Wall clock time and date at job start Sat Apr 11 2020 05:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35455 * 126.77606 * 2 1 4 4 C 1.41380 * 103.98220 * 180.09843 * 3 2 1 5 5 C 1.50694 * 126.80044 * 179.88894 * 4 3 2 6 6 O 1.42895 * 109.47307 * 359.70706 * 5 4 3 7 7 C 1.42903 * 114.00355 * 180.02562 * 6 5 4 8 8 C 1.50698 * 109.47151 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00103 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99551 * 179.97438 * 8 7 6 11 11 C 1.46507 * 119.99542 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47280 * 324.99739 * 11 10 8 13 13 C 1.53002 * 109.46688 * 204.99971 * 11 10 8 14 14 N 1.46500 * 109.47364 * 54.99883 * 13 11 10 15 15 C 1.36933 * 120.00095 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00223 * 0.02562 * 15 14 13 17 17 C 1.38811 * 120.00362 * 180.02562 * 15 14 13 18 18 N 1.31626 * 119.99525 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00314 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47343 * 59.99970 * 19 17 15 21 21 H 1.48508 * 109.47015 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47318 * 299.99748 * 19 17 15 23 23 C 1.52992 * 109.47485 * 85.00034 * 11 10 8 24 24 C 1.52997 * 109.47482 * 179.97438 * 23 11 10 25 25 C 1.53006 * 109.47223 * 59.99555 * 23 11 10 26 26 C 1.52999 * 109.46961 * 300.00204 * 23 11 10 27 27 N 1.30173 * 106.39555 * 359.62532 * 4 3 2 28 28 O 1.20917 * 111.60681 * 0.24065 * 27 4 3 29 29 H 1.08998 * 109.47248 * 180.30254 * 1 2 3 30 30 H 1.09003 * 109.46806 * 300.30406 * 1 2 3 31 31 H 1.09003 * 109.47312 * 60.30055 * 1 2 3 32 32 H 1.07998 * 128.00795 * 359.96206 * 3 2 1 33 33 H 1.09006 * 109.47250 * 239.70975 * 5 4 3 34 34 H 1.09002 * 109.47261 * 119.71216 * 5 4 3 35 35 H 1.08995 * 109.46919 * 59.99843 * 7 6 5 36 36 H 1.09001 * 109.46753 * 300.00256 * 7 6 5 37 37 H 0.96997 * 120.00436 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.46816 * 175.00210 * 13 11 10 39 39 H 1.09000 * 109.47059 * 294.99866 * 13 11 10 40 40 H 0.96996 * 120.00032 * 0.02562 * 14 13 11 41 41 H 0.97006 * 119.99349 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.47153 * 59.99783 * 24 23 11 43 43 H 1.09001 * 109.46832 * 299.99974 * 24 23 11 44 44 H 1.09004 * 109.47261 * 179.97438 * 24 23 11 45 45 H 1.08993 * 109.46955 * 180.02562 * 25 23 11 46 46 H 1.09000 * 109.47050 * 300.00346 * 25 23 11 47 47 H 1.09001 * 109.47002 * 60.00080 * 25 23 11 48 48 H 1.09002 * 109.46716 * 299.99630 * 26 23 11 49 49 H 1.09000 * 109.47486 * 59.99547 * 26 23 11 50 50 H 1.09001 * 109.47362 * 180.02562 * 26 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5372 -0.0024 5 6 4.9211 1.2999 -0.0057 6 8 4.6500 2.7029 -0.0131 7 6 5.8215 3.5213 -0.0173 8 6 5.4197 4.9737 -0.0244 9 8 4.2457 5.2781 -0.0260 10 7 6.3650 5.9343 -0.0287 11 6 5.9744 7.3463 -0.0361 12 1 5.0665 7.4691 -0.6267 13 6 7.0988 8.1833 -0.6494 14 7 7.4273 7.6611 -1.9782 15 6 8.4108 8.2549 -2.7233 16 1 8.9447 9.1079 -2.3313 17 6 8.7217 7.7604 -3.9826 18 7 8.0707 6.7211 -4.4606 19 14 10.0638 8.5700 -4.9987 20 1 11.3507 8.5057 -4.2603 21 1 10.2012 7.8579 -6.2947 22 1 9.7071 9.9896 -5.2489 23 6 5.7165 7.8117 1.3983 24 6 5.3091 9.2864 1.3907 25 6 6.9909 7.6394 2.2273 26 6 4.5922 6.9747 2.0116 27 7 3.4763 -0.7564 0.0047 28 8 2.3095 -1.0736 0.0061 29 1 -0.3633 -1.0276 0.0054 30 1 -0.3633 0.5186 0.8873 31 1 -0.3634 0.5092 -0.8927 32 1 2.0345 2.1271 -0.0006 33 1 5.4949 1.0361 -0.8941 34 1 5.4941 1.0452 0.8858 35 1 6.4136 3.3034 -0.9061 36 1 6.4136 3.3127 0.8738 37 1 7.3040 5.6909 -0.0270 38 1 6.7739 9.2201 -0.7366 39 1 7.9804 8.1313 -0.0105 40 1 6.9476 6.8952 -2.3305 41 1 8.2883 6.3753 -5.3405 42 1 4.4013 9.4096 0.8000 43 1 6.1105 9.8824 0.9539 44 1 5.1249 9.6178 2.4126 45 1 6.8070 7.9705 3.2493 46 1 7.2815 6.5889 2.2328 47 1 7.7919 8.2357 1.7904 48 1 3.6843 7.0974 1.4210 49 1 4.8828 5.9241 2.0171 50 1 4.4081 7.3065 3.0335 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507963950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:14 Heat of formation + Delta-G solvation = -34.415161 kcal Electronic energy + Delta-G solvation = -30047.958977 eV Core-core repulsion = 25885.389933 eV Total energy + Delta-G solvation = -4162.569044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.98922 -41.34905 -39.38182 -38.20988 -36.18233 -35.28116 -34.60235 -34.28846 -32.98725 -30.31067 -29.15388 -28.62225 -28.12578 -28.02160 -27.14144 -25.49490 -23.97597 -23.09485 -21.83705 -21.19388 -19.85255 -19.13365 -18.79245 -18.53981 -17.91839 -17.63346 -17.45243 -16.84075 -16.61412 -16.25812 -15.88060 -15.43191 -15.27792 -15.07190 -14.83232 -14.66643 -14.52211 -14.22892 -14.15668 -13.99380 -13.64179 -13.55506 -13.24921 -13.03561 -13.01275 -12.92855 -12.87778 -12.70484 -12.50311 -12.35261 -12.20713 -12.18097 -12.01165 -11.74428 -11.61263 -11.42327 -11.27677 -10.93776 -10.71441 -10.67925 -10.28082 -9.87107 -8.97462 -7.92915 -5.21716 0.43727 1.15325 1.48978 1.51072 1.57069 1.63520 1.71844 2.17205 2.56670 2.65627 3.38555 3.41848 3.63257 3.67214 3.75568 3.90474 4.03672 4.06616 4.15487 4.19548 4.26069 4.27104 4.34171 4.37077 4.41097 4.46169 4.47848 4.66700 4.72269 4.84427 4.86230 4.88028 4.92774 4.97101 4.98460 5.08760 5.10641 5.18504 5.23257 5.26633 5.33586 5.46178 5.52334 5.57827 5.65352 5.87366 6.27875 6.62703 7.19309 7.31524 7.35423 8.09707 8.33215 9.29797 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010236 B = 0.002655 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.743291 B =10544.935163 C =12494.571396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.023 4.023 3 C -0.232 4.232 4 C 0.006 3.994 5 C 0.142 3.858 6 O -0.378 6.378 7 C 0.047 3.953 8 C 0.512 3.488 9 O -0.560 6.560 10 N -0.701 5.701 11 C 0.161 3.839 12 H 0.053 0.947 13 C 0.145 3.855 14 N -0.742 5.742 15 C -0.241 4.241 16 H 0.078 0.922 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.971 3.029 20 H -0.275 1.275 21 H -0.300 1.300 22 H -0.281 1.281 23 C -0.070 4.070 24 C -0.140 4.140 25 C -0.137 4.137 26 C -0.120 4.120 27 N -0.385 5.385 28 O 0.093 5.907 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.172 0.828 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.410 0.590 38 H 0.035 0.965 39 H 0.047 0.953 40 H 0.373 0.627 41 H 0.249 0.751 42 H 0.045 0.955 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.037 0.963 49 H 0.043 0.957 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.731 -9.421 16.339 21.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.254 4.254 4 C -0.152 4.152 5 C 0.065 3.935 6 O -0.296 6.296 7 C -0.032 4.032 8 C 0.298 3.702 9 O -0.438 6.438 10 N -0.353 5.353 11 C 0.056 3.944 12 H 0.071 0.929 13 C 0.018 3.982 14 N -0.385 5.385 15 C -0.373 4.373 16 H 0.096 0.904 17 C -0.266 4.266 18 N -0.619 5.619 19 Si 0.800 3.200 20 H -0.201 1.201 21 H -0.226 1.226 22 H -0.208 1.208 23 C -0.072 4.072 24 C -0.198 4.198 25 C -0.194 4.194 26 C -0.177 4.177 27 N -0.093 5.093 28 O 0.027 5.973 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.190 0.810 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.246 0.754 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.206 0.794 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.763 -10.019 16.313 21.490 hybrid contribution 0.830 0.702 -1.315 1.706 sum -8.933 -9.317 14.998 19.787 Atomic orbital electron populations 1.20592 0.80599 1.06170 1.05591 1.25249 0.98004 0.84799 1.00621 1.22526 0.91009 1.01868 1.10006 1.23466 0.98188 0.90274 1.03233 1.20449 0.90105 0.79550 1.03443 1.87895 1.30322 1.15562 1.95861 1.22319 0.88246 0.87456 1.05189 1.20500 0.85861 0.87995 0.75802 1.90688 1.19278 1.83830 1.50035 1.45726 1.09915 1.05533 1.74163 1.21059 0.97135 0.79962 0.96212 0.92916 1.21229 0.95330 0.95664 0.85952 1.42527 1.43223 1.37037 1.15737 1.19573 1.10541 1.09866 0.97285 0.90362 1.25516 1.02570 0.99356 0.99141 1.69822 1.45634 1.27643 1.18755 0.85255 0.79513 0.77545 0.77675 1.20086 1.22650 1.20771 1.20854 0.96826 0.96245 0.93240 1.21892 1.01224 0.94084 1.02600 1.21879 0.95896 1.02025 0.99628 1.21768 0.97222 0.98924 0.99798 1.73744 0.98160 1.15543 1.21844 1.84761 1.10964 1.33793 1.67744 0.88122 0.87490 0.87847 0.81011 0.89801 0.88645 0.88648 0.86581 0.75393 0.94684 0.93546 0.79449 0.94208 0.93574 0.92030 0.90698 0.91322 0.92535 0.92095 0.94382 0.93840 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.45 71.24 0.74 0.08 16 2 C -0.02 -0.45 7.49 25.04 0.19 -0.26 16 3 C -0.23 -5.62 10.45 22.40 0.23 -5.38 16 4 C 0.01 0.16 7.28 43.58 0.32 0.47 16 5 C 0.14 3.20 6.56 71.23 0.47 3.67 16 6 O -0.38 -10.40 9.37 -129.94 -1.22 -11.62 16 7 C 0.05 1.13 6.42 71.24 0.46 1.58 16 8 C 0.51 16.01 6.26 87.66 0.55 16.56 16 9 O -0.56 -21.66 13.62 16.01 0.22 -21.44 16 10 N -0.70 -20.80 3.64 -442.53 -1.61 -22.41 16 11 C 0.16 5.19 1.69 44.99 0.08 5.27 16 12 H 0.05 2.07 7.58 -2.39 -0.02 2.05 16 13 C 0.14 5.28 5.10 86.38 0.44 5.72 16 14 N -0.74 -35.59 5.43 -343.45 -1.87 -37.46 16 15 C -0.24 -12.82 9.99 84.03 0.84 -11.98 16 16 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 17 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 18 N -0.97 -58.04 13.06 21.65 0.28 -57.76 16 19 Si 0.97 45.04 29.55 68.60 2.03 47.06 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 C -0.07 -1.78 0.62 -52.18 -0.03 -1.81 16 24 C -0.14 -3.29 8.12 71.98 0.58 -2.70 16 25 C -0.14 -2.90 7.97 71.98 0.57 -2.32 16 26 C -0.12 -3.19 7.00 71.98 0.50 -2.68 16 27 N -0.39 -10.28 12.07 -49.57 -0.60 -10.88 16 28 O 0.09 2.17 11.20 71.67 0.80 2.97 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.17 4.27 8.05 -2.91 -0.02 4.25 16 33 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.10 2.13 8.14 -2.39 -0.02 2.12 16 36 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.41 11.06 8.60 -92.71 -0.80 10.27 16 38 H 0.04 1.31 6.71 -2.39 -0.02 1.29 16 39 H 0.05 1.58 6.17 -2.39 -0.01 1.56 16 40 H 0.37 19.56 7.33 -92.71 -0.68 18.88 16 41 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 42 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 1.45 6.54 -2.39 -0.02 1.44 16 44 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.06 1.15 7.60 -2.39 -0.02 1.13 16 47 H 0.06 1.32 6.32 -2.39 -0.02 1.31 16 48 H 0.04 1.18 7.53 -2.39 -0.02 1.16 16 49 H 0.04 1.23 5.77 -2.39 -0.01 1.21 16 50 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -72.98 404.08 3.93 -69.05 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: -0.52 Total: 39.92 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 6.41 Total: 2.57 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -3.79 Total: -128.52 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.20 Total: -30.09 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -72.98 3.93 -69.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507963950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.632 kcal (2) G-P(sol) polarization free energy of solvation -72.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds