Wall clock time and date at job start Sat Apr 11 2020 05:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.47096 * 119.99919 * 2 1 4 4 O 1.21623 * 119.99892 * 237.86624 * 3 2 1 5 5 N 1.34771 * 120.00512 * 57.86358 * 3 2 1 6 6 C 1.46505 * 119.99861 * 4.74540 * 5 3 2 7 7 C 1.46501 * 120.00355 * 184.74722 * 5 3 2 8 8 C 1.53005 * 109.47075 * 269.99831 * 7 5 3 9 9 H 1.09005 * 109.46795 * 59.99825 * 8 7 5 10 10 O 1.42893 * 109.47065 * 300.00340 * 8 7 5 11 11 C 1.53000 * 109.47364 * 179.97438 * 8 7 5 12 12 N 1.46897 * 109.46892 * 185.00233 * 11 8 7 13 13 C 1.46903 * 110.99739 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47340 * 179.97438 * 13 12 11 15 15 O 1.21295 * 119.99605 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99926 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99419 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00485 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99611 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00241 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00084 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46737 * 60.00024 * 21 19 17 23 23 H 1.48494 * 109.47198 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47090 * 300.00325 * 21 19 17 25 25 C 1.32990 * 120.00187 * 179.97438 * 2 1 3 26 26 C 1.51401 * 136.31898 * 179.62847 * 25 2 1 27 27 C 1.53379 * 87.52210 * 206.05957 * 26 25 2 28 28 C 1.51408 * 136.31497 * 0.02562 * 25 2 1 29 29 H 1.09001 * 109.46975 * 87.76934 * 1 2 3 30 30 H 1.08999 * 109.47185 * 207.76792 * 1 2 3 31 31 H 1.08995 * 109.47509 * 327.76911 * 1 2 3 32 32 H 1.08998 * 109.46982 * 264.89136 * 6 5 3 33 33 H 1.08997 * 109.46869 * 24.89100 * 6 5 3 34 34 H 1.09000 * 109.46940 * 144.88992 * 6 5 3 35 35 H 1.08998 * 109.47290 * 150.00449 * 7 5 3 36 36 H 1.09004 * 109.47293 * 29.99607 * 7 5 3 37 37 H 0.96705 * 113.99860 * 299.99438 * 10 8 7 38 38 H 1.09007 * 109.46726 * 65.00245 * 11 8 7 39 39 H 1.08997 * 109.46959 * 305.00358 * 11 8 7 40 40 H 1.00892 * 111.00473 * 56.05406 * 12 11 8 41 41 H 1.08999 * 109.46975 * 299.99947 * 13 12 11 42 42 H 1.08997 * 109.47424 * 59.99839 * 13 12 11 43 43 H 0.96999 * 119.99992 * 0.02562 * 16 14 13 44 44 H 0.96995 * 120.00597 * 180.02562 * 20 19 17 45 45 H 1.09007 * 113.56243 * 320.64657 * 26 25 2 46 46 H 1.09006 * 113.55928 * 91.37362 * 26 25 2 47 47 H 1.08999 * 113.97061 * 220.28892 * 27 26 25 48 48 H 1.09001 * 113.59122 * 88.79418 * 27 26 25 49 49 H 1.09002 * 113.56304 * 268.62229 * 28 25 2 50 50 H 1.09000 * 113.56156 * 39.35981 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2739 0.0000 4 8 3.0317 1.5204 -0.8919 5 7 2.0418 2.1680 0.9883 6 6 1.1709 1.8294 2.1167 7 6 2.6944 3.4785 0.9342 8 6 4.0550 3.3997 1.6296 9 1 4.6788 2.6620 1.1248 10 8 3.8713 3.0149 2.9934 11 6 4.7369 4.7682 1.5727 12 7 6.0909 4.6642 2.1329 13 6 6.7773 5.9624 2.0951 14 6 8.1597 5.8169 2.6772 15 8 8.5359 4.7379 3.0839 16 7 8.9779 6.8857 2.7458 17 6 10.2354 6.7533 3.2758 18 1 10.5704 5.7926 3.6380 19 6 11.0788 7.8553 3.3470 20 7 10.6710 9.0244 2.9068 21 14 12.7924 7.6749 4.0685 22 1 13.5623 6.6846 3.2737 23 1 13.4864 8.9871 4.0298 24 1 12.6908 7.2094 5.4749 25 6 2.1720 -1.1517 0.0005 26 6 3.6250 -1.5771 -0.0061 27 6 3.1708 -2.8821 -0.6719 28 6 1.8138 -2.6228 0.0007 29 1 -0.3633 0.0400 -1.0269 30 1 -0.3633 -0.9093 0.4788 31 1 -0.3634 0.8692 0.5480 32 1 0.1664 2.2073 1.9266 33 1 1.1352 0.7465 2.2358 34 1 1.5633 2.2823 3.0272 35 1 2.0706 4.2161 1.4391 36 1 2.8345 3.7720 -0.1062 37 1 3.3247 3.6272 3.5047 38 1 4.1579 5.4870 2.1525 39 1 4.7969 5.1013 0.5366 40 1 6.6275 3.9572 1.6531 41 1 6.8515 6.3043 1.0628 42 1 6.2124 6.6893 2.6788 43 1 8.6769 7.7486 2.4208 44 1 11.2599 9.7936 2.9561 45 1 4.2567 -0.9604 -0.6455 46 1 4.0420 -1.7188 0.9910 47 1 3.6835 -3.7698 -0.3017 48 1 3.1399 -2.8288 -1.7602 49 1 1.7337 -3.0517 0.9996 50 1 0.9604 -2.8636 -0.6332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507480987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:53 Heat of formation + Delta-G solvation = -77.695307 kcal Electronic energy + Delta-G solvation = -29146.736479 eV Core-core repulsion = 24982.290667 eV Total energy + Delta-G solvation = -4164.445812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.51835 -38.93061 -38.31890 -37.61715 -35.52436 -34.70379 -33.74418 -33.43543 -31.21095 -30.50652 -27.72239 -27.29524 -26.40379 -25.86341 -25.08910 -23.60040 -22.54114 -21.79041 -20.27897 -19.20962 -18.09972 -17.86244 -17.13810 -16.68692 -16.42537 -16.08832 -15.84980 -15.73445 -15.29172 -15.05439 -14.73769 -14.43173 -14.30685 -14.07589 -13.67600 -13.65584 -13.31814 -13.07043 -13.00528 -12.80647 -12.77867 -12.49543 -12.42917 -12.30336 -11.93567 -11.92741 -11.78582 -11.50595 -11.46273 -11.29385 -11.14100 -10.98833 -10.79547 -10.41819 -10.36549 -10.18211 -9.91726 -9.46789 -9.11673 -8.80597 -8.40060 -8.00509 -7.92144 -6.38549 -3.79249 1.29040 2.47424 2.80860 3.22806 3.27876 3.32764 3.90308 3.94663 4.06275 4.13157 4.25436 4.36313 4.42347 4.52584 4.72403 4.76156 4.84299 4.91614 4.95367 5.01348 5.12717 5.15734 5.19979 5.23287 5.26920 5.28666 5.31728 5.39075 5.42132 5.45661 5.46736 5.56365 5.59462 5.67265 5.82425 5.84309 5.90360 5.98545 5.99849 6.21038 6.29728 6.38932 7.08300 7.22576 7.58122 7.60186 7.74123 7.92578 8.09602 8.65017 9.21182 9.57715 10.09746 10.79213 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.001808 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.527860 B =15484.680683 C =16327.794321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.155 4.155 3 C 0.563 3.437 4 O -0.536 6.536 5 N -0.603 5.603 6 C 0.081 3.919 7 C 0.085 3.915 8 C 0.098 3.902 9 H 0.101 0.899 10 O -0.540 6.540 11 C 0.030 3.970 12 N -0.659 5.659 13 C 0.050 3.950 14 C 0.441 3.559 15 O -0.581 6.581 16 N -0.565 5.565 17 C -0.299 4.299 18 H 0.102 0.898 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.093 4.093 26 C -0.113 4.113 27 C -0.137 4.137 28 C -0.101 4.101 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.367 0.633 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.350 0.650 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.098 0.902 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.125 -16.186 -5.636 31.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.158 4.158 3 C 0.351 3.649 4 O -0.413 6.413 5 N -0.335 5.335 6 C -0.061 4.061 7 C -0.039 4.039 8 C 0.037 3.963 9 H 0.119 0.881 10 O -0.344 6.344 11 C -0.101 4.101 12 N -0.291 5.291 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.465 6.465 16 N -0.202 5.202 17 C -0.428 4.428 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.095 4.095 26 C -0.150 4.150 27 C -0.174 4.174 28 C -0.138 4.138 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.213 0.787 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.170 0.830 41 H 0.060 0.940 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.115 0.885 47 H 0.096 0.904 48 H 0.103 0.897 49 H 0.116 0.884 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.175 -17.013 -5.371 30.856 hybrid contribution 0.501 1.318 -0.646 1.551 sum -24.674 -15.695 -6.017 29.855 Atomic orbital electron populations 1.20717 0.89789 1.02991 1.02627 1.20258 0.96064 0.91145 1.08358 1.18407 0.81470 0.83653 0.81328 1.90814 1.35849 1.77617 1.37053 1.47591 1.48045 1.15357 1.22545 1.21893 0.93106 1.02089 0.89057 1.22186 0.94373 0.84107 1.03206 1.22289 0.94365 0.96405 0.83256 0.88149 1.86687 1.74525 1.51953 1.21263 1.22606 0.92254 0.97187 0.98049 1.59982 1.01813 1.07097 1.60247 1.21687 0.95121 0.92075 0.99343 1.19807 0.86518 0.85531 0.85498 1.90534 1.76307 1.26976 1.52655 1.41853 1.13650 1.09865 1.54784 1.19662 0.89358 0.97255 1.36573 0.87984 1.25263 1.00283 0.94734 0.97724 1.69604 1.37775 1.00084 1.46988 0.85907 0.81456 0.77226 0.79566 1.19933 1.21002 1.19886 1.23101 0.97927 0.93698 0.94741 1.22239 0.93941 0.96848 1.01951 1.22642 0.96522 0.97831 1.00444 1.22228 0.98480 0.91469 1.01651 0.91303 0.91151 0.91165 0.92790 0.90699 0.90402 0.89919 0.88994 0.78699 0.90723 0.94588 0.83013 0.93978 0.89696 0.77484 0.91864 0.90006 0.88486 0.90360 0.89690 0.88361 0.90627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.64 9.42 36.00 0.34 -0.30 16 2 C -0.16 -1.46 4.37 -102.85 -0.45 -1.90 16 3 C 0.56 6.71 7.01 -12.67 -0.09 6.63 16 4 O -0.54 -8.47 16.71 5.26 0.09 -8.38 16 5 N -0.60 -5.72 2.80 -182.97 -0.51 -6.24 16 6 C 0.08 0.51 8.82 59.85 0.53 1.04 16 7 C 0.08 0.78 5.09 -4.04 -0.02 0.76 16 8 C 0.10 1.14 3.41 -26.73 -0.09 1.05 16 9 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 10 O -0.54 -6.51 11.93 -35.23 -0.42 -6.93 16 11 C 0.03 0.37 5.32 -3.83 -0.02 0.35 16 12 N -0.66 -11.26 6.07 -115.06 -0.70 -11.96 16 13 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 14 C 0.44 10.81 7.82 -10.99 -0.09 10.73 16 15 O -0.58 -16.46 15.78 5.54 0.09 -16.37 16 16 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 17 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 18 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.95 13.05 55.50 0.72 -24.22 16 21 Si 0.93 21.47 29.55 -169.99 -5.02 16.44 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 25 C -0.09 -0.84 6.63 -100.48 -0.67 -1.51 16 26 C -0.11 -1.06 7.83 -27.56 -0.22 -1.27 16 27 C -0.14 -0.95 8.17 -26.20 -0.21 -1.17 16 28 C -0.10 -0.63 7.67 -27.41 -0.21 -0.84 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.33 7.85 -51.93 -0.41 -0.08 16 31 H 0.07 0.36 5.88 -51.93 -0.31 0.06 16 32 H 0.05 0.24 7.33 -51.93 -0.38 -0.14 16 33 H 0.07 0.47 6.48 -51.93 -0.34 0.13 16 34 H 0.08 0.45 6.81 -51.93 -0.35 0.10 16 35 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 36 H 0.09 0.95 7.49 -51.93 -0.39 0.56 16 37 H 0.37 3.05 8.81 45.56 0.40 3.45 16 38 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.35 6.46 8.43 -39.30 -0.33 6.13 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 44 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 413.63 15.07 6.23 6.23 Total: -1.00 -36.16 413.63 -8.47 -44.63 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -7.43 Total: 15.31 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -1.47 Total: 6.25 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.54 Total: -57.19 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.24 Total: -31.68 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.16 -8.47 -44.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507480987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.061 kcal (2) G-P(sol) polarization free energy of solvation -36.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds