Wall clock time and date at job start Sat Apr 11 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30181 * 126.80797 * 2 1 4 4 O 1.20920 * 111.60598 * 180.25119 * 3 2 1 5 5 C 1.34030 * 111.56755 * 359.74508 * 4 3 2 6 6 C 1.50703 * 126.77463 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44986 * 0.02562 * 5 4 3 8 8 C 1.50699 * 128.00662 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.47560 * 0.02562 * 8 7 5 10 10 C 1.53007 * 109.47129 * 120.00221 * 8 7 5 11 11 C 1.50696 * 109.47043 * 239.99472 * 8 7 5 12 12 O 1.21284 * 120.00132 * 0.02562 * 11 8 7 13 13 N 1.34779 * 120.00057 * 179.97438 * 11 8 7 14 14 C 1.46505 * 119.99730 * 179.72382 * 13 11 8 15 15 C 1.53010 * 109.46753 * 180.27628 * 14 13 11 16 16 O 1.42896 * 109.46677 * 65.00394 * 15 14 13 17 17 C 1.42902 * 113.99604 * 179.97438 * 16 15 14 18 18 C 1.52998 * 109.47012 * 180.02562 * 17 16 15 19 19 N 1.46502 * 109.47230 * 65.00081 * 18 17 16 20 20 C 1.46496 * 119.99873 * 269.99822 * 19 18 17 21 21 C 1.36934 * 120.00065 * 90.00086 * 19 18 17 22 22 H 1.08000 * 120.00442 * 22.70347 * 21 19 18 23 23 C 1.38813 * 119.99940 * 202.70643 * 21 19 18 24 24 N 1.31617 * 120.00201 * 11.51637 * 23 21 19 25 25 Si 1.86802 * 119.99953 * 191.51305 * 23 21 19 26 26 H 1.48496 * 109.47373 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47317 * 120.00041 * 25 23 21 28 28 H 1.48500 * 109.47167 * 239.99788 * 25 23 21 29 29 H 1.08997 * 109.47262 * 270.17263 * 1 2 3 30 30 H 1.09005 * 109.46841 * 30.16709 * 1 2 3 31 31 H 1.08998 * 109.47362 * 150.16318 * 1 2 3 32 32 H 1.09000 * 109.47511 * 269.99746 * 6 5 4 33 33 H 1.08999 * 109.47507 * 30.00383 * 6 5 4 34 34 H 1.09002 * 109.47198 * 149.99897 * 6 5 4 35 35 H 1.08991 * 109.47209 * 179.97438 * 10 8 7 36 36 H 1.09004 * 109.46524 * 299.99177 * 10 8 7 37 37 H 1.08993 * 109.47374 * 59.99508 * 10 8 7 38 38 H 0.96993 * 120.00248 * 0.02562 * 13 11 8 39 39 H 1.08994 * 109.47299 * 300.27725 * 14 13 11 40 40 H 1.08998 * 109.46874 * 60.28426 * 14 13 11 41 41 H 1.08996 * 109.46766 * 185.00406 * 15 14 13 42 42 H 1.09001 * 109.47113 * 305.00457 * 15 14 13 43 43 H 1.09001 * 109.47276 * 299.99877 * 17 16 15 44 44 H 1.08999 * 109.47430 * 60.00152 * 17 16 15 45 45 H 1.09009 * 109.47067 * 184.99876 * 18 17 16 46 46 H 1.08998 * 109.47389 * 305.00210 * 18 17 16 47 47 H 1.08999 * 109.46919 * 93.91544 * 20 19 18 48 48 H 1.09005 * 109.47258 * 213.91475 * 20 19 18 49 49 H 1.08992 * 109.47463 * 333.91585 * 20 19 18 50 50 H 0.97005 * 120.00329 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7252 -0.0049 5 6 3.6024 -0.6068 -0.0034 6 6 4.9021 -1.3696 -0.0088 7 6 2.3538 -1.1320 0.0027 8 6 1.9590 -2.5864 0.0062 9 1 2.8555 -3.2064 0.0035 10 6 1.1347 -2.8881 1.2595 11 6 1.1363 -2.8864 -1.2202 12 8 0.8948 -2.0061 -2.0187 13 7 0.6697 -4.1333 -1.4302 14 6 -0.1352 -4.4236 -2.6194 15 6 -0.5403 -5.8991 -2.6133 16 8 -1.4027 -6.1516 -1.5023 17 6 -1.8419 -7.5079 -1.4041 18 6 -2.7547 -7.6614 -0.1858 19 7 -3.9731 -6.8729 -0.3861 20 6 -4.0241 -5.4779 0.0582 21 6 -5.0643 -7.4400 -0.9885 22 1 -5.1853 -8.5132 -0.9867 23 6 -6.0150 -6.6354 -1.6015 24 7 -5.7646 -5.3595 -1.8055 25 14 -7.6497 -7.3636 -2.1371 26 1 -7.6829 -8.8088 -1.7974 27 1 -8.7566 -6.6643 -1.4362 28 1 -7.8091 -7.1966 -3.6040 29 1 -0.3633 0.0031 1.0276 30 1 -0.3633 0.8885 -0.5165 31 1 -0.3634 -0.8914 -0.5113 32 1 5.2102 -1.5554 -1.0377 33 1 5.6685 -0.7852 0.5002 34 1 4.7676 -2.3202 0.5074 35 1 0.8487 -3.9398 1.2618 36 1 1.7298 -2.6711 2.1466 37 1 0.2383 -2.2681 1.2627 38 1 0.8631 -4.8375 -0.7918 39 1 -1.0299 -3.8011 -2.6133 40 1 0.4493 -4.2110 -3.5145 41 1 -1.0627 -6.1361 -3.5401 42 1 0.3515 -6.5203 -2.5297 43 1 -2.3916 -7.7780 -2.3057 44 1 -0.9775 -8.1629 -1.2956 45 1 -3.0182 -8.7115 -0.0592 46 1 -2.2351 -7.3072 0.7045 47 1 -3.7554 -4.8227 -0.7705 48 1 -5.0329 -5.2409 0.3964 49 1 -3.3221 -5.3320 0.8790 50 1 -6.4290 -4.7971 -2.2336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506977243.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:44 Heat of formation + Delta-G solvation = -30.559874 kcal Electronic energy + Delta-G solvation = -30381.998146 eV Core-core repulsion = 26219.596279 eV Total energy + Delta-G solvation = -4162.401867 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.92905 -40.95860 -39.04044 -37.24912 -36.68283 -35.68176 -34.71771 -33.43847 -32.90228 -30.73867 -29.74424 -29.27800 -28.40674 -27.79548 -25.84204 -24.80847 -24.00329 -22.76459 -22.10818 -21.25012 -20.96586 -18.79164 -18.75526 -18.31154 -17.70219 -17.52868 -17.22211 -16.87670 -16.34045 -16.23335 -15.44742 -15.34491 -15.26806 -15.10793 -14.90522 -14.57171 -14.36067 -14.10025 -13.90902 -13.87246 -13.77969 -13.68825 -13.33910 -13.19354 -13.10435 -12.99400 -12.81484 -12.73964 -12.50826 -12.46673 -12.37912 -12.29516 -11.97113 -11.80256 -11.76452 -11.63792 -10.91187 -10.74254 -10.61304 -10.34580 -10.08764 -10.04881 -8.70857 -7.76854 -5.24455 0.51993 1.18423 1.45912 1.47530 1.57300 1.63895 2.20822 2.32642 2.53236 2.89718 3.19422 3.36492 3.54597 3.61515 3.80127 3.88161 3.96373 4.09088 4.18825 4.21494 4.37233 4.43540 4.48909 4.53867 4.57343 4.62738 4.65079 4.66558 4.71435 4.72501 4.75301 4.89169 4.90824 4.93324 4.97303 5.01070 5.04595 5.11488 5.24700 5.25159 5.34518 5.40567 5.44989 5.68289 5.86344 6.37218 6.49782 6.59202 7.20806 7.28117 7.35198 7.95117 8.39714 9.25958 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018091 B = 0.002395 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.354592 B =11690.171850 C =12314.352909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.033 3.967 3 N -0.406 5.406 4 O 0.084 5.916 5 C -0.020 4.020 6 C -0.074 4.074 7 C -0.196 4.196 8 C -0.019 4.019 9 H 0.148 0.852 10 C -0.143 4.143 11 C 0.512 3.488 12 O -0.578 6.578 13 N -0.706 5.706 14 C 0.132 3.868 15 C 0.054 3.946 16 O -0.391 6.391 17 C 0.052 3.948 18 C 0.145 3.855 19 N -0.613 5.613 20 C 0.196 3.804 21 C -0.257 4.257 22 H 0.075 0.925 23 C -0.058 4.058 24 N -0.936 5.936 25 Si 0.964 3.036 26 H -0.263 1.263 27 H -0.295 1.295 28 H -0.296 1.296 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.416 0.584 39 H 0.038 0.962 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.084 0.916 43 H 0.018 0.982 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.064 0.936 47 H -0.002 1.002 48 H 0.006 0.994 49 H 0.022 0.978 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.828 0.256 5.984 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.125 4.125 3 N -0.116 5.116 4 O 0.023 5.977 5 C -0.083 4.083 6 C -0.131 4.131 7 C -0.201 4.201 8 C -0.041 4.041 9 H 0.165 0.835 10 C -0.201 4.201 11 C 0.299 3.701 12 O -0.458 6.458 13 N -0.358 5.358 14 C 0.008 3.992 15 C -0.023 4.023 16 O -0.311 6.311 17 C -0.027 4.027 18 C 0.019 3.981 19 N -0.336 5.336 20 C 0.051 3.949 21 C -0.387 4.387 22 H 0.092 0.908 23 C -0.252 4.252 24 N -0.583 5.583 25 Si 0.793 3.207 26 H -0.187 1.187 27 H -0.223 1.223 28 H -0.224 1.224 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.135 0.865 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.254 0.746 39 H 0.057 0.943 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.037 0.963 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.017 0.983 48 H 0.025 0.975 49 H 0.040 0.960 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 24.286 2.422 5.496 25.018 hybrid contribution -1.611 -0.850 -0.875 2.020 sum 22.675 1.572 4.621 23.195 Atomic orbital electron populations 1.20202 0.86346 1.03406 1.03289 1.23559 0.99168 0.89061 1.00714 1.73797 0.89975 1.24879 1.22900 1.84730 1.21077 1.23718 1.68222 1.25017 0.99378 0.83219 1.00731 1.20651 0.87924 0.99135 1.05402 1.20548 0.91889 0.96415 1.11229 1.19587 1.00666 0.90495 0.93303 0.83479 1.21849 0.99579 1.03166 0.95469 1.20983 0.79802 0.81881 0.87430 1.90714 1.59869 1.46748 1.48451 1.45773 1.52890 1.11260 1.25892 1.21205 0.94356 0.94875 0.88806 1.22691 0.94232 0.94935 0.90412 1.87964 1.66673 1.29098 1.47339 1.23248 0.97062 0.82470 0.99919 1.21155 0.85828 0.95853 0.95301 1.44111 1.10901 1.10090 1.68537 1.20305 0.95821 0.84769 0.94011 1.19602 0.99264 0.92077 1.27767 0.90769 1.25793 1.02929 0.96599 0.99926 1.70289 1.34371 1.06165 1.47515 0.85245 0.80238 0.78355 0.76867 1.18664 1.22255 1.22391 0.89019 0.91556 0.90855 0.88326 0.88061 0.86458 0.89633 0.89352 0.93631 0.74648 0.94307 0.89424 0.93195 0.89826 0.96345 0.90987 0.91043 0.91776 0.98317 0.97547 0.95972 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.08 8.93 71.23 0.64 -1.45 16 2 C 0.03 0.94 6.69 43.57 0.29 1.23 16 3 N -0.41 -12.23 12.07 -49.55 -0.60 -12.83 16 4 O 0.08 2.12 11.20 71.73 0.80 2.93 16 5 C -0.02 -0.37 7.49 25.04 0.19 -0.18 16 6 C -0.07 -0.51 10.17 71.24 0.72 0.21 16 7 C -0.20 -4.34 4.47 -19.74 -0.09 -4.43 16 8 C -0.02 -0.32 3.02 -12.29 -0.04 -0.36 16 9 H 0.15 1.22 7.13 -2.39 -0.02 1.21 16 10 C -0.14 -2.14 9.00 71.98 0.65 -1.49 16 11 C 0.51 12.54 6.43 87.66 0.56 13.10 16 12 O -0.58 -19.73 13.97 -3.04 -0.04 -19.78 16 13 N -0.71 -15.32 5.40 -463.04 -2.50 -17.82 16 14 C 0.13 3.50 6.06 86.38 0.52 4.02 16 15 C 0.05 1.39 6.07 71.99 0.44 1.83 16 16 O -0.39 -13.15 9.84 -148.98 -1.47 -14.62 16 17 C 0.05 1.69 6.28 71.98 0.45 2.15 16 18 C 0.14 5.32 6.11 86.38 0.53 5.85 16 19 N -0.61 -30.20 2.89 -726.94 -2.10 -32.30 16 20 C 0.20 9.99 8.61 127.77 1.10 11.09 16 21 C -0.26 -13.87 9.67 84.03 0.81 -13.06 16 22 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16 23 C -0.06 -3.26 5.12 84.86 0.43 -2.83 16 24 N -0.94 -56.74 10.62 21.65 0.23 -56.51 16 25 Si 0.96 45.41 29.57 68.60 2.03 47.44 16 26 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 29 H 0.09 2.15 8.12 -2.39 -0.02 2.13 16 30 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.07 2.27 5.79 -2.39 -0.01 2.25 16 32 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.12 0.21 7.39 -2.39 -0.02 0.19 16 35 H 0.08 1.05 7.56 -2.39 -0.02 1.03 16 36 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.04 0.90 6.75 -2.39 -0.02 0.88 16 38 H 0.42 6.70 7.89 -92.71 -0.73 5.96 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.07 2.42 8.03 -2.38 -0.02 2.40 16 46 H 0.06 2.10 7.87 -2.39 -0.02 2.08 16 47 H 0.00 -0.09 7.43 -2.39 -0.02 -0.10 16 48 H 0.01 0.32 7.20 -2.38 -0.02 0.31 16 49 H 0.02 0.96 7.85 -2.39 -0.02 0.95 16 50 H 0.24 14.44 8.31 -92.70 -0.77 13.67 16 Total: -1.00 -79.95 407.57 3.78 -76.18 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 0.21 Total: 11.63 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 7.21 Total: 15.69 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -4.97 Total: -119.47 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.71 Total: -31.47 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -79.95 3.78 -76.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506977243.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.616 kcal (2) G-P(sol) polarization free energy of solvation -79.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds