Wall clock time and date at job start Sat Apr 11 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 110.45556 * 2 1 4 4 O 1.21287 * 120.00058 * 120.70406 * 3 2 1 5 5 N 1.34772 * 120.00454 * 300.70544 * 3 2 1 6 6 C 1.46497 * 120.00394 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47450 * 179.97438 * 6 5 3 8 8 H 1.08996 * 112.84858 * 43.80135 * 7 6 5 9 9 C 1.53776 * 113.61763 * 174.99744 * 7 6 5 10 10 C 1.53777 * 87.08560 * 140.06232 * 9 7 6 11 11 H 1.09001 * 113.61344 * 89.19282 * 10 9 7 12 12 N 1.46895 * 113.62266 * 220.02205 * 10 9 7 13 13 C 1.46893 * 111.00318 * 203.47010 * 12 10 9 14 14 C 1.50708 * 109.47146 * 179.97438 * 13 12 10 15 15 O 1.21288 * 119.99815 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99719 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99349 * 180.02562 * 16 14 13 18 18 H 1.07991 * 120.00515 * 359.97438 * 17 16 14 19 19 C 1.38955 * 119.99490 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00236 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99845 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48502 * 109.47194 * 300.00675 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00238 * 21 19 17 25 25 C 1.53790 * 87.17058 * 334.61298 * 10 9 7 26 26 C 1.54512 * 110.51122 * 122.60869 * 2 1 3 27 27 C 1.54477 * 104.06082 * 118.78184 * 26 2 1 28 28 O 1.44425 * 104.80776 * 23.97990 * 27 26 2 29 29 C 1.44787 * 105.28900 * 319.45350 * 28 27 26 30 30 H 1.08992 * 109.47188 * 59.29782 * 1 2 3 31 31 H 1.09000 * 109.46898 * 179.30049 * 1 2 3 32 32 H 1.09006 * 109.47015 * 299.29334 * 1 2 3 33 33 H 0.97001 * 120.00109 * 359.97438 * 5 3 2 34 34 H 1.09001 * 109.47607 * 59.99321 * 6 5 3 35 35 H 1.09003 * 109.47003 * 299.99296 * 6 5 3 36 36 H 1.09004 * 113.61447 * 25.51632 * 9 7 6 37 37 H 1.09001 * 113.69474 * 254.62345 * 9 7 6 38 38 H 1.00899 * 111.00063 * 79.51186 * 12 10 9 39 39 H 1.09002 * 109.47091 * 59.99845 * 13 12 10 40 40 H 1.09000 * 109.47343 * 299.99463 * 13 12 10 41 41 H 0.96996 * 120.00564 * 359.97438 * 16 14 13 42 42 H 0.97001 * 119.99781 * 179.97438 * 20 19 17 43 43 H 1.08997 * 113.61813 * 139.94008 * 25 10 9 44 44 H 1.09000 * 113.61127 * 270.83811 * 25 10 9 45 45 H 1.09001 * 110.50578 * 237.42365 * 26 2 1 46 46 H 1.08997 * 110.51469 * 359.97438 * 26 2 1 47 47 H 1.09007 * 110.36981 * 142.81043 * 27 26 2 48 48 H 1.09002 * 110.37422 * 265.02902 * 27 26 2 49 49 H 1.09008 * 110.42380 * 281.77272 * 29 28 27 50 50 H 1.09001 * 110.48605 * 159.32950 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0567 1.4119 0.0000 4 8 2.7711 1.7927 0.9031 5 7 1.7338 2.2516 -1.0035 6 6 2.2463 3.6240 -1.0038 7 6 1.7348 4.3592 -2.2443 8 1 0.6787 4.1746 -2.4403 9 6 2.1166 5.8485 -2.2789 10 6 2.3730 5.6670 -3.7843 11 1 1.4916 5.8411 -4.4014 12 7 3.5600 6.3834 -4.2698 13 6 3.4619 6.6485 -5.7113 14 6 4.6944 7.3835 -6.1718 15 8 5.5681 7.6597 -5.3773 16 7 4.8250 7.7347 -7.4664 17 6 5.9465 8.4029 -7.8854 18 1 6.7248 8.6482 -7.1782 19 6 6.0815 8.7646 -9.2203 20 7 5.1346 8.4658 -10.0811 21 14 7.6091 9.6757 -9.7911 22 1 7.5103 9.9431 -11.2485 23 1 7.7214 10.9620 -9.0577 24 1 8.8104 8.8455 -9.5211 25 6 2.6305 4.1809 -3.4837 26 6 2.0714 -0.7799 1.2190 27 6 2.8787 -1.9394 0.5944 28 8 3.2435 -1.4684 -0.7212 29 6 2.0713 -0.7796 -1.2188 30 1 -0.3633 0.5247 -0.8836 31 1 -0.3633 -1.0276 -0.0125 32 1 -0.3633 0.5028 0.8963 33 1 1.1627 1.9471 -1.7260 34 1 3.3360 3.6051 -1.0166 35 1 1.9024 4.1404 -0.1075 36 1 3.0153 6.0822 -1.7081 37 1 1.2867 6.5187 -2.0551 38 1 4.4036 5.8744 -4.0523 39 1 2.5804 7.2581 -5.9094 40 1 3.3792 5.7043 -6.2496 41 1 4.1261 7.5142 -8.1018 42 1 5.2287 8.7186 -11.0128 43 1 2.2139 3.5056 -4.2311 44 1 3.6699 3.9579 -3.2429 45 1 2.7201 -0.1441 1.8217 46 1 1.2491 -1.1650 1.8220 47 1 3.7715 -2.1420 1.1861 48 1 2.2617 -2.8350 0.5212 49 1 1.3294 -1.4966 -1.5707 50 1 2.3441 -0.0913 -2.0188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565854001.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:30 Heat of formation + Delta-G solvation = -103.550318 kcal Electronic energy + Delta-G solvation = -28846.524570 eV Core-core repulsion = 24680.957600 eV Total energy + Delta-G solvation = -4165.566970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10315 -39.66571 -38.59741 -38.01274 -35.20696 -34.28070 -33.97447 -33.12453 -31.19764 -30.29405 -28.28482 -26.96693 -26.27790 -25.78294 -24.17512 -23.72790 -22.57443 -21.55912 -20.32339 -19.59982 -19.03045 -17.86903 -17.77878 -16.62138 -16.45803 -16.20953 -15.99552 -15.76508 -15.38465 -15.26510 -14.84681 -14.55871 -14.39983 -14.23369 -13.84416 -13.72370 -13.65061 -13.33581 -13.12529 -12.86128 -12.56168 -12.53557 -12.37535 -12.14221 -11.91902 -11.81513 -11.57718 -11.54939 -11.50945 -11.18201 -11.09294 -11.00670 -10.72589 -10.49932 -10.43548 -10.36720 -10.20134 -9.92283 -9.49388 -9.38192 -8.43942 -8.00983 -7.94230 -6.41105 -3.81875 2.25835 2.74996 3.20953 3.26401 3.31113 3.47281 3.80782 3.91713 4.08837 4.10836 4.29114 4.31311 4.37440 4.41070 4.52850 4.65032 4.69176 4.71586 4.85905 4.92878 4.96095 5.00061 5.13869 5.18469 5.18792 5.25299 5.28029 5.28954 5.37937 5.44732 5.47161 5.60483 5.66666 5.68870 5.71560 5.80365 5.86922 5.97523 6.01838 6.13811 6.21144 6.25965 6.33567 7.11553 7.28127 7.55739 7.67616 7.86017 8.07007 8.62074 9.18542 9.54999 10.06652 10.76550 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021369 B = 0.001611 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.977849 B =17377.435196 C =17876.529547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.119 4.119 3 C 0.528 3.472 4 O -0.532 6.532 5 N -0.726 5.726 6 C 0.130 3.870 7 C -0.125 4.125 8 H 0.094 0.906 9 C -0.116 4.116 10 C 0.069 3.931 11 H 0.096 0.904 12 N -0.658 5.658 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.583 6.583 16 N -0.564 5.564 17 C -0.300 4.300 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.284 1.284 23 H -0.273 1.273 24 H -0.274 1.274 25 C -0.166 4.166 26 C -0.144 4.144 27 C 0.045 3.955 28 O -0.369 6.369 29 C 0.057 3.943 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.399 0.601 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.352 0.648 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.830 -20.494 17.636 31.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.122 4.122 3 C 0.313 3.687 4 O -0.408 6.408 5 N -0.377 5.377 6 C 0.007 3.993 7 C -0.144 4.144 8 H 0.113 0.887 9 C -0.155 4.155 10 C -0.042 4.042 11 H 0.114 0.886 12 N -0.289 5.289 13 C -0.082 4.082 14 C 0.225 3.775 15 O -0.468 6.468 16 N -0.200 5.200 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.758 3.242 22 H -0.210 1.210 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.205 4.205 26 C -0.182 4.182 27 C -0.031 4.031 28 O -0.288 6.288 29 C -0.020 4.020 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.233 0.767 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.172 0.828 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.118 0.882 46 H 0.102 0.898 47 H 0.113 0.887 48 H 0.079 0.921 49 H 0.092 0.908 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.725 -19.354 18.662 30.654 hybrid contribution -0.139 -0.663 -1.471 1.619 sum -14.863 -20.017 17.191 30.284 Atomic orbital electron populations 1.21818 0.91154 1.03260 1.03061 1.22196 0.97952 0.93637 0.98431 1.20152 0.80150 0.86663 0.81746 1.90694 1.36904 1.77118 1.36130 1.45981 1.52715 1.13169 1.25836 1.21425 0.99301 0.80452 0.98100 1.22692 0.99836 0.97432 0.94415 0.88746 1.23046 1.02115 0.93508 0.96845 1.22986 0.94621 0.90631 0.95979 0.88597 1.60000 1.04012 1.50869 1.13998 1.21707 0.98839 0.99031 0.88643 1.19850 0.88822 0.85515 0.83311 1.90524 1.43384 1.59353 1.53499 1.41860 1.20275 1.50733 1.07179 1.19663 0.97836 1.31854 0.93601 0.87975 1.25262 0.98876 0.98121 0.95678 1.69605 1.33451 1.47285 1.04041 0.85912 0.81159 0.79834 0.77280 1.20986 1.19875 1.19927 1.23894 1.00347 0.98917 0.97388 1.23076 1.01036 0.97209 0.96900 1.23446 0.99825 0.95906 0.83959 1.89245 1.34605 1.73693 1.31216 1.23585 0.88474 0.95020 0.94921 0.91684 0.90969 0.91419 0.76652 0.91020 0.91248 0.89125 0.91045 0.82761 0.89666 0.93881 0.77475 0.91843 0.91520 0.89558 0.88152 0.89824 0.88728 0.92086 0.90816 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.54 8.19 37.16 0.30 -0.23 16 2 C -0.12 -0.80 0.88 -154.10 -0.14 -0.93 16 3 C 0.53 5.12 6.48 -10.99 -0.07 5.05 16 4 O -0.53 -7.43 15.28 5.55 0.08 -7.34 16 5 N -0.73 -5.47 5.20 -60.30 -0.31 -5.78 16 6 C 0.13 1.14 5.52 -4.04 -0.02 1.12 16 7 C -0.12 -0.95 3.75 -89.72 -0.34 -1.29 16 8 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 9 C -0.12 -1.14 7.44 -25.92 -0.19 -1.33 16 10 C 0.07 0.78 4.16 -66.90 -0.28 0.50 16 11 H 0.10 1.01 7.88 -51.93 -0.41 0.60 16 12 N -0.66 -10.41 6.24 -107.13 -0.67 -11.08 16 13 C 0.05 0.88 6.02 -4.98 -0.03 0.85 16 14 C 0.44 10.44 7.82 -10.98 -0.09 10.35 16 15 O -0.58 -16.03 15.78 5.55 0.09 -15.94 16 16 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 17 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 18 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 21 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C -0.17 -1.54 7.27 -25.82 -0.19 -1.72 16 26 C -0.14 -1.01 6.32 -25.16 -0.16 -1.17 16 27 C 0.05 0.31 7.63 37.93 0.29 0.60 16 28 O -0.37 -3.61 11.66 -35.23 -0.41 -4.02 16 29 C 0.06 0.38 6.74 37.93 0.26 0.64 16 30 H 0.06 0.18 7.59 -51.93 -0.39 -0.22 16 31 H 0.07 0.19 8.12 -51.93 -0.42 -0.23 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.40 1.95 7.84 -40.82 -0.32 1.63 16 34 H 0.07 0.76 7.86 -51.93 -0.41 0.35 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.35 5.84 7.91 -39.29 -0.31 5.53 16 39 H 0.09 1.37 8.13 -51.93 -0.42 0.95 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.09 0.90 7.59 -51.93 -0.39 0.50 16 45 H 0.10 0.95 6.50 -51.93 -0.34 0.61 16 46 H 0.08 0.41 7.73 -51.93 -0.40 0.01 16 47 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.07 0.33 7.86 -51.92 -0.41 -0.07 16 50 H 0.09 0.61 7.59 -51.93 -0.39 0.22 16 LS Contribution 405.98 15.07 6.12 6.12 Total: -1.00 -34.81 405.98 -8.61 -43.42 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -8.26 Total: 12.39 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -0.89 Total: 4.35 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.32 Total: -55.14 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.24 Total: -27.30 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.81 -8.61 -43.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565854001.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.131 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds