Wall clock time and date at job start Sat Apr 11 2020 05:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99977 * 2 1 4 4 C 1.50698 * 120.00099 * 180.02562 * 2 1 3 5 5 H 1.08996 * 110.33227 * 128.24014 * 4 2 1 6 6 O 1.44419 * 110.37474 * 5.86799 * 4 2 1 7 7 C 1.44420 * 105.27895 * 200.66119 * 6 4 2 8 8 C 1.54479 * 104.80432 * 40.51061 * 7 6 4 9 9 C 1.54481 * 110.37216 * 250.48985 * 4 2 1 10 10 H 1.09004 * 110.51155 * 261.59277 * 9 4 2 11 11 C 1.50698 * 110.51171 * 24.16153 * 9 4 2 12 12 O 1.21282 * 119.99950 * 61.91867 * 11 9 4 13 13 N 1.34773 * 120.00507 * 241.92593 * 11 9 4 14 14 C 1.46504 * 119.99774 * 355.26587 * 13 11 9 15 15 C 1.46502 * 120.00508 * 175.27281 * 13 11 9 16 16 C 1.53003 * 109.47278 * 89.99408 * 15 13 11 17 17 N 1.46897 * 109.47390 * 180.02562 * 16 15 13 18 18 C 1.46898 * 111.00008 * 180.02562 * 17 16 15 19 19 C 1.50705 * 109.46970 * 179.97438 * 18 17 16 20 20 O 1.21294 * 119.99755 * 0.02562 * 19 18 17 21 21 N 1.34773 * 120.00093 * 179.97438 * 19 18 17 22 22 C 1.37095 * 120.00205 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99996 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99865 * 179.72413 * 22 21 19 25 25 N 1.31404 * 120.00447 * 0.27899 * 24 22 21 26 26 Si 1.86802 * 119.99788 * 180.27570 * 24 22 21 27 27 H 1.48502 * 109.47174 * 90.00082 * 26 24 22 28 28 H 1.48498 * 109.47222 * 209.99945 * 26 24 22 29 29 H 1.48499 * 109.47129 * 330.00622 * 26 24 22 30 30 H 1.07996 * 119.99930 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99982 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47016 * 244.93094 * 3 2 1 33 33 H 1.08999 * 109.47012 * 4.92748 * 3 2 1 34 34 H 1.08997 * 109.47157 * 124.93481 * 3 2 1 35 35 H 1.09005 * 110.37439 * 159.34460 * 7 6 4 36 36 H 1.09000 * 110.36985 * 281.68151 * 7 6 4 37 37 H 1.09003 * 110.51308 * 217.37995 * 8 7 6 38 38 H 1.08999 * 110.50971 * 94.66861 * 8 7 6 39 39 H 1.08997 * 109.47159 * 275.21755 * 14 13 11 40 40 H 1.09003 * 109.47009 * 35.21929 * 14 13 11 41 41 H 1.09003 * 109.47090 * 155.21326 * 14 13 11 42 42 H 1.08992 * 109.46978 * 329.99823 * 15 13 11 43 43 H 1.09000 * 109.47040 * 209.99461 * 15 13 11 44 44 H 1.09006 * 109.46842 * 60.00159 * 16 15 13 45 45 H 1.08998 * 109.47490 * 300.00677 * 16 15 13 46 46 H 1.00896 * 111.00130 * 56.04134 * 17 16 15 47 47 H 1.09002 * 109.47565 * 60.00025 * 18 17 16 48 48 H 1.08996 * 109.46817 * 299.99754 * 18 17 16 49 49 H 0.96999 * 119.99908 * 359.97438 * 21 19 18 50 50 H 0.96995 * 120.00200 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 2.8007 -1.3164 -0.8033 6 8 1.1486 -2.4138 -0.1395 7 6 1.8660 -3.5639 0.3589 8 6 2.6184 -3.0497 1.6063 9 6 2.7513 -1.5296 1.3644 10 1 3.8007 -1.2388 1.3157 11 6 2.0408 -0.7585 2.4468 12 8 0.8821 -1.0054 2.7064 13 7 2.6928 0.2056 3.1263 14 6 4.1198 0.4340 2.8857 15 6 1.9748 1.0250 4.1057 16 6 2.0515 0.3599 5.4814 17 7 1.3310 1.1812 6.4634 18 6 1.3841 0.5724 7.7992 19 6 0.6366 1.4416 8.7774 20 8 0.1109 2.4671 8.3989 21 7 0.5512 1.0789 10.0726 22 6 -0.1283 1.8698 10.9626 23 1 -0.5956 2.7833 10.6258 24 6 -0.2211 1.4929 12.2969 25 7 0.3471 0.3812 12.7067 26 14 -1.1536 2.5667 13.5080 27 1 -2.5773 2.1464 13.5480 28 1 -0.5565 2.4216 14.8599 29 1 -1.0684 3.9858 13.0789 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 2.6223 1.4021 -0.9309 33 1 1.3585 2.1317 0.0883 34 1 2.7548 1.3256 0.8425 35 1 1.1692 -4.3553 0.6354 36 1 2.5727 -3.9236 -0.3889 37 1 3.6026 -3.5128 1.6766 38 1 2.0387 -3.2436 2.5088 39 1 4.7058 -0.2523 3.4970 40 1 4.3426 0.2632 1.8324 41 1 4.3727 1.4612 3.1486 42 1 0.9313 1.1191 3.8054 43 1 2.4295 2.0145 4.1546 44 1 3.0951 0.2658 5.7818 45 1 1.5969 -0.6296 5.4325 46 1 0.3770 1.3369 6.1741 47 1 2.4231 0.4804 8.1156 48 1 0.9254 -0.4158 7.7664 49 1 0.9706 0.2582 10.3751 50 1 0.2820 0.1179 13.6380 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493725536.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:45 Heat of formation + Delta-G solvation = -110.069075 kcal Electronic energy + Delta-G solvation = -29911.226014 eV Core-core repulsion = 25745.376370 eV Total energy + Delta-G solvation = -4165.849644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.84714 -40.21790 -39.62560 -37.41469 -36.26672 -35.99594 -35.70367 -33.45926 -33.27697 -31.06221 -29.63271 -28.20672 -27.97671 -27.25795 -25.92431 -24.63268 -23.46686 -22.53732 -21.16936 -20.42262 -19.93975 -19.28743 -18.47094 -17.92317 -17.45394 -17.13083 -17.03639 -16.74787 -16.49136 -16.26792 -16.06168 -15.84652 -15.31711 -15.07605 -14.90505 -14.70567 -14.34096 -14.17456 -13.97261 -13.95801 -13.86517 -13.56070 -13.50883 -13.23476 -13.05061 -12.92517 -12.73592 -12.65559 -12.60507 -12.43932 -12.28225 -12.16889 -12.12701 -12.02707 -11.84415 -11.53286 -10.84120 -10.65554 -10.42107 -10.04745 -9.97957 -9.65029 -9.46067 -8.48798 -5.97968 1.25999 1.36832 1.40671 1.53848 1.60608 1.91687 2.01043 2.28429 2.86454 2.94707 3.17825 3.34209 3.48632 3.60768 3.76280 3.97392 4.00889 4.08153 4.16905 4.17343 4.26070 4.27713 4.28285 4.38619 4.43724 4.49154 4.53691 4.55325 4.64119 4.73212 4.78936 4.79620 4.82830 4.86590 4.93945 4.98420 5.01180 5.06879 5.13876 5.38754 5.48448 5.60592 5.73770 5.81531 6.03402 6.07772 6.24344 6.41702 6.56828 7.09578 7.23136 7.52236 8.07330 8.68692 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022225 B = 0.001889 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.549835 B =14819.575724 C =15078.917860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.151 4.151 3 C -0.113 4.113 4 C 0.128 3.872 5 H 0.115 0.885 6 O -0.392 6.392 7 C 0.043 3.957 8 C -0.137 4.137 9 C -0.137 4.137 10 H 0.145 0.855 11 C 0.521 3.479 12 O -0.571 6.571 13 N -0.611 5.611 14 C 0.063 3.937 15 C 0.127 3.873 16 C 0.056 3.944 17 N -0.675 5.675 18 C 0.067 3.933 19 C 0.438 3.562 20 O -0.622 6.622 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.995 3.005 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.272 1.272 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.015 0.985 46 H 0.342 0.658 47 H 0.109 0.891 48 H 0.058 0.942 49 H 0.397 0.603 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.687 -7.295 -28.046 32.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.169 4.169 4 C 0.070 3.930 5 H 0.133 0.867 6 O -0.311 6.311 7 C -0.034 4.034 8 C -0.175 4.175 9 C -0.158 4.158 10 H 0.162 0.838 11 C 0.310 3.690 12 O -0.449 6.449 13 N -0.344 5.344 14 C -0.079 4.079 15 C 0.003 3.997 16 C -0.074 4.074 17 N -0.307 5.307 18 C -0.066 4.066 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.818 3.182 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.197 1.197 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.138 0.862 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.120 0.880 44 H 0.106 0.894 45 H 0.033 0.967 46 H 0.160 0.840 47 H 0.127 0.873 48 H 0.076 0.924 49 H 0.230 0.770 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.081 -6.405 -27.934 31.932 hybrid contribution -1.286 -0.813 1.201 1.939 sum 12.795 -7.218 -26.733 30.503 Atomic orbital electron populations 1.23623 0.96340 1.01119 0.99606 1.21786 0.95615 0.95443 1.02231 1.20872 1.00323 0.92203 1.03512 1.21826 0.90655 0.85473 0.95037 0.86738 1.89152 1.39262 1.18036 1.84670 1.23584 0.96192 0.88898 0.94696 1.22947 1.03198 0.92140 0.99236 1.22966 1.02863 0.96569 0.93449 0.83776 1.20754 0.86470 0.79637 0.82102 1.90724 1.19312 1.66927 1.67951 1.47908 1.11918 1.34981 1.39593 1.22255 0.78116 1.04089 1.03400 1.21209 0.97659 0.94474 0.86315 1.22263 0.99478 0.93764 0.91862 1.60059 1.21286 1.48590 1.00744 1.21522 1.01458 0.94738 0.88887 1.20793 0.85052 0.88090 0.83571 1.90488 1.52663 1.28816 1.78901 1.41926 1.48544 1.23497 1.06951 1.19683 1.31271 1.05658 0.89839 0.90268 1.26081 0.98252 0.98092 0.98926 1.69669 1.44528 1.23544 1.18359 0.84902 0.78120 0.78076 0.77076 1.19697 1.19350 1.19673 0.88658 0.89769 0.89279 0.92351 0.90604 0.89304 0.89020 0.86211 0.92655 0.91101 0.88540 0.89080 0.92607 0.87954 0.89379 0.96719 0.84045 0.87268 0.92432 0.76960 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 13.00 67.78 0.88 -3.19 16 2 C -0.15 -2.81 3.73 -16.49 -0.06 -2.87 16 3 C -0.11 -1.43 9.96 71.24 0.71 -0.72 16 4 C 0.13 1.97 3.52 30.35 0.11 2.08 16 5 H 0.12 1.04 8.14 -2.39 -0.02 1.03 16 6 O -0.39 -8.26 9.82 -148.98 -1.46 -9.72 16 7 C 0.04 0.58 7.63 72.48 0.55 1.13 16 8 C -0.14 -1.76 6.63 31.61 0.21 -1.55 16 9 C -0.14 -1.82 2.99 -10.53 -0.03 -1.85 16 10 H 0.14 0.71 5.57 -2.39 -0.01 0.70 16 11 C 0.52 11.08 4.45 87.66 0.39 11.47 16 12 O -0.57 -18.34 15.24 -3.04 -0.05 -18.39 16 13 N -0.61 -10.34 2.35 -846.75 -1.99 -12.33 16 14 C 0.06 0.45 9.23 127.77 1.18 1.62 16 15 C 0.13 2.84 5.67 86.38 0.49 3.33 16 16 C 0.06 1.46 6.01 86.30 0.52 1.98 16 17 N -0.67 -22.75 6.12 -517.93 -3.17 -25.92 16 18 C 0.07 2.43 6.17 85.56 0.53 2.95 16 19 C 0.44 21.65 7.82 87.66 0.69 22.33 16 20 O -0.62 -35.62 15.78 -3.07 -0.05 -35.67 16 21 N -0.57 -30.25 5.29 -306.98 -1.62 -31.88 16 22 C -0.34 -19.46 9.68 84.04 0.81 -18.64 16 23 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 24 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 25 N -0.92 -50.39 13.05 21.66 0.28 -50.11 16 26 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 29 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 30 H 0.10 2.14 7.84 -2.91 -0.02 2.12 16 31 H 0.08 2.39 6.90 -2.91 -0.02 2.37 16 32 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.06 0.85 7.79 -2.39 -0.02 0.83 16 34 H 0.08 0.82 5.56 -2.39 -0.01 0.80 16 35 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.05 1.06 7.50 -2.39 -0.02 1.04 16 39 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.10 0.20 5.50 -2.39 -0.01 0.18 16 41 H 0.09 0.49 7.83 -2.39 -0.02 0.48 16 42 H 0.06 1.56 7.49 -2.39 -0.02 1.54 16 43 H 0.10 1.97 7.86 -2.39 -0.02 1.96 16 44 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 45 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.34 12.61 8.43 -89.70 -0.76 11.85 16 47 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 48 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.40 19.87 7.90 -92.71 -0.73 19.14 16 50 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -80.22 403.57 0.88 -79.34 By element: Atomic # 1 Polarization: 41.80 SS G_CDS: -0.53 Total: 41.27 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 7.44 Total: 17.79 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -6.51 Total: -120.23 kcal Atomic # 8 Polarization: -62.22 SS G_CDS: -1.56 Total: -63.78 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -80.22 0.88 -79.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493725536.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.725 kcal (2) G-P(sol) polarization free energy of solvation -80.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds