Wall clock time and date at job start Sat Apr 11 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.47096 * 119.99919 * 2 1 4 4 O 1.21623 * 119.99892 * 237.86624 * 3 2 1 5 5 N 1.34771 * 120.00512 * 57.86358 * 3 2 1 6 6 C 1.46505 * 119.99861 * 4.74540 * 5 3 2 7 7 C 1.46501 * 120.00355 * 184.74722 * 5 3 2 8 8 C 1.53005 * 109.47075 * 269.99831 * 7 5 3 9 9 H 1.09005 * 109.46795 * 59.99825 * 8 7 5 10 10 O 1.42893 * 109.47065 * 300.00340 * 8 7 5 11 11 C 1.53000 * 109.47364 * 179.97438 * 8 7 5 12 12 N 1.46897 * 109.46892 * 185.00233 * 11 8 7 13 13 C 1.46903 * 110.99739 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47340 * 179.97438 * 13 12 11 15 15 O 1.21295 * 119.99605 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99926 * 179.97438 * 14 13 12 17 17 C 1.37102 * 119.99419 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00485 * 0.02562 * 17 16 14 19 19 C 1.38954 * 119.99611 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00241 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00084 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46737 * 60.00024 * 21 19 17 23 23 H 1.48494 * 109.47198 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47090 * 300.00325 * 21 19 17 25 25 C 1.32990 * 120.00187 * 179.97438 * 2 1 3 26 26 C 1.51401 * 136.31898 * 179.62847 * 25 2 1 27 27 C 1.53379 * 87.52210 * 206.05957 * 26 25 2 28 28 C 1.51408 * 136.31497 * 0.02562 * 25 2 1 29 29 H 1.09001 * 109.46975 * 87.76934 * 1 2 3 30 30 H 1.08999 * 109.47185 * 207.76792 * 1 2 3 31 31 H 1.08995 * 109.47509 * 327.76911 * 1 2 3 32 32 H 1.08998 * 109.46982 * 264.89136 * 6 5 3 33 33 H 1.08997 * 109.46869 * 24.89100 * 6 5 3 34 34 H 1.09000 * 109.46940 * 144.88992 * 6 5 3 35 35 H 1.08998 * 109.47290 * 150.00449 * 7 5 3 36 36 H 1.09004 * 109.47293 * 29.99607 * 7 5 3 37 37 H 0.96705 * 113.99860 * 299.99438 * 10 8 7 38 38 H 1.09007 * 109.46726 * 65.00245 * 11 8 7 39 39 H 1.08997 * 109.46959 * 305.00358 * 11 8 7 40 40 H 1.00892 * 111.00473 * 56.05406 * 12 11 8 41 41 H 1.08999 * 109.46975 * 299.99947 * 13 12 11 42 42 H 1.08997 * 109.47424 * 59.99839 * 13 12 11 43 43 H 0.96999 * 119.99992 * 0.02562 * 16 14 13 44 44 H 0.96995 * 120.00597 * 180.02562 * 20 19 17 45 45 H 1.09007 * 113.56243 * 320.64657 * 26 25 2 46 46 H 1.09006 * 113.55928 * 91.37362 * 26 25 2 47 47 H 1.08999 * 113.97061 * 220.28892 * 27 26 25 48 48 H 1.09001 * 113.59122 * 88.79418 * 27 26 25 49 49 H 1.09002 * 113.56304 * 268.62229 * 28 25 2 50 50 H 1.09000 * 113.56156 * 39.35981 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2739 0.0000 4 8 3.0317 1.5204 -0.8919 5 7 2.0418 2.1680 0.9883 6 6 1.1709 1.8294 2.1167 7 6 2.6944 3.4785 0.9342 8 6 4.0550 3.3997 1.6296 9 1 4.6788 2.6620 1.1248 10 8 3.8713 3.0149 2.9934 11 6 4.7369 4.7682 1.5727 12 7 6.0909 4.6642 2.1329 13 6 6.7773 5.9624 2.0951 14 6 8.1597 5.8169 2.6772 15 8 8.5359 4.7379 3.0839 16 7 8.9779 6.8857 2.7458 17 6 10.2354 6.7533 3.2758 18 1 10.5704 5.7926 3.6380 19 6 11.0788 7.8553 3.3470 20 7 10.6710 9.0244 2.9068 21 14 12.7924 7.6749 4.0685 22 1 13.5623 6.6846 3.2737 23 1 13.4864 8.9871 4.0298 24 1 12.6908 7.2094 5.4749 25 6 2.1720 -1.1517 0.0005 26 6 3.6250 -1.5771 -0.0061 27 6 3.1708 -2.8821 -0.6719 28 6 1.8138 -2.6228 0.0007 29 1 -0.3633 0.0400 -1.0269 30 1 -0.3633 -0.9093 0.4788 31 1 -0.3634 0.8692 0.5480 32 1 0.1664 2.2073 1.9266 33 1 1.1352 0.7465 2.2358 34 1 1.5633 2.2823 3.0272 35 1 2.0706 4.2161 1.4391 36 1 2.8345 3.7720 -0.1062 37 1 3.3247 3.6272 3.5047 38 1 4.1579 5.4870 2.1525 39 1 4.7969 5.1013 0.5366 40 1 6.6275 3.9572 1.6531 41 1 6.8515 6.3043 1.0628 42 1 6.2124 6.6893 2.6788 43 1 8.6769 7.7486 2.4208 44 1 11.2599 9.7936 2.9561 45 1 4.2567 -0.9604 -0.6455 46 1 4.0420 -1.7188 0.9910 47 1 3.6835 -3.7698 -0.3017 48 1 3.1399 -2.8288 -1.7602 49 1 1.7337 -3.0517 0.9996 50 1 0.9604 -2.8636 -0.6332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507480987.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:52 Heat of formation + Delta-G solvation = -106.696301 kcal Electronic energy + Delta-G solvation = -29147.994057 eV Core-core repulsion = 24982.290667 eV Total energy + Delta-G solvation = -4165.703390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32498 -40.21498 -39.56853 -38.69156 -36.56125 -36.08960 -35.58065 -34.07759 -33.29401 -31.51300 -28.92728 -27.95594 -27.25012 -26.60726 -26.43121 -24.99243 -23.34940 -22.73239 -21.14441 -20.97078 -19.93630 -18.83478 -18.22989 -17.67013 -17.25334 -17.24338 -17.14448 -16.62656 -16.37773 -16.21699 -16.12541 -15.90750 -15.54207 -15.18159 -14.90796 -14.67383 -14.39720 -14.18028 -13.96990 -13.69741 -13.47570 -13.39783 -13.29651 -13.22662 -13.11071 -12.98530 -12.93136 -12.75213 -12.58903 -12.46695 -12.45577 -12.13432 -12.09337 -11.91415 -11.52861 -11.46738 -11.27833 -10.75178 -10.38219 -10.04145 -9.78437 -9.57204 -9.34401 -8.48475 -5.97619 0.58874 1.38500 1.40175 1.51482 1.65002 2.02488 2.06961 2.27999 2.85906 3.18177 3.27676 3.40459 3.52137 3.60120 3.74317 3.79166 3.90358 4.07353 4.11770 4.19399 4.28968 4.31660 4.39623 4.42834 4.46872 4.52004 4.62203 4.67962 4.69216 4.71802 4.73995 4.75332 4.82478 4.93308 4.98502 4.99654 5.02204 5.05945 5.30915 5.32780 5.38522 5.48890 5.74690 5.84897 6.07035 6.25589 6.32755 6.58052 6.94306 7.08363 7.10247 7.53294 8.09322 8.68618 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.001808 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.527860 B =15484.680683 C =16327.794321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.165 4.165 3 C 0.550 3.450 4 O -0.590 6.590 5 N -0.600 5.600 6 C 0.075 3.925 7 C 0.090 3.910 8 C 0.109 3.891 9 H 0.060 0.940 10 O -0.558 6.558 11 C 0.033 3.967 12 N -0.676 5.676 13 C 0.066 3.934 14 C 0.435 3.565 15 O -0.626 6.626 16 N -0.572 5.572 17 C -0.337 4.337 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.919 5.919 21 Si 0.994 3.006 22 H -0.273 1.273 23 H -0.268 1.268 24 H -0.272 1.272 25 C -0.109 4.109 26 C -0.128 4.128 27 C -0.132 4.132 28 C -0.084 4.084 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.385 0.615 38 H 0.103 0.897 39 H 0.046 0.954 40 H 0.337 0.663 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.046 0.954 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.117 0.883 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.544 -15.981 -4.824 33.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.168 4.168 3 C 0.340 3.660 4 O -0.472 6.472 5 N -0.330 5.330 6 C -0.066 4.066 7 C -0.034 4.034 8 C 0.048 3.952 9 H 0.078 0.922 10 O -0.364 6.364 11 C -0.096 4.096 12 N -0.308 5.308 13 C -0.067 4.067 14 C 0.222 3.778 15 O -0.512 6.512 16 N -0.209 5.209 17 C -0.466 4.466 18 H 0.095 0.905 19 C -0.213 4.213 20 N -0.560 5.560 21 Si 0.818 3.182 22 H -0.198 1.198 23 H -0.192 1.192 24 H -0.197 1.197 25 C -0.110 4.110 26 C -0.165 4.165 27 C -0.169 4.169 28 C -0.121 4.121 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.141 0.859 36 H 0.096 0.904 37 H 0.234 0.766 38 H 0.121 0.879 39 H 0.064 0.936 40 H 0.154 0.846 41 H 0.082 0.918 42 H 0.128 0.872 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.115 0.885 47 H 0.112 0.888 48 H 0.099 0.901 49 H 0.135 0.865 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.660 -16.768 -4.532 32.661 hybrid contribution 1.257 1.268 -0.868 1.985 sum -26.402 -15.500 -5.401 31.089 Atomic orbital electron populations 1.20763 0.87122 1.04591 1.03052 1.20478 0.97748 0.89893 1.08660 1.19020 0.81044 0.84786 0.81138 1.90779 1.38266 1.78854 1.39287 1.47736 1.47651 1.14962 1.22653 1.22140 0.93843 1.02562 0.88058 1.22160 0.93675 0.85026 1.02547 1.22038 0.95123 0.94821 0.83229 0.92226 1.86651 1.75248 1.53008 1.21531 1.22713 0.89854 0.98186 0.98861 1.60020 1.03460 1.06075 1.61218 1.21561 0.91410 0.93370 1.00325 1.20925 0.88416 0.84303 0.84120 1.90500 1.77778 1.28591 1.54348 1.41914 1.13376 1.10555 1.55042 1.19631 0.91233 0.96928 1.38854 0.90503 1.26061 1.03665 0.94117 0.97420 1.69660 1.39062 1.00489 1.46748 0.84974 0.76819 0.77806 0.78636 1.19827 1.19241 1.19675 1.23450 0.97591 0.95375 0.94578 1.22338 0.94260 0.98257 1.01637 1.22642 0.97230 0.96830 1.00194 1.22216 0.98285 0.88786 1.02781 0.91327 0.89114 0.90007 0.89999 0.90571 0.89577 0.85940 0.90351 0.76596 0.87911 0.93621 0.84566 0.91796 0.87154 0.76878 0.91211 0.93512 0.88479 0.88770 0.90074 0.86501 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.42 71.24 0.67 -0.33 16 2 C -0.16 -3.03 4.37 -18.71 -0.08 -3.11 16 3 C 0.55 13.51 7.01 86.57 0.61 14.11 16 4 O -0.59 -20.08 16.71 -4.10 -0.07 -20.15 16 5 N -0.60 -10.89 2.80 -851.04 -2.38 -13.27 16 6 C 0.08 0.77 8.82 127.77 1.13 1.90 16 7 C 0.09 1.55 5.09 86.38 0.44 1.99 16 8 C 0.11 2.52 3.41 30.60 0.10 2.62 16 9 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 10 O -0.56 -12.92 11.93 -148.98 -1.78 -14.69 16 11 C 0.03 0.78 5.32 86.30 0.46 1.23 16 12 N -0.68 -22.94 6.07 -517.93 -3.15 -26.08 16 13 C 0.07 2.34 6.17 85.56 0.53 2.86 16 14 C 0.43 21.67 7.82 87.66 0.69 22.36 16 15 O -0.63 -36.70 15.78 -3.08 -0.05 -36.75 16 16 N -0.57 -30.27 5.29 -306.98 -1.62 -31.90 16 17 C -0.34 -19.71 9.68 84.04 0.81 -18.90 16 18 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 19 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 20 N -0.92 -50.27 13.05 21.66 0.28 -49.99 16 21 Si 0.99 43.83 29.55 68.60 2.03 45.86 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C -0.11 -1.95 6.63 -17.17 -0.11 -2.06 16 26 C -0.13 -2.58 7.83 30.06 0.24 -2.34 16 27 C -0.13 -1.77 8.17 30.94 0.25 -1.52 16 28 C -0.08 -0.89 7.67 30.15 0.23 -0.66 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.55 7.85 -2.39 -0.02 0.54 16 31 H 0.08 0.61 5.88 -2.39 -0.01 0.60 16 32 H 0.08 0.42 7.33 -2.39 -0.02 0.40 16 33 H 0.08 0.79 6.48 -2.39 -0.02 0.77 16 34 H 0.09 0.76 6.81 -2.39 -0.02 0.75 16 35 H 0.12 1.15 8.07 -2.39 -0.02 1.13 16 36 H 0.08 1.61 7.49 -2.38 -0.02 1.60 16 37 H 0.38 5.48 8.81 -74.05 -0.65 4.83 16 38 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.34 12.89 8.43 -89.70 -0.76 12.13 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 44 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 45 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 47 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -82.84 413.63 -1.47 -84.31 By element: Atomic # 1 Polarization: 45.89 SS G_CDS: -1.16 Total: 44.72 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 6.43 Total: 17.94 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -6.86 Total: -121.24 kcal Atomic # 8 Polarization: -69.70 SS G_CDS: -1.89 Total: -71.59 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -82.84 -1.47 -84.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507480987.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.388 kcal (2) G-P(sol) polarization free energy of solvation -82.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds