1.24001 0.87978 1.25209 0.95761 0.98469 0.98341 1.69599 1.07357 1.33554 1.43975 0.85900 0.79659 0.79301 0.79740 1.20498 1.20941 1.19352 1.23045 1.00816 0.97224 0.96846 1.23430 0.99527 0.95896 0.84521 1.89233 1.34673 1.73533 1.30641 1.23554 0.88412 0.95238 0.94658 0.91680 0.90872 0.91775 0.76459 0.91604 0.90257 0.90121 0.90709 0.91673 0.90609 0.92695 0.89855 0.92882 0.90854 0.77721 0.91959 0.90095 0.88366 0.89080 0.92285 0.88285 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 8.21 37.15 0.31 -1.00 16 2 C -0.12 -1.55 0.88 -154.10 -0.14 -1.69 16 3 C 0.53 8.10 6.49 -10.98 -0.07 8.03 16 4 O -0.54 -9.77 15.27 5.56 0.08 -9.69 16 5 N -0.72 -9.82 5.00 -60.29 -0.30 -10.13 16 6 C 0.14 1.76 5.39 -4.04 -0.02 1.74 16 7 C 0.05 0.65 2.67 -66.19 -0.18 0.47 16 8 H 0.06 0.62 7.81 -51.93 -0.41 0.22 16 9 C -0.12 -1.16 6.50 -24.45 -0.16 -1.32 16 10 C -0.14 -1.50 6.97 -24.77 -0.17 -1.68 16 11 C 0.05 0.81 6.02 -2.84 -0.02 0.79 16 12 N -0.50 -7.73 4.33 -224.83 -0.97 -8.70 16 13 C 0.04 0.68 4.92 -4.98 -0.02 0.66 16 14 C 0.44 9.98 7.62 -10.99 -0.08 9.90 16 15 O -0.57 -15.13 15.45 5.55 0.09 -15.05 16 16 N -0.57 -13.67 5.29 -10.97 -0.06 -13.73 16 17 C -0.29 -8.03 9.68 -14.93 -0.14 -8.17 16 18 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -23.81 13.05 55.50 0.72 -23.09 16 21 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C -0.14 -1.71 6.32 -25.16 -0.16 -1.87 16 26 C 0.04 0.55 7.63 37.94 0.29 0.84 16 27 O -0.36 -6.31 11.65 -35.23 -0.41 -6.72 16 28 C 0.06 0.90 6.70 37.94 0.25 1.16 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.06 0.58 7.71 -51.93 -0.40 0.18 16 32 H 0.40 5.07 4.72 -40.82 -0.19 4.88 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 35 H 0.08 0.82 8.06 -51.93 -0.42 0.41 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.86 7.36 -51.93 -0.38 0.48 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.05 0.79 7.76 -51.93 -0.40 0.39 16 42 H 0.07 1.05 4.97 -51.93 -0.26 0.80 16 43 H 0.39 8.91 7.90 -40.82 -0.32 8.59 16 44 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 45 H 0.08 0.76 7.74 -51.93 -0.40 0.36 16 46 H 0.10 1.36 6.51 -51.92 -0.34 1.02 16 47 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.10 1.75 7.44 -51.93 -0.39 1.36 16 50 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 LS Contribution 395.06 15.07 5.95 5.95 Total: -1.00 -33.63 395.06 -8.38 -42.01 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -8.05 Total: 14.81 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -0.41 Total: 8.39 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.61 Total: -55.64 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.24 Total: -31.45 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.63 -8.38 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493149616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.624 kcal (2) G-P(sol) polarization free energy of solvation -33.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds