Wall clock time and date at job start Sat Apr 11 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34327 * 126.44504 * 2 1 4 4 N 1.34477 * 107.67049 * 179.73684 * 3 2 1 5 5 C 1.30259 * 108.70224 * 0.26007 * 4 3 2 6 6 C 1.50695 * 125.62256 * 179.97438 * 5 4 3 7 7 O 1.42894 * 109.47202 * 90.02845 * 6 5 4 8 8 C 1.42904 * 114.00129 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46963 * 179.97438 * 8 7 6 10 10 O 1.21275 * 120.00348 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99686 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00073 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47172 * 90.00247 * 12 11 9 14 14 N 1.46497 * 109.47502 * 180.02562 * 13 12 11 15 15 C 1.46501 * 120.00062 * 270.00321 * 14 13 12 16 16 C 1.36939 * 120.00150 * 89.99892 * 14 13 12 17 17 H 1.07997 * 119.99881 * 22.32301 * 16 14 13 18 18 C 1.38807 * 120.00210 * 202.32888 * 16 14 13 19 19 N 1.31627 * 119.99915 * 11.33599 * 18 16 14 20 20 Si 1.86801 * 120.00377 * 191.33645 * 18 16 14 21 21 H 1.48506 * 109.46868 * 59.99484 * 20 18 16 22 22 H 1.48493 * 109.47430 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46985 * 300.00192 * 20 18 16 24 24 C 1.46500 * 120.00359 * 0.02562 * 11 9 8 25 25 C 1.53005 * 109.47088 * 119.99404 * 24 11 9 26 26 C 1.52997 * 109.47585 * 239.99797 * 24 11 9 27 27 O 1.33974 * 108.75710 * 0.02562 * 5 4 3 28 28 H 1.09006 * 109.46963 * 90.00098 * 1 2 3 29 29 H 1.08996 * 109.47240 * 210.00092 * 1 2 3 30 30 H 1.09001 * 109.46799 * 330.00081 * 1 2 3 31 31 H 1.08002 * 126.16796 * 359.97438 * 3 2 1 32 32 H 1.09005 * 109.47241 * 210.02480 * 6 5 4 33 33 H 1.09001 * 109.46956 * 330.02434 * 6 5 4 34 34 H 1.08994 * 109.46913 * 300.00139 * 8 7 6 35 35 H 1.09002 * 109.46882 * 60.00048 * 8 7 6 36 36 H 1.09002 * 109.47313 * 210.00317 * 12 11 9 37 37 H 1.08997 * 109.47188 * 330.00498 * 12 11 9 38 38 H 1.09002 * 109.47059 * 300.00226 * 13 12 11 39 39 H 1.09005 * 109.47035 * 60.00307 * 13 12 11 40 40 H 1.08996 * 109.47412 * 94.23561 * 15 14 13 41 41 H 1.09001 * 109.47064 * 214.23417 * 15 14 13 42 42 H 1.09001 * 109.47218 * 334.23156 * 15 14 13 43 43 H 0.97004 * 119.99947 * 180.02562 * 19 18 16 44 44 H 1.09011 * 109.46788 * 0.02562 * 24 11 9 45 45 H 1.09002 * 109.46936 * 60.00857 * 25 24 11 46 46 H 1.09000 * 109.46781 * 180.02562 * 25 24 11 47 47 H 1.08996 * 109.47322 * 300.00303 * 25 24 11 48 48 H 1.09003 * 109.46967 * 59.99999 * 26 24 11 49 49 H 1.09000 * 109.47401 * 179.97438 * 26 24 11 50 50 H 1.08998 * 109.46924 * 299.99920 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0059 5 6 3.5765 -0.6548 0.0038 6 6 4.8004 -1.5341 0.0082 7 8 5.1805 -1.8147 1.3568 8 6 6.3372 -2.6456 1.4738 9 6 6.6458 -2.8747 2.9310 10 8 5.9441 -2.3760 3.7852 11 7 7.7011 -3.6347 3.2849 12 6 8.0008 -3.8579 4.7014 13 6 7.2637 -5.1072 5.1880 14 7 7.5629 -5.3301 6.6046 15 6 8.7100 -6.1559 6.9899 16 6 6.7704 -4.7665 7.5688 17 1 5.7576 -4.4753 7.3329 18 6 7.2689 -4.5696 8.8492 19 7 8.5563 -4.7122 9.0834 20 14 6.1128 -4.1021 10.2400 21 1 5.0906 -5.1654 10.4125 22 1 6.8872 -3.9517 11.4981 23 1 5.4412 -2.8181 9.9150 24 6 8.5485 -4.2376 2.2531 25 6 9.9835 -3.7310 2.4115 26 6 8.5260 -5.7603 2.4002 27 8 2.3074 -1.0840 -0.0040 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9822 2.1112 -0.0004 32 1 4.5788 -2.4679 -0.5085 33 1 5.6173 -1.0223 -0.5006 34 1 6.1479 -3.6024 0.9873 35 1 7.1859 -2.1564 0.9956 36 1 9.0745 -3.9971 4.8281 37 1 7.6754 -2.9948 5.2821 38 1 6.1901 -4.9680 5.0613 39 1 7.5892 -5.9704 4.6073 40 1 9.5758 -5.5169 7.1635 41 1 8.4736 -6.7031 7.9025 42 1 8.9341 -6.8622 6.1905 43 1 8.9046 -4.5749 9.9783 44 1 8.1729 -3.9617 1.2676 45 1 10.3594 -4.0065 3.3969 46 1 10.6139 -4.1793 1.6435 47 1 9.9996 -2.6462 2.3067 48 1 7.5037 -6.1212 2.2873 49 1 9.1562 -6.2089 1.6322 50 1 8.9019 -6.0357 3.3856 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507814855.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:10 Heat of formation + Delta-G solvation = -20.229557 kcal Electronic energy + Delta-G solvation = -29856.865042 eV Core-core repulsion = 25694.911131 eV Total energy + Delta-G solvation = -4161.953911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.58072 -39.99818 -38.04668 -36.53005 -35.37902 -34.98269 -33.05870 -31.97329 -31.11306 -30.13397 -28.76815 -27.35151 -26.77785 -25.78528 -25.36778 -23.25279 -22.58469 -21.86167 -21.35627 -20.46533 -18.77343 -17.92344 -17.32379 -16.99435 -16.69181 -16.44561 -16.32654 -15.42549 -15.08782 -14.86242 -14.72610 -14.33208 -14.05512 -13.84274 -13.52662 -13.47291 -13.38290 -13.26629 -13.17576 -12.73120 -12.72145 -12.31999 -12.22268 -12.18380 -12.11310 -11.67459 -11.55296 -11.46360 -11.11066 -10.95330 -10.79320 -10.78995 -10.70499 -10.42892 -10.11901 -10.08537 -9.86764 -9.63954 -9.42868 -9.00038 -8.57567 -8.34294 -6.68917 -5.65846 -3.10671 1.04244 2.15345 2.40330 2.84793 2.95321 3.47717 3.50825 3.53879 3.57410 4.02553 4.40115 4.54118 4.59243 4.66086 4.67669 4.71044 4.79158 4.89436 4.95977 5.00449 5.06233 5.12133 5.13351 5.22646 5.50053 5.55118 5.56836 5.58518 5.75734 5.77524 5.78157 5.78426 5.86887 6.00212 6.14220 6.18413 6.31379 6.40854 6.54401 6.74659 6.75422 6.86329 7.11360 7.41670 7.45395 7.69444 7.75430 7.91309 8.45667 8.50182 9.31945 9.93751 10.41222 11.39640 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010461 B = 0.002614 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.919930 B =10710.648536 C =12774.136315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.459 5.459 5 C 0.189 3.811 6 C 0.161 3.839 7 O -0.355 6.355 8 C 0.046 3.954 9 C 0.508 3.492 10 O -0.508 6.508 11 N -0.602 5.602 12 C 0.095 3.905 13 C 0.139 3.861 14 N -0.599 5.599 15 C 0.165 3.835 16 C -0.250 4.250 17 H 0.069 0.931 18 C 0.001 3.999 19 N -0.912 5.912 20 Si 0.905 3.095 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.128 3.872 25 C -0.165 4.165 26 C -0.167 4.167 27 O -0.194 6.194 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.186 0.814 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.028 0.972 41 H 0.045 0.955 42 H -0.005 1.005 43 H 0.252 0.748 44 H 0.082 0.918 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.608 3.841 -25.584 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 C -0.184 4.184 4 N -0.189 5.189 5 C -0.018 4.018 6 C 0.083 3.917 7 O -0.272 6.272 8 C -0.033 4.033 9 C 0.293 3.707 10 O -0.382 6.382 11 N -0.339 5.339 12 C -0.029 4.029 13 C 0.010 3.990 14 N -0.322 5.322 15 C 0.020 3.980 16 C -0.379 4.379 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.558 5.558 20 Si 0.735 3.265 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.024 3.976 25 C -0.223 4.223 26 C -0.225 4.225 27 O -0.080 6.080 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.203 0.797 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.064 0.936 42 H 0.013 0.987 43 H 0.062 0.938 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.449 4.475 -24.744 25.729 hybrid contribution -0.879 -0.041 0.610 1.070 sum -6.328 4.434 -24.135 25.341 Atomic orbital electron populations 1.20313 0.83748 1.04765 1.03799 1.23578 0.95202 0.84532 1.05952 1.23123 0.87599 1.00518 1.07197 1.70410 1.23317 1.09061 1.16134 1.25517 0.83888 0.89924 1.02430 1.20465 0.89059 0.96326 0.85838 1.88111 1.45800 1.69808 1.23506 1.22383 0.88985 0.95464 0.96498 1.20008 0.81391 0.79505 0.89795 1.90793 1.47663 1.48083 1.51638 1.48250 1.27846 1.49601 1.08156 1.22592 1.00491 1.02384 0.77397 1.21315 0.97971 0.93731 0.85934 1.43972 1.32437 1.56112 0.99655 1.20810 0.89855 0.91789 0.95535 1.19232 0.93639 1.35017 0.90060 0.91313 1.25012 0.95625 1.00360 0.98693 1.70054 1.10783 1.54387 1.20554 0.86311 0.79993 0.78637 0.81524 1.21109 1.21680 1.20821 1.21165 0.91452 0.93933 0.91048 1.22184 0.95529 1.01467 1.03158 1.22317 1.02433 0.94452 1.03317 1.84391 1.17710 1.36612 1.69329 0.89698 0.90054 0.88742 0.79715 0.89969 0.88512 0.89983 0.89989 0.91171 0.89779 0.93752 0.93908 0.95415 0.93581 0.98686 0.93801 0.89950 0.91378 0.91564 0.92327 0.92130 0.91781 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.43 36.01 0.38 -0.02 16 2 C -0.04 -0.40 7.39 -35.69 -0.26 -0.67 16 3 C -0.05 -0.50 11.80 -17.77 -0.21 -0.70 16 4 N -0.46 -6.28 11.29 -11.10 -0.13 -6.41 16 5 C 0.19 2.43 7.97 -12.95 -0.10 2.32 16 6 C 0.16 1.61 6.56 36.00 0.24 1.84 16 7 O -0.35 -5.06 9.86 -55.14 -0.54 -5.60 16 8 C 0.05 0.53 4.73 36.01 0.17 0.70 16 9 C 0.51 8.56 7.75 -10.98 -0.09 8.47 16 10 O -0.51 -11.55 16.08 -14.35 -0.23 -11.79 16 11 N -0.60 -9.23 2.40 -166.10 -0.40 -9.63 16 12 C 0.10 1.86 5.15 -4.04 -0.02 1.84 16 13 C 0.14 2.98 5.75 -4.04 -0.02 2.95 16 14 N -0.60 -15.54 2.93 -181.12 -0.53 -16.07 16 15 C 0.16 4.07 9.01 59.85 0.54 4.61 16 16 C -0.25 -7.23 9.67 -15.06 -0.15 -7.38 16 17 H 0.07 2.02 7.84 -52.49 -0.41 1.61 16 18 C 0.00 0.02 5.13 -17.43 -0.09 -0.07 16 19 N -0.91 -27.15 10.58 55.49 0.59 -26.56 16 20 Si 0.91 23.02 29.57 -169.99 -5.03 17.99 16 21 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 24 C 0.13 1.35 3.17 -67.93 -0.22 1.14 16 25 C -0.17 -1.63 9.17 37.16 0.34 -1.29 16 26 C -0.17 -1.71 8.14 37.16 0.30 -1.41 16 27 O -0.19 -2.44 10.78 5.34 0.06 -2.39 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.19 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.68 7.79 -51.93 -0.40 0.27 16 35 H 0.08 0.68 7.79 -51.93 -0.40 0.28 16 36 H 0.07 1.33 6.43 -51.93 -0.33 1.00 16 37 H 0.08 2.01 7.42 -51.93 -0.39 1.63 16 38 H 0.04 1.03 8.03 -51.93 -0.42 0.61 16 39 H 0.04 0.80 5.17 -51.93 -0.27 0.53 16 40 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 41 H 0.05 1.23 7.19 -51.93 -0.37 0.86 16 42 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.08 0.63 5.77 -51.92 -0.30 0.33 16 45 H 0.07 0.80 6.66 -51.93 -0.35 0.45 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.91 6.17 -51.93 -0.32 0.59 16 LS Contribution 407.80 15.07 6.15 6.15 Total: -1.00 -38.29 407.80 -7.37 -45.66 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -8.12 Total: -3.71 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 0.81 Total: 12.35 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.47 Total: -58.66 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.72 Total: -19.77 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.03 Total: 17.99 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.29 -7.37 -45.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507814855.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.432 kcal (2) G-P(sol) polarization free energy of solvation -38.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds