Wall clock time and date at job start Sat Apr 11 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30181 * 126.80797 * 2 1 4 4 O 1.20920 * 111.60598 * 180.25119 * 3 2 1 5 5 C 1.34030 * 111.56755 * 359.74508 * 4 3 2 6 6 C 1.50703 * 126.77463 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44986 * 0.02562 * 5 4 3 8 8 C 1.50699 * 128.00662 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.47560 * 0.02562 * 8 7 5 10 10 C 1.53007 * 109.47129 * 120.00221 * 8 7 5 11 11 C 1.50696 * 109.47043 * 239.99472 * 8 7 5 12 12 O 1.21284 * 120.00132 * 0.02562 * 11 8 7 13 13 N 1.34779 * 120.00057 * 179.97438 * 11 8 7 14 14 C 1.46505 * 119.99730 * 179.72382 * 13 11 8 15 15 C 1.53010 * 109.46753 * 180.27628 * 14 13 11 16 16 O 1.42896 * 109.46677 * 65.00394 * 15 14 13 17 17 C 1.42902 * 113.99604 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47012 * 180.02562 * 17 16 15 19 19 N 1.46502 * 109.47230 * 65.00081 * 18 17 16 20 20 C 1.46496 * 119.99873 * 269.99822 * 19 18 17 21 21 C 1.36934 * 120.00065 * 90.00086 * 19 18 17 22 22 H 1.08000 * 120.00442 * 22.70347 * 21 19 18 23 23 C 1.38813 * 119.99940 * 202.70643 * 21 19 18 24 24 N 1.31617 * 120.00201 * 11.51637 * 23 21 19 25 25 Si 1.86802 * 119.99953 * 191.51305 * 23 21 19 26 26 H 1.48496 * 109.47373 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47317 * 120.00041 * 25 23 21 28 28 H 1.48500 * 109.47167 * 239.99788 * 25 23 21 29 29 H 1.08997 * 109.47262 * 270.17263 * 1 2 3 30 30 H 1.09005 * 109.46841 * 30.16709 * 1 2 3 31 31 H 1.08998 * 109.47362 * 150.16318 * 1 2 3 32 32 H 1.09000 * 109.47511 * 269.99746 * 6 5 4 33 33 H 1.08999 * 109.47507 * 30.00383 * 6 5 4 34 34 H 1.09002 * 109.47198 * 149.99897 * 6 5 4 35 35 H 1.08991 * 109.47209 * 179.97438 * 10 8 7 36 36 H 1.09004 * 109.46524 * 299.99177 * 10 8 7 37 37 H 1.08993 * 109.47374 * 59.99508 * 10 8 7 38 38 H 0.96993 * 120.00248 * 0.02562 * 13 11 8 39 39 H 1.08994 * 109.47299 * 300.27725 * 14 13 11 40 40 H 1.08998 * 109.46874 * 60.28426 * 14 13 11 41 41 H 1.08996 * 109.46766 * 185.00406 * 15 14 13 42 42 H 1.09001 * 109.47113 * 305.00457 * 15 14 13 43 43 H 1.09001 * 109.47276 * 299.99877 * 17 16 15 44 44 H 1.08999 * 109.47430 * 60.00152 * 17 16 15 45 45 H 1.09009 * 109.47067 * 184.99876 * 18 17 16 46 46 H 1.08998 * 109.47389 * 305.00210 * 18 17 16 47 47 H 1.08999 * 109.46919 * 93.91544 * 20 19 18 48 48 H 1.09005 * 109.47258 * 213.91475 * 20 19 18 49 49 H 1.08992 * 109.47463 * 333.91585 * 20 19 18 50 50 H 0.97005 * 120.00329 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7252 -0.0049 5 6 3.6024 -0.6068 -0.0034 6 6 4.9021 -1.3696 -0.0088 7 6 2.3538 -1.1320 0.0027 8 6 1.9590 -2.5864 0.0062 9 1 2.8555 -3.2064 0.0035 10 6 1.1347 -2.8881 1.2595 11 6 1.1363 -2.8864 -1.2202 12 8 0.8948 -2.0061 -2.0187 13 7 0.6697 -4.1333 -1.4302 14 6 -0.1352 -4.4236 -2.6194 15 6 -0.5403 -5.8991 -2.6133 16 8 -1.4027 -6.1516 -1.5023 17 6 -1.8419 -7.5079 -1.4041 18 6 -2.7547 -7.6614 -0.1858 19 7 -3.9731 -6.8729 -0.3861 20 6 -4.0241 -5.4779 0.0582 21 6 -5.0643 -7.4400 -0.9885 22 1 -5.1853 -8.5132 -0.9867 23 6 -6.0150 -6.6354 -1.6015 24 7 -5.7646 -5.3595 -1.8055 25 14 -7.6497 -7.3636 -2.1371 26 1 -7.6829 -8.8088 -1.7974 27 1 -8.7566 -6.6643 -1.4362 28 1 -7.8091 -7.1966 -3.6040 29 1 -0.3633 0.0031 1.0276 30 1 -0.3633 0.8885 -0.5165 31 1 -0.3634 -0.8914 -0.5113 32 1 5.2102 -1.5554 -1.0377 33 1 5.6685 -0.7852 0.5002 34 1 4.7676 -2.3202 0.5074 35 1 0.8487 -3.9398 1.2618 36 1 1.7298 -2.6711 2.1466 37 1 0.2383 -2.2681 1.2627 38 1 0.8631 -4.8375 -0.7918 39 1 -1.0299 -3.8011 -2.6133 40 1 0.4493 -4.2110 -3.5145 41 1 -1.0627 -6.1361 -3.5401 42 1 0.3515 -6.5203 -2.5297 43 1 -2.3916 -7.7780 -2.3057 44 1 -0.9775 -8.1629 -1.2956 45 1 -3.0182 -8.7115 -0.0592 46 1 -2.2351 -7.3072 0.7045 47 1 -3.7554 -4.8227 -0.7705 48 1 -5.0329 -5.2409 0.3964 49 1 -3.3221 -5.3320 0.8790 50 1 -6.4290 -4.7971 -2.2336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506977243.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:45 Heat of formation + Delta-G solvation = -6.752729 kcal Electronic energy + Delta-G solvation = -30380.965790 eV Core-core repulsion = 26219.596279 eV Total energy + Delta-G solvation = -4161.369511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.98677 -39.95385 -37.71392 -35.91078 -35.37619 -34.47383 -33.84670 -32.23634 -31.41648 -29.41715 -28.72667 -27.89509 -27.68992 -25.72316 -25.03438 -23.11538 -22.90075 -21.73171 -20.39238 -20.31685 -20.05787 -17.84030 -17.35535 -16.90345 -16.69943 -16.21546 -16.13637 -15.38595 -15.23079 -14.71575 -14.37842 -14.27853 -13.96866 -13.74918 -13.62286 -13.37826 -13.31265 -13.16708 -13.10332 -12.86066 -12.77976 -12.52292 -12.29801 -12.16914 -12.00700 -11.75044 -11.55563 -11.40239 -10.94398 -10.89914 -10.87065 -10.77929 -10.52571 -10.08394 -9.93640 -9.90681 -9.82565 -9.73814 -9.24947 -9.05170 -9.01320 -8.50120 -6.68437 -5.66752 -3.13169 1.34597 2.14737 2.60650 2.97531 3.23246 3.38430 3.45558 3.47365 4.07981 4.12961 4.32319 4.44060 4.52979 4.63729 4.80503 4.87271 5.05645 5.07470 5.12247 5.17144 5.25662 5.34022 5.43919 5.50451 5.51336 5.54754 5.55356 5.62022 5.64643 5.69816 5.76984 5.85402 5.93912 5.98083 6.07978 6.17209 6.20404 6.20557 6.44733 6.52557 6.74223 6.93122 7.49848 7.50255 7.75068 7.82302 7.96237 8.21662 8.25263 8.44885 9.29461 9.93134 10.43308 11.37205 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018091 B = 0.002395 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.354592 B =11690.171850 C =12314.352909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.056 3.944 3 N -0.373 5.373 4 O 0.093 5.907 5 C -0.033 4.033 6 C -0.073 4.073 7 C -0.178 4.178 8 C -0.030 4.030 9 H 0.106 0.894 10 C -0.145 4.145 11 C 0.515 3.485 12 O -0.532 6.532 13 N -0.717 5.717 14 C 0.125 3.875 15 C 0.051 3.949 16 O -0.366 6.366 17 C 0.042 3.958 18 C 0.153 3.847 19 N -0.596 5.596 20 C 0.175 3.825 21 C -0.257 4.257 22 H 0.067 0.933 23 C 0.002 3.998 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.403 0.597 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.048 0.952 44 H 0.024 0.976 45 H 0.058 0.942 46 H 0.043 0.957 47 H 0.032 0.968 48 H 0.037 0.963 49 H -0.008 1.008 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.065 3.013 4.813 22.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 N -0.081 5.081 4 O 0.030 5.970 5 C -0.097 4.097 6 C -0.131 4.131 7 C -0.182 4.182 8 C -0.052 4.052 9 H 0.124 0.876 10 C -0.203 4.203 11 C 0.301 3.699 12 O -0.408 6.408 13 N -0.369 5.369 14 C 0.002 3.998 15 C -0.027 4.027 16 O -0.285 6.285 17 C -0.037 4.037 18 C 0.025 3.975 19 N -0.319 5.319 20 C 0.031 3.969 21 C -0.387 4.387 22 H 0.084 0.916 23 C -0.196 4.196 24 N -0.546 5.546 25 Si 0.731 3.269 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.218 1.218 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.238 0.762 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.043 0.957 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.011 0.989 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 21.482 5.247 4.295 22.527 hybrid contribution -0.864 -1.678 -0.539 1.963 sum 20.619 3.569 3.756 21.260 Atomic orbital electron populations 1.20286 0.85954 1.04748 1.02737 1.23295 0.98898 0.87893 1.00259 1.73821 0.89145 1.23871 1.21220 1.84784 1.21867 1.22083 1.68227 1.24129 0.97807 0.84260 1.03458 1.20330 0.90183 0.98492 1.04068 1.20282 0.91785 0.95916 1.10247 1.19523 0.99631 0.91110 0.94919 0.87620 1.21833 1.00315 1.02904 0.95211 1.20352 0.80172 0.82420 0.87005 1.90727 1.58124 1.45411 1.46572 1.45886 1.53784 1.10971 1.26240 1.21400 0.95500 0.95548 0.87400 1.22601 0.93577 0.94528 0.92005 1.88008 1.65606 1.28904 1.45991 1.23521 0.95987 0.81522 1.02668 1.20891 0.87236 0.95849 0.93560 1.43884 1.09193 1.10115 1.68662 1.20681 0.97117 0.84609 0.94531 1.19229 0.98579 0.91688 1.29170 0.91560 1.25035 0.99585 0.96157 0.98859 1.70101 1.33702 1.04890 1.45925 0.86242 0.84310 0.78355 0.77950 1.20429 1.21668 1.21848 0.90509 0.90686 0.89175 0.89477 0.89789 0.89185 0.90914 0.91295 0.91299 0.76248 0.90089 0.90616 0.92104 0.93850 0.93331 0.95748 0.92405 0.93864 0.94981 0.94451 0.98898 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 8.93 36.00 0.32 -0.71 16 2 C 0.06 0.77 6.69 -82.10 -0.55 0.22 16 3 N -0.37 -5.46 12.07 33.42 0.40 -5.06 16 4 O 0.09 1.19 11.20 17.20 0.19 1.38 16 5 C -0.03 -0.34 7.49 -35.30 -0.26 -0.60 16 6 C -0.07 -0.39 10.17 36.01 0.37 -0.03 16 7 C -0.18 -2.07 4.47 -104.42 -0.47 -2.54 16 8 C -0.03 -0.29 3.02 -92.92 -0.28 -0.57 16 9 H 0.11 0.69 7.13 -51.93 -0.37 0.32 16 10 C -0.15 -1.25 9.00 37.16 0.33 -0.91 16 11 C 0.52 6.53 6.43 -10.99 -0.07 6.46 16 12 O -0.53 -8.84 13.97 5.55 0.08 -8.76 16 13 N -0.72 -8.34 5.40 -60.29 -0.33 -8.66 16 14 C 0.12 1.67 6.06 -4.03 -0.02 1.65 16 15 C 0.05 0.69 6.07 37.16 0.23 0.92 16 16 O -0.37 -6.45 9.84 -35.23 -0.35 -6.79 16 17 C 0.04 0.75 6.28 37.16 0.23 0.98 16 18 C 0.15 3.01 6.11 -4.04 -0.02 2.98 16 19 N -0.60 -14.85 2.89 -181.12 -0.52 -15.38 16 20 C 0.18 4.40 8.61 59.84 0.52 4.92 16 21 C -0.26 -6.99 9.67 -15.06 -0.15 -7.13 16 22 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 23 C 0.00 0.06 5.12 -17.43 -0.09 -0.03 16 24 N -0.90 -26.42 10.62 55.49 0.59 -25.83 16 25 Si 0.90 21.82 29.57 -169.99 -5.03 16.79 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 29 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 1.29 5.79 -51.93 -0.30 0.98 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.09 0.32 7.39 -51.93 -0.38 -0.06 16 35 H 0.07 0.56 7.56 -51.93 -0.39 0.17 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.70 6.75 -51.93 -0.35 0.35 16 38 H 0.40 3.87 7.89 -40.82 -0.32 3.54 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 1.07 8.03 -51.92 -0.42 0.65 16 46 H 0.04 0.78 7.87 -51.93 -0.41 0.37 16 47 H 0.03 0.88 7.43 -51.93 -0.39 0.50 16 48 H 0.04 1.01 7.20 -51.93 -0.37 0.64 16 49 H -0.01 -0.17 7.85 -51.93 -0.41 -0.58 16 50 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 407.57 15.07 6.14 6.14 Total: -1.00 -34.72 407.57 -7.05 -41.77 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.31 Total: -1.20 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 0.08 Total: 5.60 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.14 Total: -54.93 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.08 Total: -14.17 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.72 -7.05 -41.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506977243.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.015 kcal (2) G-P(sol) polarization free energy of solvation -34.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds