Wall clock time and date at job start Sat Apr 11 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50696 * 110.45720 * 2 1 4 4 O 1.21278 * 120.00275 * 241.14873 * 3 2 1 5 5 N 1.34785 * 119.99959 * 61.15063 * 3 2 1 6 6 C 1.46505 * 119.99833 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.46706 * 186.60735 * 6 5 3 8 8 H 1.08999 * 110.33112 * 299.40678 * 7 6 5 9 9 C 1.54908 * 110.37111 * 177.03676 * 7 6 5 10 10 C 1.55401 * 101.74189 * 204.19051 * 9 7 6 11 11 C 1.54313 * 102.89562 * 35.48004 * 10 9 7 12 12 N 1.47441 * 107.37582 * 337.89164 * 11 10 9 13 13 C 1.46897 * 111.00176 * 236.66080 * 12 11 10 14 14 C 1.50692 * 109.47316 * 283.76611 * 13 12 11 15 15 O 1.21290 * 120.00196 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99858 * 180.02562 * 14 13 12 17 17 C 1.37102 * 119.99888 * 179.97438 * 16 14 13 18 18 H 1.07998 * 119.99988 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99863 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00220 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 120.00014 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46946 * 89.99744 * 21 19 17 23 23 H 1.48501 * 109.47197 * 209.99907 * 21 19 17 24 24 H 1.48500 * 109.46842 * 330.00204 * 21 19 17 25 25 C 1.54508 * 110.62897 * 237.31395 * 2 1 3 26 26 C 1.54482 * 104.06620 * 241.29781 * 25 2 1 27 27 O 1.44418 * 104.80003 * 336.02122 * 26 25 2 28 28 C 1.44426 * 105.27899 * 40.51369 * 27 26 25 29 29 H 1.09003 * 109.47632 * 60.70068 * 1 2 3 30 30 H 1.09005 * 109.47546 * 180.70114 * 1 2 3 31 31 H 1.09004 * 109.47311 * 300.70204 * 1 2 3 32 32 H 0.96994 * 119.99982 * 0.02562 * 5 3 2 33 33 H 1.08995 * 109.46533 * 66.61229 * 6 5 3 34 34 H 1.08999 * 109.47132 * 306.60822 * 6 5 3 35 35 H 1.09000 * 110.99169 * 322.19402 * 9 7 6 36 36 H 1.09004 * 110.99101 * 85.96912 * 9 7 6 37 37 H 1.08995 * 110.67349 * 277.17665 * 10 9 7 38 38 H 1.08998 * 110.84656 * 153.86174 * 10 9 7 39 39 H 1.09003 * 109.88746 * 218.40233 * 11 10 9 40 40 H 1.09005 * 109.89215 * 97.38841 * 11 10 9 41 41 H 1.08997 * 109.47039 * 43.76683 * 13 12 11 42 42 H 1.08999 * 109.46915 * 163.76432 * 13 12 11 43 43 H 0.96995 * 120.00481 * 0.02562 * 16 14 13 44 44 H 0.96999 * 120.00043 * 180.02562 * 20 19 17 45 45 H 1.08994 * 110.50887 * 359.94515 * 25 2 1 46 46 H 1.09009 * 110.50857 * 122.65053 * 25 2 1 47 47 H 1.08996 * 110.37332 * 217.18906 * 26 25 2 48 48 H 1.08995 * 110.46292 * 94.90149 * 26 25 2 49 49 H 1.08999 * 110.37640 * 200.65926 * 28 27 26 50 50 H 1.08993 * 110.46955 * 78.36412 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0566 1.4119 0.0000 4 8 2.7434 1.8030 -0.9199 5 7 1.7644 2.2402 1.0224 6 6 2.2770 3.6127 1.0227 7 6 1.9435 4.2812 2.3578 8 1 0.8641 4.3140 2.5058 9 6 2.5409 5.7096 2.4097 10 6 2.6668 5.9442 3.9407 11 6 3.0383 4.5448 4.4743 12 7 2.5941 3.5591 3.4718 13 6 1.6790 2.5771 4.0685 14 6 2.4675 1.5896 4.8894 15 8 3.6732 1.6938 4.9699 16 7 1.8329 0.5905 5.5341 17 6 2.5504 -0.3082 6.2805 18 1 3.6240 -0.2154 6.3522 19 6 1.8963 -1.3385 6.9448 20 7 0.5900 -1.4518 6.8572 21 14 2.8737 -2.5627 7.9624 22 1 2.9863 -2.0680 9.3581 23 1 2.1806 -3.8760 7.9571 24 1 4.2315 -2.7172 7.3811 25 6 2.0743 -0.7809 -1.2170 26 6 2.8801 -1.9400 -0.5896 27 8 3.2417 -1.4678 0.7265 28 6 2.0712 -0.7797 1.2189 29 1 -0.3634 0.5029 -0.8962 30 1 -0.3634 -1.0276 0.0126 31 1 -0.3634 0.5247 0.8836 32 1 1.2155 1.9273 1.7583 33 1 1.8147 4.1731 0.2102 34 1 3.3580 3.5968 0.8842 35 1 3.5192 5.7413 1.9302 36 1 1.8629 6.4331 1.9570 37 1 1.7164 6.2762 4.3586 38 1 3.4570 6.6624 4.1594 39 1 2.5324 4.3631 5.4225 40 1 4.1175 4.4744 4.6108 41 1 0.9618 3.0909 4.7086 42 1 1.1467 2.0490 3.2774 43 1 0.8688 0.5069 5.4695 44 1 0.1333 -2.1708 7.3212 45 1 1.2534 -1.1689 -1.8200 46 1 2.7243 -0.1456 -1.8188 47 1 3.7742 -2.1431 -1.1788 48 1 2.2639 -2.8360 -0.5153 49 1 2.3441 -0.0914 2.0188 50 1 1.3287 -1.4952 1.5718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493149616.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:41 Heat of formation + Delta-G solvation = -134.028531 kcal Electronic energy + Delta-G solvation = -31761.900194 eV Core-core repulsion = 27595.011589 eV Total energy + Delta-G solvation = -4166.888604 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.81265 -40.76523 -39.56854 -39.06020 -35.96916 -35.75713 -34.73356 -33.44664 -32.93436 -31.36309 -30.35255 -28.33205 -27.42057 -26.54153 -25.82004 -24.26682 -23.07838 -22.21255 -21.53819 -20.94401 -20.32454 -19.84336 -18.47302 -17.65730 -17.49743 -17.27637 -17.00669 -16.60147 -16.50314 -16.38641 -15.90003 -15.83283 -15.58957 -15.51335 -14.97963 -14.80014 -14.44143 -14.08679 -13.88003 -13.78594 -13.61228 -13.55085 -13.32924 -13.13271 -12.93845 -12.76979 -12.67887 -12.47592 -12.39772 -12.31351 -12.20028 -12.13366 -12.04655 -11.99883 -11.66853 -11.55317 -11.47594 -11.05419 -10.63259 -10.32813 -10.09646 -9.97103 -9.21821 -8.44612 -5.91567 1.36719 1.41340 1.52291 1.52953 2.03211 2.14567 2.28668 2.71810 2.96454 3.20826 3.27999 3.32604 3.51995 3.70103 3.74338 3.77898 3.94474 4.03613 4.12200 4.17418 4.20971 4.26160 4.28003 4.35719 4.45853 4.49428 4.59104 4.60122 4.64913 4.70462 4.76100 4.79320 4.85016 4.90840 4.92644 4.99390 5.09147 5.10917 5.17828 5.19052 5.36670 5.42997 5.43692 5.76489 5.89876 6.04356 6.14055 6.41187 6.64123 7.13354 7.16966 7.59403 8.17079 8.72334 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007558 B = 0.005039 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3703.959892 B = 5555.028386 C = 8450.437805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 C 0.525 3.475 4 O -0.576 6.576 5 N -0.715 5.715 6 C 0.137 3.863 7 C 0.059 3.941 8 H 0.086 0.914 9 C -0.110 4.110 10 C -0.129 4.129 11 C 0.052 3.948 12 N -0.526 5.526 13 C 0.056 3.944 14 C 0.440 3.560 15 O -0.615 6.615 16 N -0.571 5.571 17 C -0.328 4.328 18 H 0.071 0.929 19 C -0.006 4.006 20 N -0.915 5.915 21 Si 0.982 3.018 22 H -0.271 1.271 23 H -0.269 1.269 24 H -0.279 1.279 25 C -0.136 4.136 26 C 0.037 3.963 27 O -0.406 6.406 28 C 0.058 3.942 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.401 0.599 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.050 0.950 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.115 0.885 46 H 0.077 0.923 47 H 0.097 0.903 48 H 0.083 0.917 49 H 0.065 0.935 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.251 8.643 -13.523 18.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 C 0.312 3.688 4 O -0.456 6.456 5 N -0.368 5.368 6 C 0.013 3.987 7 C -0.049 4.049 8 H 0.104 0.896 9 C -0.148 4.148 10 C -0.167 4.167 11 C -0.076 4.076 12 N -0.251 5.251 13 C -0.076 4.076 14 C 0.227 3.773 15 O -0.500 6.500 16 N -0.209 5.209 17 C -0.457 4.457 18 H 0.089 0.911 19 C -0.206 4.206 20 N -0.556 5.556 21 Si 0.807 3.193 22 H -0.197 1.197 23 H -0.193 1.193 24 H -0.205 1.205 25 C -0.174 4.174 26 C -0.039 4.039 27 O -0.326 6.326 28 C -0.019 4.019 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.240 0.760 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.128 0.872 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.133 0.867 46 H 0.095 0.905 47 H 0.115 0.885 48 H 0.102 0.898 49 H 0.084 0.916 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.465 8.561 -14.094 17.712 hybrid contribution -0.559 -0.669 1.477 1.716 sum -7.024 7.891 -12.617 16.456 Atomic orbital electron populations 1.21850 0.88345 1.04905 1.03723 1.22230 1.00055 0.91740 0.97677 1.20602 0.79082 0.87625 0.81509 1.90614 1.39887 1.77629 1.37462 1.46146 1.53541 1.13680 1.23460 1.21441 0.99014 0.81158 0.97077 1.22960 0.98549 0.93900 0.89499 0.89586 1.22697 1.02182 0.93667 0.96281 1.22816 1.03020 0.95400 0.95504 1.22677 1.00250 0.91182 0.93445 1.62962 1.37590 1.15002 1.09530 1.22018 0.93519 0.94146 0.97902 1.20774 0.88488 0.84197 0.83857 1.90519 1.16545 1.76186 1.66778 1.41854 1.09801 1.25276 1.43977 1.19524 0.92745 1.07194 1.26269 0.91068 1.25844 0.96749 0.99310 0.98714 1.69637 1.07912 1.33995 1.44046 0.85086 0.77959 0.77829 0.78443 1.19680 1.19349 1.20472 1.23039 1.01419 0.96455 0.96486 1.23695 1.00554 0.96950 0.82721 1.89179 1.36240 1.74177 1.32977 1.23548 0.88228 0.95244 0.94917 0.90322 0.89073 0.91094 0.75979 0.89346 0.93351 0.90909 0.87246 0.89675 0.89481 0.94118 0.93144 0.90424 0.88522 0.76964 0.91350 0.86663 0.90460 0.88467 0.89838 0.91610 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.21 71.98 0.59 -1.58 16 2 C -0.11 -2.82 0.88 -51.91 -0.05 -2.87 16 3 C 0.52 15.84 6.49 87.65 0.57 16.41 16 4 O -0.58 -21.10 15.27 -3.02 -0.05 -21.15 16 5 N -0.72 -18.99 5.00 -463.05 -2.31 -21.31 16 6 C 0.14 3.38 5.39 86.38 0.47 3.84 16 7 C 0.06 1.26 2.67 45.39 0.12 1.39 16 8 H 0.09 1.45 7.81 -2.39 -0.02 1.44 16 9 C -0.11 -1.87 6.50 32.07 0.21 -1.66 16 10 C -0.13 -2.42 6.97 31.87 0.22 -2.20 16 11 C 0.05 1.55 6.02 86.64 0.52 2.07 16 12 N -0.53 -16.20 4.33 -865.22 -3.75 -19.95 16 13 C 0.06 1.81 4.92 85.55 0.42 2.23 16 14 C 0.44 20.53 7.62 87.65 0.67 21.19 16 15 O -0.62 -34.64 15.45 -3.06 -0.05 -34.69 16 16 N -0.57 -28.33 5.29 -306.99 -1.62 -29.95 16 17 C -0.33 -18.46 9.68 84.04 0.81 -17.65 16 18 H 0.07 4.39 7.16 -2.91 -0.02 4.37 16 19 C -0.01 -0.32 5.50 84.93 0.47 0.15 16 20 N -0.91 -47.77 13.05 21.66 0.28 -47.49 16 21 Si 0.98 43.16 29.55 68.60 2.03 45.19 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 C -0.14 -3.12 6.32 31.61 0.20 -2.92 16 26 C 0.04 0.91 7.63 72.49 0.55 1.46 16 27 O -0.41 -14.52 11.65 -148.98 -1.74 -16.25 16 28 C 0.06 1.80 6.70 72.49 0.49 2.28 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.21 8.12 -2.38 -0.02 1.19 16 31 H 0.07 1.08 7.71 -2.38 -0.02 1.06 16 32 H 0.40 9.76 4.72 -92.71 -0.44 9.33 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.50 8.11 -2.39 -0.02 1.48 16 35 H 0.07 1.37 8.06 -2.39 -0.02 1.35 16 36 H 0.11 1.18 8.14 -2.38 -0.02 1.17 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.04 1.29 7.36 -2.39 -0.02 1.27 16 40 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.08 2.17 7.76 -2.39 -0.02 2.15 16 42 H 0.10 2.65 4.97 -2.39 -0.01 2.64 16 43 H 0.40 18.28 7.90 -92.71 -0.73 17.55 16 44 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 45 H 0.12 1.81 7.74 -2.39 -0.02 1.79 16 46 H 0.08 2.13 6.51 -2.38 -0.02 2.11 16 47 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.07 2.44 7.44 -2.39 -0.02 2.42 16 50 H 0.09 2.43 7.85 -2.39 -0.02 2.41 16 Total: -1.00 -77.74 395.06 -1.15 -78.89 By element: Atomic # 1 Polarization: 44.74 SS G_CDS: -0.21 Total: 44.53 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 6.26 Total: 22.17 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -7.40 Total: -118.70 kcal Atomic # 8 Polarization: -70.26 SS G_CDS: -1.83 Total: -72.09 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -77.74 -1.15 -78.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493149616.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.134 kcal (2) G-P(sol) polarization free energy of solvation -77.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds